genome.fa.s22.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  71  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20053635--20053765	44	3.1	42	67	16	101	45	6	3	43	1.48
20053633--20053783	82	1.8	82	87	2	223	46	6	3	43	1.48
20053756--20053795	17	2.3	18	82	8	55	52	0	2	45	1.14
20053949--20054001	26	2.0	27	81	3	63	43	9	1	45	1.47
20054109--20054149	20	2.0	20	95	0	73	26	14	24	34	1.94
20054501--20054820	110	3.0	109	87	2	448	34	18	15	30	1.93
20056798--20056954	43	3.4	43	65	19	109	28	25	17	29	1.97
20056796--20057721	95	10.1	94	76	11	768	30	22	17	29	1.97
20056987--20057339	126	2.8	126	90	0	555	30	22	17	29	1.97
20057712--20058290	88	6.6	88	93	0	942	25	23	23	27	2.00
20059483--20059521	6	6.2	6	82	11	51	0	17	0	82	0.68
20059484--20059521	13	2.9	13	85	14	60	0	15	0	84	0.63
20063243--20063561	110	2.9	110	88	5	454	34	18	15	31	1.93
20063905--20063942	3	13.0	3	84	15	53	65	0	2	31	1.06
20067164--20067246	24	3.6	23	75	14	73	45	0	4	49	1.23
20067615--20067682	32	2.1	33	81	13	79	45	5	5	42	1.52
20067980--20068047	29	2.3	30	81	16	81	26	2	10	60	1.43
20069405--20069434	15	2.0	15	93	0	51	33	3	3	60	1.30
20083823--20083949	43	3.0	43	69	17	100	31	25	18	23	1.98
20089922--20090037	60	1.9	60	94	0	205	37	18	18	25	1.94
20090633--20090681	21	2.3	21	85	3	62	63	2	4	30	1.24
20090774--20090921	27	5.5	27	73	7	104	58	4	4	32	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20090862--20090943	21	3.6	21	76	16	74	67	2	2	28	1.16
20090907--20090956	21	2.4	21	83	12	59	68	2	4	26	1.18
20092546--20093559	44	23.6	43	71	9	457	26	19	21	32	1.97
20092550--20092911	129	2.8	129	80	2	388	27	19	20	33	1.96
20092680--20093039	173	2.1	172	87	2	526	26	18	21	33	1.96
20092848--20093343	129	3.9	129	87	1	672	27	18	21	33	1.97
20092625--20093419	85	9.3	85	68	10	296	26	19	21	33	1.97
20093105--20093513	173	2.4	173	84	4	468	25	20	21	32	1.98
20093278--20093564	129	2.2	128	84	6	357	26	20	22	30	1.98
20093607--20093730	50	2.5	50	84	2	133	25	27	20	26	1.99
20094250--20094337	45	1.9	46	81	2	106	48	10	15	25	1.76
20094624--20094660	17	2.2	17	95	0	65	0	18	2	78	0.87
20098412--20098543	26	5.2	26	74	14	114	62	6	4	27	1.39
20098481--20098529	21	2.3	21	85	3	62	65	2	4	28	1.22
20098700--20098767	25	2.7	26	83	4	84	63	4	2	29	1.29
20098733--20098780	21	2.3	20	82	10	60	64	2	4	29	1.23
20098641--20098767	53	2.4	53	79	7	134	58	4	4	32	1.40
20098721--20098789	25	3.1	21	84	12	77	66	2	2	27	1.20
20100532--20100604	31	2.4	31	81	4	85	30	16	2	50	1.59
20104324--20104375	24	2.2	24	89	0	77	55	9	1	32	1.43
20106823--20106875	23	2.4	22	76	20	56	9	18	1	69	1.25
20111095--20111146	24	2.2	24	89	0	77	55	9	1	32	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20115190--20115387	100	2.0	100	98	0	387	47	23	3	25	1.66
20115478--20115539	29	2.1	29	100	0	124	40	12	19	27	1.88
20116607--20116632	9	2.9	9	100	0	52	23	0	0	76	0.78
20122867--20122929	6	10.3	6	89	3	90	15	22	0	61	1.33
20124471--20124525	21	2.5	23	85	5	69	29	5	10	54	1.57
20126016--20126079	23	2.7	23	78	11	76	48	3	3	45	1.34
20132115--20132146	15	2.1	15	94	0	55	21	6	3	68	1.26
20133755--20133792	20	1.9	19	89	5	58	47	0	0	52	1.00
20137896--20138002	26	4.1	26	92	0	169	19	22	20	37	1.94
20142045--20142098	20	2.7	20	70	0	54	37	22	9	31	1.86
20142368--20142438	35	2.0	35	91	0	115	30	16	4	47	1.66
20145052--20145083	9	3.6	9	91	0	55	9	34	0	56	1.32
20149348--20149399	21	2.5	21	83	0	68	30	7	30	30	1.85
20154649--20154730	25	3.3	24	80	10	76	24	19	24	31	1.98
20156570--20156648	6	14.8	5	75	21	56	74	3	1	20	1.04
20156591--20156633	18	2.4	18	85	14	63	74	2	0	23	0.93
20156570--20156633	11	5.7	11	76	10	67	73	3	1	21	1.06
20156591--20156645	29	1.9	28	82	17	69	74	3	0	21	0.97
20157974--20158025	21	2.3	23	83	9	63	67	3	9	19	1.35
20158186--20158289	9	11.9	9	72	10	56	68	0	8	22	1.23
20158225--20158292	8	8.1	8	78	4	64	69	0	5	25	1.11
20168670--20168784	41	2.8	42	77	6	119	30	22	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20168930--20169041	31	3.6	31	74	4	111	42	16	12	28	1.84
20168981--20169193	31	6.9	31	71	13	127	42	17	7	31	1.79
20169139--20169421	82	3.5	82	95	0	494	43	17	5	33	1.71
20169048--20169421	164	2.2	168	87	4	540	42	17	6	33	1.75
20172979--20173038	30	2.0	29	87	3	84	36	6	25	31	1.82
20173444--20173493	25	2.0	25	96	0	91	14	24	32	30	1.94
20173367--20173727	101	3.6	101	91	4	543	20	19	29	31	1.97
20173645--20173694	26	1.9	26	95	0	91	14	22	34	30	1.93
20181029--20181080	26	2.0	26	96	0	95	13	23	34	28	1.92
20180951--20181314	101	3.6	102	94	2	601	19	20	29	30	1.97
20181230--20181281	27	1.9	27	96	0	95	13	25	32	28	1.93
20184155--20184396	50	4.7	50	77	3	207	23	27	22	26	2.00
20189379--20189488	31	3.6	31	72	4	107	45	14	9	30	1.76
20189515--20189633	31	3.9	31	68	10	82	42	17	7	31	1.77
20189513--20189633	61	2.0	62	80	4	138	43	17	7	31	1.76
20189591--20189873	82	3.5	81	91	1	449	43	16	6	33	1.72
20189835--20189928	31	3.3	28	71	20	72	47	15	5	30	1.68
20191958--20192042	44	1.9	44	95	0	152	30	23	5	40	1.78
20192216--20192362	43	3.5	42	76	8	136	30	24	16	28	1.96
20194611--20194681	30	2.4	30	83	4	81	35	23	11	29	1.90
20194684--20194898	30	7.2	30	79	8	181	25	26	12	36	1.91
20194649--20194873	60	3.8	60	74	8	172	26	25	12	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20201729--20201767	17	2.3	17	90	0	60	25	17	25	30	1.97
20208109--20208346	50	4.7	50	80	5	264	30	27	16	25	1.97
20208102--20208343	101	2.4	100	86	4	324	30	27	16	25	1.97
20208102--20208377	101	2.7	99	81	5	295	30	28	15	26	1.96
20208569--20208600	16	2.0	16	93	0	55	43	9	6	40	1.62
20210771--20210796	11	2.4	11	100	0	52	53	23	7	15	1.67
20211226--20211312	37	2.4	37	88	3	122	35	26	16	21	1.94
20214502--20214539	16	2.2	18	86	9	53	68	5	0	26	1.11
20218611--20218640	3	10.0	3	92	0	51	66	0	30	3	1.07
20218831--20218926	29	3.2	29	76	10	104	26	7	17	48	1.73
20219428--20219463	17	2.1	18	90	10	58	47	13	5	33	1.67
20227350--20227389	19	2.2	18	86	4	53	15	5	17	62	1.49
20232335--20232538	44	4.4	45	68	13	135	26	23	22	27	1.99
20232181--20232647	143	3.3	143	85	2	568	29	20	21	28	1.98
20236821--20236858	17	2.2	17	90	0	58	44	0	15	39	1.47
20239999--20240126	63	2.0	63	95	0	229	27	27	21	24	1.99
20241898--20241938	18	2.3	18	87	4	57	36	17	12	34	1.87
20250268--20250320	27	2.0	25	82	7	61	56	9	13	20	1.64
20252633--20252762	53	2.5	52	87	4	167	36	15	13	35	1.86
20252648--20252762	53	2.2	52	90	3	185	37	17	11	33	1.85
20252858--20253106	43	5.8	43	88	0	345	31	32	15	20	1.94
20252856--20253106	86	2.9	86	90	0	385	32	31	15	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20253294--20253390	35	2.8	35	96	0	185	41	10	8	40	1.69
20256200--20256244	24	1.9	23	90	4	72	26	26	11	35	1.90
20256201--20256254	23	2.3	24	83	3	65	25	31	9	33	1.88
20259077--20259147	24	3.0	24	84	8	85	9	21	0	69	1.17
20259092--20259135	17	2.4	18	85	7	54	9	18	0	72	1.10
20259080--20259142	17	3.6	18	71	25	53	7	20	0	71	1.11
20262022--20262064	21	2.0	22	86	13	63	51	11	13	23	1.74
20262067--20262208	51	2.8	51	83	0	131	37	16	14	31	1.89
20262087--20262242	51	3.1	51	82	7	156	34	16	15	33	1.90
20262240--20262324	19	4.4	19	86	1	107	28	23	12	35	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172