genome.fa.s22.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  165  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48742437--48742485	19	2.7	18	84	12	64	59	0	4	36	1.17
48743994--48744045	24	2.2	24	82	0	59	32	1	0	65	1.04
48746115--48746173	23	2.4	24	88	8	84	40	10	1	47	1.47
48746253--48746326	27	2.7	27	82	0	103	32	22	29	14	1.94
48746402--48746476	18	4.1	17	78	13	78	36	9	1	53	1.42
48746406--48746476	37	1.9	37	94	0	124	38	9	1	50	1.44
48746670--48746728	19	3.2	19	80	4	84	38	11	0	49	1.40
48746725--48746771	18	2.6	19	83	6	53	53	0	10	36	1.36
48746994--48747062	19	3.7	19	82	5	97	52	0	10	37	1.36
48747136--48747213	27	2.9	26	84	5	102	17	30	20	30	1.96
48747275--48747338	27	2.4	27	87	10	87	50	1	9	39	1.44
48749536--48749582	15	2.9	16	73	17	51	27	6	0	65	1.16
48750458--48750506	25	2.0	25	84	8	64	36	32	4	26	1.75
48754823--48754848	2	13.0	2	100	0	52	50	0	0	50	1.00
48756946--48756975	14	2.1	15	93	6	53	60	33	0	6	1.23
48764537--48764567	4	8.0	4	92	7	55	74	0	0	25	0.82
48770174--48770292	45	2.7	45	92	5	192	9	14	10	65	1.47
48770484--48770518	4	9.0	4	93	6	63	74	0	0	25	0.82
48771314--48771418	55	1.9	55	94	0	183	38	15	10	36	1.82
48778101--48778187	9	9.8	8	71	23	50	54	2	1	42	1.20
48778146--48778187	8	5.0	8	85	8	57	50	2	2	45	1.27
48778162--48778221	32	1.9	31	82	3	75	45	3	1	50	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48778101--48778224	48	2.6	45	79	11	124	50	2	0	45	1.20
48781598--48781628	4	7.8	4	100	0	62	74	0	0	25	0.82
48783274--48783315	17	2.5	17	100	0	84	23	35	23	16	1.95
48792339--48792365	13	2.1	13	100	0	54	22	14	14	48	1.81
48798937--48798995	17	3.4	17	78	19	59	59	0	1	38	1.08
48798949--48798995	18	2.5	19	87	12	71	57	0	2	40	1.11
48799654--48799718	31	2.1	31	82	5	78	26	7	13	52	1.67
48802281--48802311	16	1.9	16	93	0	53	54	3	3	38	1.32
48806463--48806530	17	3.9	18	81	12	79	63	2	1	32	1.18
48806466--48806531	9	7.6	9	70	24	52	65	1	1	31	1.11
48806633--48806702	19	3.7	18	70	11	59	62	1	2	32	1.18
48807204--48807286	10	8.7	9	77	16	62	31	3	3	61	1.30
48811462--48811508	24	2.0	24	84	12	62	51	4	2	42	1.33
48811740--48811778	20	2.0	20	85	10	53	20	0	2	76	0.90
48815409--48815436	3	9.3	3	100	0	56	67	0	32	0	0.91
48839258--48839314	30	2.0	30	82	6	73	45	1	14	38	1.55
48839727--48839767	12	3.3	12	93	3	64	29	2	0	68	1.03
48846959--48846990	15	2.2	15	94	5	57	50	0	0	50	1.00
48847134--48847182	21	2.3	21	82	6	55	38	2	6	53	1.38
48851144--48851181	19	2.0	19	85	10	51	39	5	2	52	1.38
48871453--48871517	31	2.2	29	81	15	71	53	4	3	38	1.37
48873985--48874048	27	2.3	29	81	5	78	60	4	4	29	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48875182--48875274	2	46.5	2	100	0	186	50	0	49	0	1.00
48875682--48875716	18	1.9	19	88	11	56	80	0	11	8	0.92
48876096--48876141	22	2.1	22	84	8	58	23	6	2	67	1.25
48876103--48876149	22	2.1	22	81	14	53	21	4	6	68	1.30
48884088--48884117	3	10.0	3	100	0	60	66	0	33	0	0.92
48884303--48884327	6	4.2	6	100	0	50	48	0	36	16	1.46
48887352--48887388	16	2.2	17	90	4	58	35	0	0	64	0.94
48890336--48890373	19	2.0	20	94	5	69	47	0	0	52	1.00
48902863--48902895	16	2.1	16	100	0	66	57	30	12	0	1.35
48903700--48903772	36	2.0	36	100	0	146	27	5	8	58	1.49
48904417--48904449	12	2.8	12	100	0	66	33	9	6	51	1.58
48908849--48908874	6	4.3	6	100	0	52	50	15	0	34	1.45
48914273--48914318	20	2.6	18	83	16	60	58	0	0	41	0.98
48914274--48914307	17	2.1	17	94	5	61	52	0	0	47	1.00
48914455--48914481	13	2.1	13	100	0	54	29	0	7	62	1.22
48914999--48915036	20	1.9	20	88	0	58	44	13	2	39	1.57
48917323--48917354	16	2.1	15	94	5	55	53	12	0	34	1.39
48920087--48920224	62	2.2	62	88	1	197	34	5	18	42	1.73
48926440--48926470	16	1.9	16	93	0	53	48	9	6	35	1.62
48926554--48926602	19	2.6	19	90	0	71	40	2	2	55	1.23
48926572--48926614	19	2.3	19	83	0	50	46	2	0	51	1.13
48931394--48931423	14	2.1	14	100	0	60	50	6	6	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48935747--48935791	20	2.3	19	85	11	63	44	2	2	51	1.26
48938109--48938155	3	15.7	3	90	0	76	0	29	4	65	1.11
48941083--48941142	19	3.3	18	77	9	68	26	3	5	65	1.29
48941506--48941553	23	2.1	23	92	0	78	41	4	10	43	1.58
48945359--48945386	3	9.3	3	100	0	56	64	0	0	35	0.94
48950653--48950704	18	2.9	18	82	0	59	26	21	30	21	1.98
48961586--48961673	42	2.1	42	100	0	176	34	11	21	32	1.89
48963926--48963965	3	13.3	3	100	0	80	32	0	0	67	0.91
48973597--48973660	13	4.9	13	73	7	58	37	18	7	35	1.80
48973597--48973660	26	2.5	26	76	0	74	37	18	7	35	1.80
48979243--48979307	31	2.1	32	85	2	87	49	15	3	32	1.60
48981596--48981653	20	2.9	20	71	5	55	39	3	6	50	1.46
48983045--48983108	27	2.4	28	73	7	69	34	6	9	50	1.60
48997149--48997200	23	2.4	20	79	20	52	34	1	7	55	1.39
49001772--49001816	22	2.0	22	86	0	63	42	20	24	13	1.87
49003111--49003205	40	2.3	40	89	3	136	1	28	7	63	1.28
49003217--49003275	5	12.2	5	81	18	72	59	0	0	40	0.97
49003223--49003275	13	3.8	13	81	13	70	60	0	0	39	0.97
49003215--49003275	29	2.0	31	90	6	99	59	0	0	40	0.98
49003223--49003284	13	4.5	13	76	11	61	61	1	0	37	1.06
49003217--49003275	24	2.5	23	88	5	82	59	0	0	40	0.97
49013427--49013462	19	1.9	19	88	5	56	69	11	11	8	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49017868--49017951	42	2.0	42	82	13	102	46	0	4	48	1.23
49021037--49021105	33	2.1	33	97	0	129	50	15	14	18	1.78
49022928--49023018	3	30.3	3	76	8	78	29	7	2	60	1.36
49022934--49023018	12	6.8	12	81	7	89	30	8	2	58	1.40
49023154--49023222	34	2.0	34	85	5	93	36	5	1	56	1.32
49023318--49023352	13	2.6	13	90	4	52	17	2	0	80	0.84
49035602--49035930	46	7.6	44	73	13	213	31	21	20	26	1.98
49035815--49035926	44	2.6	44	81	7	120	29	24	21	25	1.99
49036983--49037017	13	2.6	13	90	4	52	17	2	0	80	0.84
49041433--49041558	22	5.3	24	81	8	127	15	25	20	38	1.92
49044001--49044045	21	2.1	22	84	12	58	51	6	33	8	1.59
49045017--49045079	30	2.1	30	93	0	108	57	14	3	25	1.52
49045056--49045088	17	1.9	17	88	11	50	69	3	0	27	1.03
49045104--49045142	11	3.5	11	78	0	51	56	7	15	20	1.63
49052102--49052212	55	2.0	55	100	0	222	54	16	1	27	1.51
49053586--49053648	4	15.8	4	100	0	126	50	25	0	23	1.49
49059199--49059237	21	2.0	21	85	10	55	56	2	0	41	1.13
49072375--49072416	22	1.9	22	95	0	75	69	7	0	23	1.13
49083331--49083397	31	2.1	31	81	8	73	29	8	7	53	1.59
49087115--49087185	32	2.2	31	79	16	74	53	2	1	42	1.24
49087391--49087477	45	1.9	45	90	4	140	54	3	0	42	1.17
49103218--49103266	23	2.2	22	81	3	53	38	8	0	53	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49103864--49103915	18	2.8	19	77	11	54	46	3	13	36	1.62
49103874--49103936	29	2.2	29	82	5	74	44	6	11	38	1.66
49118727--49118847	31	3.9	31	75	13	101	43	1	3	51	1.28
49118804--49118866	31	2.0	31	96	0	117	34	1	7	55	1.39
49119061--49119098	17	2.2	17	100	0	76	39	5	10	44	1.61
49121847--49121888	15	2.6	16	81	14	50	38	0	9	52	1.34
49144458--49144490	14	2.4	14	94	0	57	60	9	0	30	1.27
49146058--49146119	26	2.2	29	83	8	76	37	11	3	48	1.55
49146179--49146230	27	1.9	27	88	0	77	32	21	26	19	1.97
49146304--49146373	19	3.7	19	82	3	97	37	10	0	52	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172