genome.fa.s22.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  107  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30868253--30868300	24	2.0	24	100	0	96	12	16	8	62	1.53
30869846--30870186	45	7.6	44	73	12	230	38	18	18	24	1.93
30869833--30870200	135	2.7	133	76	9	345	39	17	18	24	1.92
30869833--30870207	90	4.2	90	81	1	421	38	18	18	24	1.92
30870085--30870228	45	3.2	45	74	9	141	40	17	18	23	1.91
30870749--30870967	28	7.9	28	82	3	228	58	6	13	21	1.57
30870749--30870967	55	3.9	56	81	7	250	58	6	13	21	1.57
30870751--30870967	83	2.6	84	81	5	255	59	5	12	21	1.55
30876815--30876849	12	2.9	12	84	16	54	17	0	5	77	0.96
30876827--30876877	9	5.2	10	81	13	54	19	5	3	70	1.24
30876832--30876949	21	5.9	20	70	17	59	23	7	5	63	1.41
30876913--30876951	3	13.0	3	100	0	78	33	0	0	66	0.92
30878448--30878489	12	3.7	12	78	12	52	14	2	9	73	1.18
30883896--30883966	21	3.5	20	77	7	63	33	7	5	53	1.51
30884311--30884422	57	2.0	57	90	0	179	45	8	12	33	1.71
30884334--30884420	29	3.0	29	67	21	74	47	6	11	34	1.67
30884807--30884877	37	1.9	37	94	0	124	38	18	1	42	1.59
30885340--30885379	16	2.5	16	91	0	62	47	2	7	42	1.45
30885346--30885510	68	2.6	65	87	8	216	41	4	9	45	1.55
30885368--30885510	68	2.1	67	93	2	252	41	4	9	44	1.57
30885452--30885479	9	3.1	9	100	0	56	32	0	10	57	1.33
30885579--30885624	24	1.9	24	91	8	76	60	2	0	36	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30889627--30889662	18	2.0	18	88	0	54	19	38	22	19	1.93
30892045--30892149	49	2.1	50	85	5	151	20	26	38	14	1.91
30899172--30899254	32	2.6	32	81	7	89	20	26	36	16	1.94
30900593--30900756	40	4.1	40	90	0	265	12	15	28	43	1.82
30901540--30901602	32	2.0	32	81	12	76	17	22	42	17	1.89
30912173--30912206	15	2.2	16	89	5	52	82	0	17	0	0.67
30912173--30912224	16	3.3	16	82	10	54	75	1	19	3	1.06
30912614--30912679	34	1.9	34	84	6	89	46	15	6	31	1.70
30914105--30914157	13	3.9	14	78	7	56	35	18	5	39	1.75
30915157--30915279	63	1.9	64	86	1	176	27	23	24	24	2.00
30915524--30915672	76	2.0	76	94	0	262	32	13	26	28	1.94
30915941--30916278	109	3.1	109	93	1	565	34	16	16	32	1.92
30923059--30923220	76	2.1	76	98	0	315	31	15	27	25	1.96
30923489--30923827	109	3.1	109	96	0	610	33	17	17	30	1.93
30924434--30924463	3	10.0	3	100	0	60	66	0	0	33	0.92
30926410--30926460	26	2.0	26	96	0	93	35	9	15	39	1.81
30926418--30926469	26	2.0	26	92	0	86	32	13	17	36	1.89
30929849--30929909	32	1.9	32	83	6	79	45	1	3	49	1.28
30940146--30940172	13	2.1	13	100	0	54	62	14	7	14	1.51
30941489--30941541	21	2.4	22	81	9	63	43	1	0	54	1.11
30941644--30941680	15	2.6	15	87	8	51	43	0	2	54	1.14
30941653--30941696	21	2.2	19	84	8	52	40	2	0	56	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30943452--30943824	114	3.3	114	77	5	423	34	17	20	27	1.95
30943436--30943915	113	4.2	114	76	6	429	33	17	21	27	1.96
30943436--30943914	227	2.1	227	90	2	757	33	17	21	27	1.96
30946698--30946791	44	2.1	45	92	2	154	19	7	22	51	1.71
30946707--30946806	44	2.3	44	84	8	132	20	7	21	52	1.70
30948016--30948065	17	3.2	17	78	21	72	36	6	6	52	1.51
30948034--30948061	13	2.2	13	100	0	56	39	7	7	46	1.59
30948057--30948095	16	2.5	15	88	8	60	41	0	5	53	1.23
30948027--30948175	62	2.4	61	80	4	165	36	5	10	46	1.61
30948312--30948667	9	40.8	9	73	13	275	45	19	1	32	1.62
30948312--30948525	73	3.1	71	83	13	291	47	18	2	30	1.63
30948312--30948525	100	2.1	100	97	0	401	47	18	2	30	1.63
30948602--30948674	32	2.2	33	90	4	112	45	19	1	34	1.59
30954185--30954255	21	3.4	21	82	7	90	32	18	46	2	1.63
30954579--30954818	42	5.7	42	91	0	363	32	21	23	22	1.98
30956409--30956522	35	3.2	35	91	3	185	14	12	35	37	1.84
30964314--30964526	67	3.2	66	65	19	159	47	3	3	46	1.35
30964270--30964528	137	1.9	138	90	0	421	47	3	3	45	1.38
30964418--30964452	18	2.0	17	88	5	52	45	0	0	54	0.99
30964304--30964518	70	3.1	69	66	11	170	46	3	3	46	1.36
30964303--30964621	137	2.3	138	81	8	339	46	4	3	45	1.41
30964394--30964721	156	2.1	156	96	0	602	46	6	3	42	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30964574--30964622	15	2.9	18	80	20	61	44	0	0	55	0.99
30964574--30964628	15	3.4	16	80	16	53	43	0	1	54	1.10
30964842--30964896	16	3.4	16	89	2	83	40	32	0	27	1.57
30967158--30967200	18	2.4	18	92	7	70	51	2	0	46	1.13
30972747--30972929	97	1.9	100	86	5	266	46	3	3	46	1.37
30972999--30973335	116	2.9	115	93	3	554	40	6	7	46	1.56
30974980--30975039	13	4.7	13	80	13	63	26	0	0	73	0.84
30974981--30975049	26	2.7	25	82	10	70	26	1	0	72	0.93
30977609--30977638	13	2.3	13	94	0	51	73	0	20	6	1.05
30983789--30983822	17	2.0	17	88	0	50	41	0	2	55	1.15
30984957--30985094	37	3.5	37	88	8	177	26	18	17	36	1.93
30985012--30985424	46	8.6	46	89	6	520	28	22	14	34	1.93
30985154--30985424	98	2.8	92	87	7	346	28	22	14	33	1.94
30985029--30985410	196	1.9	196	93	0	656	28	21	14	34	1.94
30988166--30988201	17	2.1	16	90	10	54	19	5	0	75	1.00
30988162--30988206	24	1.9	23	86	4	63	22	4	0	73	1.01
30988223--30988265	3	14.3	3	100	0	86	34	0	0	65	0.93
30993306--30993373	27	2.6	25	81	11	82	25	0	29	45	1.54
30993335--30993412	20	3.8	20	76	14	79	21	0	29	48	1.50
30994955--30995000	21	2.3	20	82	10	58	26	2	28	43	1.66
30994948--30994999	27	1.9	27	84	7	70	26	1	26	44	1.65
30994996--30995081	34	2.5	35	83	5	95	19	1	30	48	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30995113--30995146	7	4.7	7	88	3	50	29	14	26	29	1.95
31000850--31000877	4	7.0	4	100	0	56	25	0	0	75	0.81
31001602--31001633	16	2.0	16	100	0	64	37	18	6	37	1.76
31005895--31005927	10	3.2	11	87	12	52	18	15	0	66	1.25
31013999--31014157	44	3.6	43	85	6	194	32	19	20	27	1.97
31013945--31014322	94	4.1	95	74	11	309	31	18	19	30	1.96
31014043--31014516	232	2.0	232	81	3	560	31	17	19	32	1.95
31014181--31014464	138	2.1	138	82	2	338	32	16	18	32	1.94
31015820--31015890	24	3.0	24	87	2	99	45	5	28	21	1.74
31018180--31018204	7	3.6	7	100	0	50	76	0	0	24	0.80
31022247--31022344	38	2.6	38	73	9	92	31	23	19	25	1.98
31024693--31024725	17	2.0	17	88	5	50	36	24	0	39	1.56
31033142--31033219	29	2.6	31	80	10	81	35	7	8	47	1.64
31033818--31033870	23	2.3	23	84	12	74	58	7	1	32	1.37
31037628--31037674	21	2.3	21	85	3	60	63	6	6	23	1.41
31037640--31037685	20	2.3	20	82	10	58	67	2	6	23	1.25
31037965--31037990	2	13.0	2	100	0	52	50	0	0	50	1.00
31054247--31054315	30	2.3	30	92	0	111	18	28	34	17	1.94
31060198--31060381	63	2.9	64	83	4	214	32	23	31	11	1.91
31060626--31060668	12	3.5	12	81	6	50	27	9	2	60	1.40
31060626--31060658	13	2.6	13	85	4	50	24	6	3	66	1.28
31060697--31060742	18	2.6	18	83	10	58	4	15	4	76	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31061746--31061771	10	2.6	10	100	0	52	73	7	7	11	1.26
31074020--31074097	41	1.9	41	97	0	147	19	14	16	50	1.79
31077758--31077784	14	1.9	14	100	0	54	40	7	14	37	1.74
31080383--31080458	33	2.3	32	80	12	84	44	19	9	26	1.80
31080483--31080522	14	2.9	14	84	0	53	42	17	7	32	1.77
31080448--31080514	34	1.9	35	87	3	100	46	11	8	32	1.72
31087289--31087698	205	2.0	205	99	0	811	49	13	10	26	1.74
31090988--31091121	56	2.4	56	96	1	243	33	4	14	47	1.65
31093689--31093804	54	2.1	54	85	4	153	50	5	9	35	1.57
31097241--31097283	18	2.4	18	100	0	86	16	25	4	53	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172