genome.fa.s22.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  167  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49449833--49449888	23	2.3	24	77	17	62	48	3	8	39	1.52
49450120--49450193	31	2.5	29	81	14	89	66	0	1	32	1.00
49457537--49457580	20	2.1	21	91	4	72	63	9	0	27	1.24
49462068--49462105	20	1.9	20	89	10	60	39	0	10	50	1.37
49463002--49463031	7	4.3	7	95	0	51	56	13	0	30	1.37
49470132--49470168	17	2.1	19	85	10	51	37	0	2	59	1.12
49478488--49478525	16	2.3	17	86	4	51	55	31	5	7	1.51
49495657--49495760	49	2.1	49	90	0	163	30	8	10	50	1.67
49497214--49497257	18	2.4	18	96	0	79	38	0	0	61	0.96
49497223--49497278	26	2.1	28	83	6	71	35	0	1	62	1.06
49497144--49498214	120	9.0	120	92	2	1740	42	1	4	51	1.30
49497452--49497485	17	2.0	17	100	0	68	41	0	0	58	0.98
49497591--49497746	26	5.5	26	65	21	82	45	0	2	51	1.19
49497643--49497813	57	3.1	51	68	22	146	43	1	5	49	1.32
49498040--49498074	18	2.0	17	94	5	61	40	0	2	57	1.14
49498352--49498447	45	2.2	44	90	5	149	36	29	4	30	1.76
49498433--49498465	16	2.1	16	100	0	66	24	33	6	36	1.80
49500038--49500084	22	2.2	22	85	11	62	31	0	4	63	1.13
49521234--49521293	26	2.2	26	85	5	75	48	30	3	18	1.64
49529977--49530035	30	2.0	30	93	0	100	16	33	28	20	1.95
49550740--49550794	24	2.2	24	75	15	58	40	7	1	50	1.40
49561821--49561876	28	2.0	27	83	10	69	55	5	1	37	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49561843--49561878	19	1.9	19	88	5	56	55	2	0	41	1.14
49564204--49564229	4	6.5	4	100	0	52	26	0	23	50	1.50
49565073--49565123	22	2.2	25	82	10	63	56	0	1	41	1.10
49574632--49574670	3	13.0	3	83	0	51	28	35	5	30	1.79
49590443--49590483	21	2.0	21	90	0	64	29	21	29	19	1.98
49594120--49594172	26	2.0	26	96	0	97	32	3	24	39	1.73
49595000--49595048	4	12.2	4	100	0	98	24	0	24	51	1.49
49598202--49598270	29	2.3	31	85	7	88	31	2	10	55	1.48
49600894--49600938	24	1.9	24	82	13	58	35	8	4	51	1.54
49601962--49601996	17	2.1	17	94	0	61	77	5	14	2	1.07
49603657--49603750	43	2.2	43	92	1	163	29	24	14	30	1.95
49603733--49603769	7	5.3	7	90	0	56	27	29	5	37	1.79
49603690--49603813	57	2.2	58	86	1	178	29	24	12	33	1.93
49605805--49605906	44	2.4	42	86	8	134	19	22	21	36	1.95
49605804--49605913	23	5.1	21	84	7	132	20	21	20	36	1.95
49608891--49608959	35	2.0	35	100	0	138	34	17	26	21	1.95
49611336--49611376	21	2.0	21	90	0	64	19	29	21	29	1.98
49621940--49622033	48	2.0	48	85	8	129	40	26	12	20	1.88
49624446--49624539	48	2.0	48	85	8	129	40	26	12	20	1.88
49629294--49629337	22	2.0	23	90	4	72	34	0	15	50	1.45
49632268--49632331	25	2.4	27	74	10	69	50	1	3	45	1.27
49637057--49637418	91	4.0	89	89	2	435	47	2	4	45	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49637073--49637397	47	7.1	46	70	17	214	45	1	4	47	1.35
49637118--49637375	44	5.7	43	67	15	144	47	2	4	45	1.36
49637066--49637418	182	1.9	181	90	0	562	47	1	4	45	1.35
49637330--49637549	120	1.8	121	93	4	383	45	2	4	47	1.34
49639040--49639103	3	21.3	3	86	0	92	64	1	3	31	1.19
49639582--49639609	12	2.3	12	100	0	56	0	42	35	21	1.53
49640414--49641471	174	6.1	174	96	0	1947	26	22	19	30	1.98
49642074--49642179	53	2.0	53	100	0	212	30	26	11	32	1.91
49643931--49643960	9	3.2	9	90	9	51	10	0	10	80	0.92
49643931--49643960	10	3.1	10	95	4	53	10	0	10	80	0.92
49648843--49648915	38	2.0	37	86	10	105	54	0	9	35	1.33
49648832--49648919	36	2.4	34	81	18	99	54	1	7	36	1.37
49649046--49649103	3	19.3	3	85	0	80	63	1	3	31	1.21
49649578--49649605	12	2.3	12	100	0	56	0	42	35	21	1.53
49650211--49650289	27	3.4	22	68	21	63	45	1	2	50	1.23
49650467--49650512	16	2.9	16	90	0	65	26	30	2	41	1.68
49657994--49658066	21	3.5	20	77	18	69	61	1	6	30	1.30
49658009--49658051	15	2.9	15	78	21	54	65	0	4	30	1.13
49659320--49659430	53	2.1	53	94	0	195	38	14	20	26	1.91
49660007--49660239	73	3.2	72	83	9	292	33	21	19	26	1.97
49659913--49660385	235	2.0	234	82	6	564	32	21	18	26	1.97
49660087--49660385	162	1.8	163	86	3	433	32	23	18	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49660529--49660865	75	4.5	75	87	3	430	32	19	15	32	1.94
49660529--49660883	147	2.4	148	82	5	441	34	19	15	30	1.92
49660883--49661058	71	2.5	70	85	3	212	34	22	14	28	1.94
49673392--49673431	15	2.6	15	88	11	55	62	0	10	27	1.27
49675604--49675630	13	2.1	13	100	0	54	62	14	0	22	1.31
49676091--49676146	15	3.9	15	74	4	53	35	1	0	62	1.06
49676092--49676146	22	2.6	21	80	5	65	36	1	0	61	1.06
49676262--49676329	28	2.5	28	87	2	93	41	7	2	48	1.46
49676472--49676618	4	36.0	4	76	16	117	69	0	30	0	0.89
49676515--49676647	45	3.1	45	80	12	140	70	0	28	0	0.92
49676563--49676632	16	5.0	15	77	21	64	68	0	30	1	0.98
49676463--49676652	79	2.5	77	84	9	246	68	0	31	0	0.94
49676494--49676677	33	5.5	33	74	14	94	68	0	30	0	0.94
49676463--49676679	79	2.8	77	79	14	236	68	0	31	0	0.94
49677318--49677463	75	1.9	78	86	6	210	53	8	3	34	1.48
49677894--49677925	15	2.1	15	100	0	64	53	0	6	40	1.26
49681619--49681663	18	2.5	18	92	0	72	15	48	4	31	1.65
49682764--49682837	27	2.7	27	83	8	89	17	29	28	24	1.97
49682897--49682940	23	1.9	23	100	0	88	47	0	9	43	1.35
49690825--49690922	33	2.9	33	84	7	108	36	22	10	30	1.87
49691139--49691335	41	4.8	41	90	5	299	27	22	21	28	1.99
49696038--49696149	55	2.0	55	94	0	197	51	12	8	26	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49698866--49698903	5	7.8	5	82	5	51	55	0	0	44	0.99
49700822--49700913	22	4.2	22	88	0	112	30	27	0	42	1.56
49700863--49700965	52	2.0	51	83	9	129	33	32	0	34	1.58
49700915--49700956	22	1.9	22	90	0	66	33	33	0	33	1.58
49700998--49701053	28	2.0	29	92	3	96	37	0	1	60	1.07
49700998--49701061	28	2.2	29	88	2	94	37	0	1	60	1.06
49703359--49703779	28	15.5	28	77	16	367	47	22	0	30	1.52
49703327--49703794	216	2.2	206	90	5	704	47	22	0	30	1.52
49703327--49703631	23	11.8	23	72	19	130	47	23	0	29	1.52
49703543--49703628	22	3.8	22	82	8	118	48	24	0	26	1.51
49703633--49703787	23	6.2	24	75	16	129	47	21	0	30	1.51
49703716--49703750	18	2.0	18	88	5	54	48	20	0	31	1.50
49706955--49707235	125	2.3	124	81	5	334	33	24	13	28	1.94
49708099--49708162	29	2.2	29	88	0	101	57	0	6	35	1.24
49708097--49708168	14	4.8	15	79	16	78	58	0	5	36	1.22
49718408--49718495	11	8.4	11	71	14	69	56	0	4	38	1.20
49718400--49718484	20	4.2	20	74	19	86	60	0	3	36	1.14
49720492--49720539	11	4.3	11	80	12	53	75	2	12	10	1.14
49720495--49720539	24	1.9	23	86	4	63	73	2	13	11	1.19
49725715--49725759	23	1.9	23	90	4	72	28	0	8	62	1.25
49727319--49728115	117	6.7	118	87	3	990	16	26	20	37	1.93
49727319--49728118	237	3.3	237	87	2	1077	16	26	20	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49727884--49728120	126	1.9	126	90	0	384	15	26	18	39	1.91
49728780--49728818	20	2.0	20	89	0	60	28	0	5	66	1.12
49732795--49732861	27	2.5	27	80	0	80	29	29	29	10	1.90
49732905--49732986	18	4.7	18	72	13	64	65	0	34	0	0.93
49732904--49732979	17	4.5	17	72	26	56	63	0	36	0	0.95
49732907--49732964	30	2.0	28	83	6	71	63	0	36	0	0.94
49738150--49738285	51	2.6	51	90	1	209	14	27	19	38	1.90
49738272--49738298	13	2.1	13	100	0	54	11	44	7	37	1.68
49738221--49738349	64	2.0	64	98	0	249	16	28	17	37	1.91
49740525--49740576	24	2.2	24	85	0	68	53	9	3	32	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172