genome.fa.s22.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  144  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41648559--41648752	51	3.8	50	88	1	271	27	23	29	19	1.98
41648571--41648752	101	1.8	101	89	4	287	26	23	29	19	1.98
41655702--41655759	30	1.9	30	89	0	89	41	3	24	31	1.71
41655971--41656002	13	2.5	13	94	0	55	31	0	12	56	1.37
41656097--41656339	50	4.8	50	90	2	371	26	23	30	19	1.98
41656097--41656339	99	2.4	100	91	2	380	26	23	30	19	1.98
41657251--41657362	52	2.2	52	92	6	185	36	14	16	33	1.88
41658443--41658489	22	2.1	22	84	0	58	21	25	12	40	1.89
41663719--41663785	20	3.3	20	72	4	55	53	8	19	17	1.70
41664632--41664723	44	2.1	44	97	0	175	33	14	14	38	1.86
41667434--41667458	3	8.3	3	100	0	50	32	0	0	68	0.90
41668945--41669000	28	2.0	28	96	0	103	41	14	16	28	1.87
41671143--41671189	22	2.3	20	82	13	60	65	0	2	31	1.04
41671145--41671191	21	2.2	22	88	3	69	70	0	2	27	0.99
41674363--41674442	41	2.0	41	85	5	108	25	13	13	47	1.80
41684304--41684346	16	2.7	16	82	10	52	41	2	0	55	1.12
41684601--41684649	21	2.4	22	80	16	61	38	0	2	59	1.09
41684614--41684666	21	2.5	22	81	12	65	41	0	1	56	1.10
41684961--41685018	22	2.6	22	80	17	66	72	0	27	0	0.85
41684969--41685015	14	3.4	14	82	2	51	72	0	27	0	0.85
41685182--41685300	60	2.0	60	94	0	211	33	0	12	53	1.39
41685854--41685894	22	1.9	22	85	5	57	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41690531--41690558	8	3.5	8	100	0	56	10	21	14	53	1.70
41694641--41694698	30	1.9	30	89	0	89	41	3	24	31	1.71
41694910--41694941	13	2.5	13	94	0	55	31	0	12	56	1.37
41695036--41695277	50	4.7	50	86	4	297	26	24	29	19	1.99
41695036--41695285	100	2.4	103	88	6	364	26	24	29	20	1.99
41700194--41700433	50	4.8	50	92	0	390	25	23	30	20	1.98
41702096--41702150	22	2.3	23	79	17	60	49	3	0	47	1.19
41704153--41704390	41	5.8	41	78	7	218	17	23	23	35	1.95
41704159--41704390	82	2.8	82	80	2	252	17	23	23	35	1.95
41704153--41704390	123	1.9	123	81	6	286	17	23	23	35	1.95
41705660--41705722	29	2.2	27	78	15	65	15	1	44	38	1.57
41709594--41709759	66	2.5	65	86	4	217	40	19	25	13	1.88
41709735--41709807	21	3.5	21	76	0	74	36	16	41	5	1.72
41709748--41709847	42	2.4	42	84	0	119	36	14	43	7	1.72
41709794--41709847	21	2.6	21	87	0	81	33	12	46	7	1.70
41710185--41710306	43	2.8	43	80	2	138	22	17	31	28	1.96
41710270--41710413	43	3.3	43	87	0	198	25	26	22	25	2.00
41710296--41710432	43	3.2	43	87	1	186	28	30	19	21	1.97
41712865--41712909	22	2.0	24	83	16	60	60	8	11	20	1.57
41714473--41714524	21	2.5	21	81	3	61	51	0	0	48	1.00
41714479--41714537	21	2.8	21	80	12	66	59	0	0	40	0.97
41714495--41714530	18	1.9	19	88	5	56	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41714816--41714864	23	2.3	21	83	13	57	34	0	14	51	1.43
41715204--41715254	21	2.3	21	83	6	57	39	5	1	52	1.37
41720537--41720578	22	2.0	22	85	4	59	50	11	14	23	1.76
41728371--41728445	18	4.2	18	87	0	105	32	16	24	28	1.96
41730434--41730484	16	3.2	16	80	5	59	49	0	7	43	1.32
41730442--41730524	35	2.4	34	86	4	112	53	0	8	38	1.32
41735334--41735359	3	8.7	3	100	0	52	34	34	0	30	1.58
41737247--41737275	2	15.0	2	92	7	51	48	0	0	51	1.00
41737247--41737272	13	2.0	13	100	0	52	46	0	0	53	1.00
41738440--41738526	43	2.1	41	86	4	120	37	5	16	40	1.72
41746679--41746710	13	2.5	13	100	0	64	71	0	6	21	1.07
41746823--41746856	16	2.1	16	88	0	50	35	14	0	50	1.44
41749623--41749649	2	13.5	2	100	0	54	51	0	48	0	1.00
41751550--41751590	18	2.2	20	86	8	59	63	7	7	21	1.45
41751560--41751598	18	2.1	18	85	4	51	61	10	2	25	1.41
41752414--41752469	28	2.0	28	100	0	112	25	10	25	39	1.87
41762113--41762181	25	2.7	25	76	13	68	55	7	0	37	1.28
41765819--41765858	20	2.1	20	86	9	57	40	0	0	60	0.97
41767277--41767447	84	2.0	84	95	0	306	31	9	14	43	1.78
41771896--41771959	21	3.1	21	76	14	71	62	3	4	29	1.31
41776106--41776145	13	2.8	15	77	14	57	70	0	0	30	0.88
41780726--41780757	13	2.5	13	94	0	55	31	0	12	56	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41780852--41781093	50	4.7	50	83	6	272	26	23	28	20	1.99
41780852--41781101	100	2.4	103	86	6	337	26	23	28	21	1.99
41783211--41783263	23	2.4	22	76	20	56	9	18	1	69	1.25
41787786--41788628	419	2.0	419	100	0	1686	33	17	19	29	1.95
41792153--41792219	32	2.1	32	100	0	134	40	26	17	14	1.89
41803353--41803389	17	2.2	17	90	9	58	2	18	0	78	0.87
41807195--41807271	6	12.5	6	72	15	50	3	20	5	70	1.23
41807195--41807271	11	6.2	12	72	14	50	3	20	5	70	1.23
41807186--41807222	17	2.1	18	90	5	58	0	27	0	72	0.84
41807291--41807323	5	6.8	5	93	6	59	57	0	0	42	0.98
41807291--41807358	12	5.2	14	72	24	60	52	1	1	44	1.19
41807288--41807356	10	6.3	10	74	21	50	52	1	1	44	1.19
41807904--41807986	11	6.8	12	75	13	71	3	18	4	73	1.16
41807904--41807986	6	13.5	6	73	14	71	3	18	4	73	1.16
41806636--41808077	716	2.0	711	93	2	2433	33	16	5	45	1.70
41810308--41810358	21	2.4	21	96	0	93	54	5	29	9	1.56
41828071--41828096	12	2.2	12	100	0	52	76	0	7	15	0.99
41828131--41828186	8	6.5	8	74	22	51	71	1	1	25	1.05
41828131--41828186	17	3.2	17	80	11	69	71	1	1	25	1.05
41828131--41828217	9	9.4	9	72	17	63	67	2	2	27	1.14
41828370--41828478	9	11.5	10	70	15	54	27	2	2	66	1.18
41828369--41828437	18	3.9	18	73	14	63	28	1	1	68	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41828415--41828458	19	2.2	19	84	8	52	18	4	4	72	1.19
41836572--41836616	11	4.1	11	88	0	72	20	33	2	44	1.63
41836572--41836632	22	2.8	22	87	5	79	22	32	1	42	1.64
41836572--41836634	33	1.9	33	87	12	94	23	31	1	42	1.64
41836596--41836693	51	1.9	51	87	4	144	27	25	2	44	1.65
41838513--41838925	125	3.3	125	90	0	630	29	18	18	33	1.95
41842010--41842045	17	2.1	17	94	0	63	41	8	0	50	1.33
41842144--41842179	17	2.0	19	89	10	58	72	5	5	16	1.23
41842930--41842965	16	2.2	16	100	0	72	25	0	36	38	1.56
41842946--41843036	45	2.0	45	85	2	121	27	6	28	37	1.82
41843182--41843236	15	3.4	16	80	16	53	54	1	0	43	1.10
41843188--41843236	16	2.9	18	80	20	61	55	0	0	44	0.99
41843284--41843496	67	3.1	67	65	20	163	46	4	3	46	1.38
41843089--41843416	156	2.1	156	97	0	611	42	3	6	46	1.47
41843358--41843392	18	2.0	17	88	5	52	54	0	0	45	0.99
41843275--41843534	137	1.9	137	91	1	387	44	4	4	46	1.42
41843296--41843574	137	2.0	135	82	8	332	45	5	3	45	1.44
41845805--41845986	37	5.0	37	92	1	296	24	21	15	37	1.93
41845951--41846317	46	7.6	46	86	7	437	29	22	14	34	1.93
41845994--41846311	52	6.3	52	86	7	426	28	22	13	34	1.93
41845951--41846303	196	1.8	196	92	0	598	28	22	14	34	1.93
41845951--41846317	98	3.7	97	84	9	492	29	22	14	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41849889--41850199	145	2.2	145	96	0	570	35	9	8	47	1.66
41850116--41850239	63	2.0	64	93	1	214	31	8	8	50	1.64
41861535--41861572	18	2.2	18	90	9	62	71	2	5	21	1.19
41864716--41864742	7	3.9	7	100	0	54	44	0	0	55	0.99
41865197--41865247	25	2.1	25	85	7	70	56	11	0	31	1.35
41866102--41866131	11	2.7	11	100	0	60	56	6	26	10	1.57
41866567--41866639	33	2.2	33	90	0	110	16	27	38	17	1.91
41870022--41870101	22	3.7	22	90	6	112	37	8	17	36	1.81
41871747--41872083	51	6.7	51	75	12	290	29	26	16	27	1.96
41871997--41872079	26	3.2	26	66	27	68	32	27	12	27	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172