genome.fa.s22.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  139  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40003579--40003642	26	2.5	26	81	0	83	31	6	25	37	1.81
40008098--40008144	2	23.5	2	100	0	94	51	0	48	0	1.00
40008408--40008450	16	2.7	16	88	0	59	37	2	32	27	1.70
40008684--40008718	18	2.0	17	88	5	52	54	0	0	45	0.99
40008571--40008887	157	2.0	157	96	0	589	44	3	4	47	1.40
40008821--40008862	15	2.7	16	82	14	52	52	2	0	45	1.13
40008830--40008871	15	2.9	15	82	10	52	52	0	0	47	1.00
40008827--40009055	120	1.9	120	99	0	449	49	5	2	43	1.37
40008944--40008981	16	2.4	17	82	13	53	55	0	0	44	0.99
40008940--40008991	15	3.6	15	80	12	56	53	0	0	46	1.00
40018317--40018368	15	3.6	15	80	12	56	46	0	0	53	1.00
40018253--40018481	120	1.9	120	99	0	449	43	2	5	49	1.37
40018446--40018487	15	2.7	16	82	14	52	45	0	2	52	1.13
40018437--40018478	15	2.9	15	82	10	52	47	0	0	52	1.00
40018421--40018737	157	2.0	157	96	0	589	47	4	3	44	1.40
40018590--40018624	18	2.0	17	88	5	52	45	0	0	54	0.99
40018422--40018660	75	3.1	75	65	18	200	46	2	3	47	1.34
40018860--40018911	16	3.2	16	84	10	70	34	34	0	30	1.58
40019164--40019200	2	18.5	2	100	0	74	0	48	0	51	1.00
40023666--40023726	13	4.7	13	77	0	59	39	26	6	27	1.81
40023663--40023726	26	2.5	26	81	0	83	37	25	6	31	1.81
40030563--40030630	35	2.0	34	82	8	84	54	1	10	33	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40030760--40030802	3	14.3	3	95	0	77	65	2	0	32	1.06
40031824--40031857	17	2.1	17	88	5	52	8	8	41	41	1.67
40032178--40032367	44	4.5	41	75	10	166	28	21	21	28	1.98
40032211--40032408	44	4.6	43	74	7	168	27	22	19	30	1.98
40032178--40032502	129	2.5	128	84	5	411	26	22	21	29	1.99
40032289--40032889	44	14.0	42	70	13	291	26	21	20	30	1.98
40032290--40032498	87	2.4	85	80	4	224	25	23	21	29	1.99
40032472--40032589	47	2.7	41	82	8	128	28	24	20	26	1.99
40032638--40032884	46	5.7	45	71	17	157	27	20	20	31	1.97
40032434--40032888	170	2.7	170	88	3	646	27	21	21	30	1.98
40045442--40045509	35	2.0	34	82	8	84	54	1	10	33	1.43
40045641--40045680	3	13.3	3	94	0	71	65	2	0	32	1.06
40046703--40046736	17	2.1	17	88	5	52	8	8	41	41	1.67
40058237--40058334	26	3.9	25	77	13	85	64	3	4	28	1.27
40059994--40060092	28	3.5	28	83	2	119	33	13	24	29	1.93
40060788--40061181	23	17.0	23	76	11	324	28	14	17	39	1.89
40060782--40061203	93	4.5	93	94	2	713	28	14	17	38	1.90
40062280--40062322	23	1.9	23	90	4	70	6	0	16	76	0.99
40064337--40064378	19	2.2	20	82	4	50	30	7	11	50	1.66
40072079--40072138	27	2.2	27	90	0	93	25	31	6	36	1.82
40085163--40085190	14	2.0	14	100	0	56	50	7	7	35	1.57
40088731--40089037	42	7.2	42	87	6	372	33	21	21	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40088731--40089037	126	2.4	128	85	6	410	33	21	21	23	1.97
40088934--40089060	43	3.0	43	84	7	127	31	19	22	26	1.98
40089505--40089541	12	3.1	12	92	0	56	5	40	13	40	1.67
40089526--40089594	21	3.3	21	85	0	84	4	39	17	39	1.69
40092854--40093234	91	4.2	92	97	2	725	48	4	7	39	1.51
40092854--40093234	181	2.1	183	97	1	723	48	4	7	39	1.51
40093237--40093261	12	2.1	12	100	0	50	32	0	16	52	1.44
40093233--40093284	22	2.4	21	87	3	68	38	1	17	42	1.60
40093280--40093317	7	5.6	7	82	17	53	28	0	13	57	1.36
40093322--40093378	21	2.8	19	79	12	60	40	5	12	42	1.65
40093227--40093404	96	1.9	96	92	1	304	36	2	14	46	1.60
40093343--40093451	52	2.1	52	91	3	175	33	5	13	47	1.66
40094652--40094750	52	1.9	52	95	0	180	31	18	6	44	1.74
40094657--40094735	25	3.0	27	60	14	65	32	18	5	43	1.72
40096658--40096715	28	2.1	28	83	6	73	44	29	3	22	1.69
40098732--40099098	46	7.6	49	85	8	431	34	13	22	29	1.93
40098732--40099098	98	3.7	97	84	9	492	34	13	22	29	1.93
40098976--40099009	7	4.7	7	88	3	50	44	2	26	26	1.69
40098746--40099098	196	1.8	196	92	0	598	34	13	22	29	1.93
40099062--40099207	37	4.0	37	92	1	233	36	16	21	25	1.94
40098732--40099087	150	2.4	150	89	4	478	34	14	21	29	1.93
40099812--40099874	31	2.0	32	84	9	85	38	42	1	17	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40099849--40099893	21	2.1	21	83	0	54	42	40	0	17	1.50
40100105--40100416	113	2.8	112	87	1	430	28	24	21	25	1.99
40100105--40100434	111	3.0	110	85	3	428	29	24	21	24	1.99
40101269--40101308	14	2.9	14	84	0	53	42	17	7	32	1.77
40101234--40101300	34	1.9	35	87	3	100	44	13	10	31	1.77
40103824--40103848	13	1.9	13	100	0	50	32	4	0	64	1.12
40106921--40106974	18	3.1	17	73	10	56	51	0	5	42	1.25
40113441--40113478	15	2.4	16	82	4	51	28	2	0	68	1.03
40116922--40116970	25	2.0	24	88	4	71	46	2	0	51	1.12
40127602--40127655	22	2.5	22	84	0	81	27	12	1	57	1.46
40128403--40128444	21	2.0	22	90	4	68	57	9	7	26	1.56
40137731--40137771	20	2.0	20	85	0	55	39	14	7	39	1.74
40159375--40159415	22	2.0	20	85	9	55	48	4	7	39	1.52
40159833--40159878	22	2.3	19	85	11	56	45	2	4	47	1.34
40159870--40159909	19	2.2	18	86	4	53	55	0	2	42	1.13
40159869--40159958	35	2.6	33	74	20	78	50	0	1	48	1.08
40164164--40164218	23	2.4	23	87	0	83	12	23	23	40	1.89
40166321--40166372	23	2.2	25	80	13	65	42	0	1	55	1.10
40166337--40166380	11	3.8	11	82	11	61	36	0	0	63	0.95
40166330--40166378	24	2.1	23	96	3	89	40	0	0	59	0.98
40167408--40167826	207	2.0	207	98	0	811	40	8	20	29	1.83
40169950--40170158	105	2.0	104	95	2	375	29	10	15	44	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40172949--40172992	23	1.9	23	95	0	79	29	4	25	40	1.75
40175616--40175656	12	3.4	12	89	0	64	51	41	2	4	1.36
40175616--40175656	2	20.5	2	84	0	55	51	41	2	4	1.36
40177184--40177460	139	2.0	138	96	2	511	39	1	17	41	1.57
40177429--40177480	16	3.0	16	76	23	52	46	0	28	25	1.53
40178133--40178207	31	2.4	30	82	6	87	33	8	4	54	1.48
40186543--40186717	42	4.1	43	77	8	146	23	13	19	43	1.87
40186559--40186720	43	3.8	43	78	8	143	24	14	20	41	1.89
40191912--40191939	5	5.6	5	100	0	56	42	17	17	21	1.89
40192856--40192892	9	4.1	9	92	0	65	29	10	13	45	1.77
40194086--40194138	17	2.9	18	80	11	63	43	5	15	35	1.70
40194343--40194384	22	1.9	21	85	9	57	40	9	2	47	1.49
40197288--40197345	28	2.0	30	83	16	77	37	5	0	56	1.21
40200284--40200313	14	2.2	13	94	5	51	46	20	20	13	1.83
40206770--40206813	17	2.6	16	76	13	52	15	54	0	29	1.42
40222684--40222726	21	2.0	21	90	0	68	27	25	11	34	1.91
40227765--40227809	18	2.5	18	85	7	56	11	8	2	77	1.07
40228598--40228655	7	8.4	7	84	7	57	15	0	1	82	0.74
40228597--40228655	15	3.7	15	81	18	75	16	0	1	81	0.78
40232749--40232797	18	2.7	18	84	12	57	81	4	12	2	0.91
40232764--40232804	12	3.3	12	83	6	55	80	2	17	0	0.82
40232749--40232805	13	4.5	13	80	6	64	80	3	14	1	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40232749--40232805	25	2.3	25	84	6	80	80	3	14	1	0.92
40233139--40233334	108	1.8	108	84	2	268	25	17	11	45	1.81
40233791--40234557	88	8.8	88	84	2	888	29	22	23	24	1.99
40233979--40234220	44	5.5	44	64	13	120	28	24	23	23	1.99
40234635--40234830	95	2.1	95	89	3	297	28	19	23	27	1.99
40234833--40235805	124	7.8	123	86	6	1236	33	23	20	22	1.97
40234837--40235805	248	3.9	250	90	3	1415	33	23	20	22	1.97
40234836--40235805	40	23.3	43	81	11	763	33	23	20	22	1.97
40234837--40235805	84	11.6	84	86	6	1257	33	23	20	22	1.97
40237285--40237342	7	8.4	7	84	7	57	15	0	1	82	0.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172