genome.fa.s22.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  103  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29785374--29785507	19	6.7	21	78	10	77	40	14	6	38	1.72
29785374--29785431	22	2.6	22	81	7	64	41	17	5	36	1.72
29785410--29785520	19	5.8	19	89	0	177	37	13	9	39	1.76
29785410--29785513	38	2.7	38	98	0	199	38	12	8	40	1.74
29790054--29790127	32	2.3	33	81	11	91	59	2	0	37	1.12
29790066--29790125	22	2.7	23	76	7	70	60	3	0	36	1.14
29791473--29791517	18	2.6	17	86	6	63	46	2	11	40	1.52
29791713--29791762	21	2.3	22	80	13	59	46	12	8	34	1.70
29793848--29793898	14	3.9	13	78	14	52	60	9	1	27	1.39
29796458--29796634	36	4.7	36	81	14	214	38	14	20	27	1.91
29798084--29798297	100	2.1	99	85	5	279	26	23	18	30	1.98
29799983--29800081	42	2.4	42	82	3	119	19	31	22	27	1.98
29807963--29808754	418	1.9	420	85	1	1106	31	14	18	35	1.91
29813427--29813623	57	3.5	57	85	2	263	51	17	5	25	1.65
29825239--29825290	26	2.0	26	100	0	104	38	23	7	30	1.83
29830261--29830295	17	2.1	17	88	0	52	51	8	2	37	1.47
29836584--29836642	29	2.0	29	93	0	100	20	18	6	54	1.66
29838278--29838329	24	2.2	24	85	0	68	36	3	7	51	1.49
29838421--29838466	24	2.0	23	83	12	58	4	6	30	58	1.43
29840442--29840476	15	2.3	15	90	0	52	25	0	0	74	0.82
29840450--29840476	5	5.4	5	100	0	54	22	0	0	77	0.76
29850920--29851076	43	3.7	43	73	13	146	24	17	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29851765--29851903	67	2.1	67	98	0	269	28	4	20	46	1.69
29856836--29857047	44	4.8	44	81	2	246	29	18	22	29	1.97
29856836--29857042	89	2.3	88	85	2	263	29	19	21	29	1.98
29856611--29857050	133	3.3	136	77	9	428	30	17	22	29	1.97
29858508--29858553	11	4.2	11	78	15	51	26	0	4	69	1.07
29860933--29861041	41	2.7	41	82	5	139	29	27	19	23	1.98
29867468--29867513	23	2.0	23	87	4	67	39	17	2	41	1.62
29869599--29869630	13	2.5	13	94	0	55	31	0	12	56	1.37
29869724--29869964	50	4.7	50	85	4	295	26	24	29	19	1.99
29869724--29869973	100	2.4	103	86	7	357	26	23	29	20	1.99
29876689--29876720	13	2.5	13	94	0	55	31	0	12	56	1.37
29876814--29877055	50	4.7	50	86	4	297	26	24	29	19	1.99
29876814--29877063	100	2.4	103	88	6	364	26	24	29	20	1.99
29881965--29882009	23	2.0	23	86	4	65	37	20	6	35	1.79
29883811--29883921	25	4.4	25	83	0	123	30	22	21	25	1.99
29884407--29884463	25	2.2	27	81	12	66	14	12	26	47	1.79
29884980--29885062	43	1.9	43	90	0	130	22	27	28	20	1.99
29884974--29885072	43	2.3	43	82	6	128	20	27	31	21	1.98
29886828--29886892	25	2.6	25	85	4	78	18	29	20	32	1.96
29886853--29886937	42	2.0	42	88	0	125	17	30	22	29	1.97
29888970--29889646	224	3.0	224	98	0	1313	44	15	8	31	1.76
29891128--29891199	36	2.0	36	88	0	108	31	6	9	51	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29898231--29898263	17	2.0	17	88	5	50	39	3	0	57	1.14
29899666--29899712	22	2.2	21	84	3	58	53	29	0	17	1.44
29900598--29900622	2	12.5	2	100	0	50	48	0	0	52	1.00
29900699--29900753	3	18.3	3	100	0	110	32	0	0	67	0.91
29902152--29902268	35	3.3	35	85	1	144	15	12	33	38	1.85
29902168--29902278	35	3.1	35	85	1	150	14	13	34	37	1.85
29903355--29903398	22	2.0	23	95	4	81	22	13	29	34	1.93
29910688--29910716	14	2.0	15	93	6	51	34	3	0	62	1.12
29920027--29920123	48	2.0	48	93	0	167	37	12	22	27	1.90
29922443--29922480	19	2.0	19	94	0	67	57	2	0	39	1.12
29922628--29922660	6	5.5	6	100	0	66	51	0	0	48	1.00
29922629--29922665	18	2.1	18	90	5	58	56	0	0	43	0.99
29922757--29922823	18	3.9	16	75	12	62	35	1	0	62	1.04
29927296--29927384	23	4.0	22	77	12	83	19	5	22	52	1.66
29928328--29928374	23	2.0	23	83	0	58	65	4	0	29	1.11
29931967--29932174	91	2.3	91	88	2	301	45	3	3	46	1.39
29932190--29932481	120	2.4	120	91	5	475	42	2	5	50	1.39
29932444--29932475	15	2.1	15	94	0	55	50	0	0	50	1.00
29932587--29932621	18	2.0	17	88	5	52	45	0	0	54	0.99
29932419--29932727	157	2.0	156	97	0	582	47	4	2	44	1.38
29938349--29938508	85	1.9	85	82	11	202	34	5	10	50	1.60
29944570--29944601	2	16.0	2	100	0	64	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29946594--29946626	3	11.0	3	93	0	57	69	0	30	0	0.88
29948195--29948225	15	2.0	15	93	6	53	29	0	0	70	0.87
29948374--29948398	13	1.9	13	100	0	50	68	0	0	32	0.90
29948509--29948538	15	2.0	15	100	0	60	33	0	0	66	0.92
29950872--29950911	17	2.2	18	86	8	55	65	2	2	30	1.19
29953083--29953128	23	2.0	23	91	0	74	32	2	4	60	1.28
29956690--29956733	23	1.9	23	90	0	70	61	4	2	31	1.28
29956694--29956736	11	3.8	11	80	17	52	65	2	2	30	1.18
29958579--29958669	44	2.1	44	85	8	123	45	4	7	42	1.52
29958894--29958918	13	1.9	13	100	0	50	40	0	4	56	1.18
29958894--29958949	16	3.4	16	75	9	51	39	0	7	53	1.28
29964431--29964748	104	3.1	104	99	0	627	29	16	15	38	1.89
29981344--29981590	64	3.8	65	78	7	264	31	16	12	38	1.87
29986478--29986503	13	2.0	13	100	0	52	53	0	15	30	1.42
29987117--29987182	33	2.0	33	100	0	132	27	12	15	45	1.81
29991384--29991437	26	2.1	26	93	6	92	25	3	0	70	1.04
29993863--29993913	21	2.4	21	96	0	93	9	21	11	56	1.63
30002778--30002840	30	2.1	30	93	0	108	39	20	20	19	1.92
30002773--30002972	81	2.5	81	90	0	319	35	18	23	23	1.96
30003971--30004054	38	2.2	39	85	6	109	36	5	4	52	1.47
30010063--30010087	6	4.2	6	100	0	50	20	0	0	80	0.72
30011973--30012024	19	2.7	19	88	5	70	28	17	5	48	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30018657--30019253	44	12.8	45	71	9	227	32	15	21	30	1.94
30018606--30019032	96	4.5	96	78	9	442	34	16	19	29	1.94
30018508--30018775	147	1.8	146	87	0	401	35	16	16	31	1.91
30018559--30018775	51	4.4	51	80	6	266	35	17	15	31	1.91
30018903--30019255	44	7.8	44	77	8	325	31	15	22	30	1.95
30018903--30019254	89	3.9	89	75	8	293	31	15	22	30	1.94
30018903--30019254	133	2.6	134	82	7	399	31	15	22	30	1.94
30019172--30019286	44	2.6	44	88	2	151	28	16	22	32	1.96
30019185--30019286	44	2.3	44	89	3	152	28	15	25	30	1.96
30021753--30021830	3	26.3	3	75	10	72	33	3	1	61	1.22
30022263--30022581	112	2.9	109	92	2	507	29	17	19	33	1.95
30023951--30023994	19	2.3	20	88	7	65	27	20	13	38	1.90
30026049--30026115	9	7.6	9	90	9	111	80	8	0	10	0.90
30026049--30026115	17	3.8	18	90	9	111	80	8	0	10	0.90
30027006--30027054	15	3.3	15	74	23	50	71	0	14	14	1.15
30027006--30027054	22	2.2	22	86	13	66	71	0	14	14	1.15
30027006--30027045	8	5.2	8	85	14	50	75	0	12	12	1.06
30028266--30028359	45	2.1	45	84	4	118	30	25	22	21	1.98
30028310--30028750	88	5.0	88	79	6	387	30	22	23	24	1.99
30028310--30028733	175	2.4	176	79	3	428	29	22	22	24	1.99
30028800--30029841	44	23.8	44	72	11	459	30	19	21	28	1.97
30028893--30029617	129	5.6	129	74	10	560	30	19	21	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30029073--30029352	85	3.2	85	73	12	280	30	18	22	28	1.97
30028734--30029443	175	4.1	175	76	7	652	30	18	21	28	1.97
30029195--30029661	218	2.1	219	87	3	672	30	19	22	27	1.98
30029022--30029836	393	2.1	394	87	1	1150	30	19	21	27	1.98
30029375--30029861	87	5.6	86	71	12	330	30	20	21	26	1.98
30028847--30029886	175	6.0	175	80	8	885	31	19	21	27	1.97
30030568--30030604	6	6.2	6	87	12	58	13	0	2	83	0.74
30031364--30031428	3	21.7	3	80	9	71	33	3	1	61	1.21
30031861--30032179	112	2.9	110	92	2	525	29	17	19	33	1.94
30032593--30032784	101	1.9	101	87	5	280	23	18	27	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172