genome.fa.s22.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  36  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9030034--9030084	23	2.3	23	86	6	70	39	0	5	54	1.24
9030053--9030099	10	4.6	10	76	12	51	36	2	2	59	1.21
9041017--9041149	62	2.2	58	86	7	178	49	4	3	42	1.41
9041567--9041615	9	5.4	9	90	0	71	36	24	10	28	1.88
9041558--9041615	27	2.1	27	87	0	80	39	22	8	29	1.84
9041664--9041705	21	2.0	21	95	0	75	35	0	4	59	1.19
9042560--9042616	26	2.1	27	84	9	73	66	3	29	0	1.08
9049507--9049535	14	2.0	15	93	6	51	27	3	13	55	1.55
9051800--9051850	17	2.9	17	82	8	59	58	3	15	21	1.53
9052055--9052096	20	2.2	18	87	8	57	50	0	4	45	1.23
9055634--9055692	30	2.0	30	83	6	75	45	3	20	30	1.67
9058243--9058273	9	3.4	9	90	0	53	38	22	12	25	1.90
9058903--9059102	57	3.4	57	88	5	276	31	21	25	21	1.98
9059229--9059360	67	2.0	67	95	0	237	22	18	31	27	1.98
9060572--9060705	44	3.0	44	78	5	144	42	15	18	23	1.88
9068268--9068316	19	2.5	19	80	9	55	26	10	2	61	1.39
9081271--9081338	30	2.3	30	97	0	127	29	39	8	22	1.84
9090054--9090087	15	2.2	16	89	5	52	41	5	14	38	1.70
9090069--9090132	20	3.2	20	84	0	83	37	9	18	34	1.83
9094498--9094552	16	3.4	15	79	20	58	72	1	23	1	1.04
9094500--9094549	17	2.9	17	85	11	66	72	2	24	2	1.06
9097277--9097333	18	3.2	17	78	7	60	7	12	3	77	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9097759--9097801	22	2.0	22	85	0	59	30	6	2	60	1.35
9097766--9097810	22	2.0	22	86	0	63	33	2	2	62	1.20
9102976--9103033	17	3.5	17	90	4	93	24	24	5	46	1.72
9106567--9106616	17	2.9	17	93	0	91	24	26	6	44	1.76
9107909--9107985	34	2.3	33	82	10	102	44	1	11	42	1.49
9108038--9108559	125	4.2	125	88	1	697	37	16	16	29	1.90
9111844--9111886	18	2.4	18	88	0	59	44	9	25	20	1.81
9113414--9113465	25	2.1	24	82	10	61	65	1	5	26	1.26
9117995--9118074	31	2.5	34	78	13	89	55	0	1	43	1.08
9117993--9118065	30	2.4	33	82	13	93	57	0	1	41	1.07
9123104--9123170	28	2.4	28	94	2	116	41	8	31	17	1.81
9127131--9127165	6	5.8	6	93	0	61	82	0	2	14	0.77
9127441--9127466	6	4.3	6	100	0	52	80	0	0	19	0.71
9128448--9128476	11	2.5	12	94	5	51	58	0	3	37	1.15
9128448--9128494	25	2.0	25	83	8	62	55	0	4	40	1.19
9129330--9129360	5	6.2	5	100	0	62	38	19	19	22	1.93
9129869--9129920	16	3.0	16	83	13	59	44	0	32	23	1.54
9136045--9136075	8	3.9	8	100	0	62	51	22	0	25	1.48
9136228--9136268	22	1.9	22	90	5	66	29	2	0	68	1.03
9136496--9136563	32	2.1	31	81	10	75	33	1	4	60	1.26
9139401--9139439	21	1.9	21	85	15	55	35	7	15	41	1.76
9143717--9143761	22	2.0	22	83	8	56	26	8	31	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9148008--9148036	11	2.5	12	94	5	51	58	0	3	37	1.15
9148006--9148057	23	2.3	23	77	12	54	50	1	5	42	1.37
9148451--9148480	9	3.3	9	90	0	51	23	13	23	40	1.90
9148776--9148835	30	2.0	31	83	9	79	20	38	0	41	1.52
9149090--9149118	9	3.2	9	100	0	58	31	0	0	68	0.89
9149675--9149735	30	2.0	30	100	0	122	29	9	9	50	1.67
9149694--9149784	39	2.4	39	96	3	168	32	6	7	52	1.56
9150978--9151038	29	2.1	29	84	6	79	40	8	8	42	1.64
9154283--9154365	39	2.1	38	84	4	103	30	10	12	46	1.75
9154441--9155368	464	2.0	464	98	0	1811	29	21	20	27	1.98
9156069--9156111	21	2.0	21	95	0	77	30	25	9	34	1.87
9160947--9161105	38	4.1	38	80	8	135	33	9	10	45	1.71
9168468--9168511	22	2.0	23	95	4	81	52	0	0	47	1.00
9177282--9177361	31	2.5	34	78	13	89	55	0	1	43	1.08
9177280--9177352	30	2.4	33	82	13	93	57	0	1	41	1.07
9182389--9182455	28	2.4	28	94	2	116	41	8	31	17	1.81
9186414--9186447	6	5.7	6	92	0	59	82	0	2	14	0.79
9187730--9187758	11	2.5	12	94	5	51	58	0	3	37	1.15
9187730--9187776	25	2.0	25	83	8	62	55	0	4	40	1.19
9188612--9188642	5	6.2	5	100	0	62	38	19	19	22	1.93
9189149--9189200	16	3.0	16	83	13	59	44	0	32	23	1.54
9196472--9196500	11	2.5	12	94	5	51	58	0	3	37	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9196919--9196949	9	3.4	9	90	0	53	25	12	22	38	1.90
9197542--9197570	9	3.2	9	100	0	58	31	0	0	68	0.89
9197542--9197612	18	4.1	17	78	8	63	35	1	7	56	1.35
9198122--9198182	30	2.0	30	100	0	122	29	9	9	50	1.67
9198141--9198230	38	2.4	39	94	5	159	33	6	7	52	1.56
9199421--9199481	29	2.1	29	84	6	79	40	8	8	42	1.64
9201149--9201186	17	2.2	18	81	13	53	63	0	2	34	1.09
9201153--9201186	8	4.1	8	88	7	50	61	0	2	35	1.11
9210631--9210681	15	3.5	15	81	5	52	47	3	3	45	1.40
9213675--9213809	40	3.4	40	81	0	153	42	28	16	13	1.85
9214706--9214757	27	1.9	27	96	0	95	38	7	23	30	1.83
9218784--9218819	15	2.4	15	95	0	63	36	19	16	27	1.93
9222825--9222947	13	9.4	13	72	11	72	35	18	3	42	1.67
9223047--9223163	45	2.6	44	91	0	180	23	17	16	43	1.87
9224107--9224157	22	2.3	22	80	6	59	54	11	13	19	1.69
9224886--9225053	63	2.7	61	81	9	178	26	29	21	22	1.99
9227467--9227605	45	3.1	45	82	4	156	42	14	14	28	1.85
9232859--9233003	78	1.9	77	88	4	220	34	17	20	28	1.95
9246572--9246611	20	2.0	20	85	0	53	45	10	10	35	1.71
9247018--9247077	21	3.0	20	80	4	75	36	13	10	40	1.78
9247015--9247103	41	2.2	40	82	6	108	39	12	10	38	1.77
9247217--9247255	20	2.0	20	94	0	69	48	2	5	43	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9254198--9254249	19	2.8	19	88	8	72	40	0	5	53	1.25
9254485--9254540	19	3.0	20	80	10	57	30	1	12	55	1.47
9262004--9262053	20	2.7	18	81	15	57	42	0	4	54	1.19
9262278--9262314	17	2.1	19	85	10	51	67	0	8	24	1.17
9262906--9262953	12	4.1	12	74	15	55	75	0	2	22	0.91
9263067--9263459	210	1.9	212	90	1	628	26	16	16	40	1.89
9264495--9264817	171	1.9	171	91	1	531	39	22	12	25	1.89
9267831--9267897	26	2.6	26	86	6	91	38	23	20	16	1.92
9271936--9272434	249	2.0	248	96	0	908	36	22	10	29	1.88
9274930--9275071	25	5.8	25	72	6	94	33	19	26	20	1.97
9274989--9275049	24	2.6	23	76	7	68	39	22	21	16	1.92
9275100--9275168	26	2.7	25	80	6	84	42	20	21	15	1.89
9275086--9275159	26	2.9	26	78	6	89	36	21	22	18	1.95
9278048--9278100	18	2.9	19	72	27	53	62	1	1	33	1.17
9280323--9280390	28	2.4	28	90	4	102	41	10	1	47	1.47
9280445--9280530	27	3.2	27	84	0	118	29	29	25	16	1.97
9280455--9280546	27	3.4	26	75	14	80	27	27	27	18	1.98
9280795--9280862	3	22.7	3	96	0	127	0	0	33	66	0.92
9281013--9281089	36	2.2	35	81	11	95	35	0	10	54	1.35
9286131--9286182	26	2.0	26	96	0	95	19	21	30	28	1.97
9286157--9286374	81	2.8	77	83	5	251	24	19	23	33	1.97
9288958--9288989	15	2.1	15	100	0	64	40	6	0	53	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9290196--9290443	10	24.3	10	64	20	77	0	29	0	70	0.87
9290257--9290470	4	51.0	4	72	20	129	0	30	0	69	0.89
9290226--9290470	39	6.4	39	82	15	291	0	29	0	70	0.88
9290202--9290469	37	7.3	35	76	20	205	0	29	0	70	0.88
9290197--9290470	79	3.6	79	89	7	383	0	29	0	70	0.88
9290228--9290393	16	10.8	16	70	21	108	0	28	0	71	0.87
9290512--9290581	27	2.6	27	93	4	115	15	28	28	27	1.96
9290512--9290590	27	2.9	27	88	0	113	15	30	27	26	1.96
9290636--9290660	8	3.1	8	100	0	50	12	0	0	88	0.53
9290657--9290721	24	2.6	25	87	9	96	46	1	10	41	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172