genome.fa.s22.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  114  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32724169--32724231	31	2.0	32	84	6	83	61	0	1	36	1.05
32724219--32724271	10	5.2	10	82	10	63	66	0	1	32	1.03
32724225--32724271	11	4.3	11	80	0	58	65	0	2	31	1.04
32724223--32724292	21	3.3	22	82	13	85	62	0	2	34	1.10
32724228--32724300	21	3.6	19	77	15	76	63	0	2	34	1.09
32724260--32724316	29	2.0	29	86	6	80	63	0	1	35	1.05
32724172--32724310	39	3.5	39	73	16	133	63	0	2	34	1.07
32729738--32729817	41	2.0	41	94	0	142	51	10	6	32	1.60
32733581--32733664	44	2.0	43	86	6	118	50	11	5	32	1.63
32733705--32733740	18	1.9	19	94	5	65	44	13	0	41	1.44
32735971--32736095	60	2.1	61	93	1	216	28	15	22	33	1.94
32740739--32740776	19	2.0	20	84	5	51	34	2	7	55	1.43
32742848--32742908	31	2.0	31	83	0	77	37	6	3	52	1.44
32754619--32754668	24	2.1	24	85	3	66	58	12	4	26	1.51
32770593--32770637	21	2.1	22	84	12	58	66	8	11	13	1.44
32773434--32773707	35	8.1	34	83	6	308	41	17	21	18	1.90
32773434--32773667	67	3.5	66	88	3	319	41	17	22	18	1.91
32773444--32773707	102	2.6	102	90	1	399	40	17	22	18	1.91
32773444--32773707	67	3.9	65	85	7	305	40	17	22	18	1.91
32774360--32774404	20	2.1	22	84	12	58	13	11	8	66	1.44
32779052--32779083	16	2.0	16	93	0	55	40	6	9	43	1.62
32779308--32779755	51	8.8	51	76	5	392	30	14	25	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32779305--32779755	102	4.4	102	88	1	613	30	14	25	30	1.94
32799331--32799362	10	3.1	11	82	17	50	0	18	0	81	0.70
32799331--32799364	14	2.4	14	90	9	52	0	17	0	82	0.67
32823352--32823410	30	2.0	30	82	0	73	33	22	8	35	1.84
32832454--32832561	55	2.0	54	94	1	189	39	9	11	39	1.73
32835047--32835210	43	3.9	42	77	15	185	20	18	28	31	1.97
32838992--32839032	20	2.0	20	100	0	82	48	24	4	21	1.69
32843299--32843328	6	4.8	6	95	4	51	13	0	0	86	0.57
32843285--32843329	19	2.3	19	85	11	56	11	4	2	82	0.91
32846035--32846066	14	2.3	14	100	0	64	28	0	25	46	1.53
32849153--32849313	80	2.0	80	87	2	234	26	15	19	39	1.91
32850656--32850717	24	2.6	23	75	12	63	46	0	1	51	1.10
32856501--32856539	20	2.0	20	85	10	53	58	5	0	35	1.20
32856757--32856807	25	1.9	26	84	11	68	58	0	1	39	1.09
32857011--32857064	19	2.8	19	72	11	56	64	5	0	29	1.16
32857046--32857097	26	1.9	26	84	7	68	55	3	1	38	1.29
32857078--32857133	18	3.1	18	79	7	60	66	1	0	32	1.03
32857416--32857457	21	2.0	22	95	4	77	2	19	2	76	1.01
32863955--32863979	13	1.9	13	100	0	50	56	8	8	28	1.57
32864921--32864997	14	5.0	15	71	20	52	42	14	9	33	1.77
32864937--32864976	20	2.0	20	90	0	62	50	12	10	27	1.72
32864925--32864991	34	1.9	35	90	3	109	46	13	8	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32865278--32865312	2	17.5	2	100	0	70	0	48	0	51	1.00
32870318--32870410	31	3.0	31	82	1	107	39	15	16	29	1.88
32870533--32870628	50	1.9	50	91	0	156	36	18	9	35	1.83
32871584--32871824	128	1.9	127	85	2	331	29	14	14	41	1.86
32871504--32872192	136	5.2	132	77	9	586	30	14	13	41	1.84
32871504--32872193	137	5.2	134	76	10	598	30	14	13	41	1.84
32883547--32883594	11	4.3	11	86	2	60	8	16	0	75	1.04
32890224--32890446	51	4.4	51	79	5	211	31	27	15	25	1.95
32890259--32890446	51	3.7	49	85	3	223	31	26	15	25	1.96
32893541--32893594	25	2.2	25	86	0	72	37	18	25	18	1.94
32893556--32893636	25	3.2	25	76	0	81	37	18	28	16	1.92
32893924--32893968	22	2.0	22	95	0	81	37	13	15	33	1.86
32896568--32896599	12	2.7	12	90	0	55	43	9	0	46	1.35
32904568--32904594	14	1.9	14	100	0	54	33	7	29	29	1.85
32906329--32906419	44	2.1	44	93	0	155	50	10	12	26	1.72
32908979--32909019	18	2.3	18	88	12	59	65	7	14	12	1.45
32911291--32911339	25	2.0	25	100	0	98	28	10	28	32	1.90
32916193--32916250	25	2.3	25	87	0	80	32	22	27	17	1.96
32916204--32916257	25	2.2	25	86	0	72	38	20	27	12	1.89
32917838--32917906	35	2.0	35	94	0	120	40	11	8	39	1.72
32920444--32920505	30	2.1	28	82	14	72	58	3	9	29	1.46
32922217--32922316	49	2.0	49	100	0	200	28	32	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32922962--32922986	10	2.5	10	100	0	50	16	8	0	76	1.02
32932349--32932445	21	4.7	20	70	17	72	53	2	2	42	1.24
32945006--32945032	3	9.0	3	100	0	54	66	0	33	0	0.92
32946109--32946188	40	2.0	40	83	9	101	36	3	1	58	1.24
32949777--32949822	24	1.9	24	86	0	65	54	0	8	36	1.32
32951504--32951535	14	2.3	14	100	0	64	6	15	46	31	1.71
32956624--32956655	14	2.3	14	100	0	64	6	15	46	31	1.71
32961744--32961775	14	2.3	14	100	0	64	6	15	46	31	1.71
32967074--32967375	97	3.1	92	81	7	318	35	18	11	34	1.87
32974764--32974927	43	3.9	43	78	7	174	28	27	16	27	1.97
32976254--32976295	18	2.4	18	84	11	52	2	23	0	73	0.94
32976952--32977076	64	2.0	64	93	1	216	32	24	24	18	1.97
32980433--32980498	32	2.0	34	85	5	91	24	33	24	18	1.97
32987240--32987294	17	3.1	17	78	16	58	63	3	1	30	1.22
32987300--32987352	18	3.0	17	80	5	61	50	3	1	43	1.30
32987653--32987766	55	2.1	55	85	3	149	25	27	29	17	1.97
32989992--32990017	2	13.0	2	100	0	52	50	0	0	50	1.00
32993982--32994214	25	9.4	25	74	5	134	36	19	26	18	1.94
32994042--32994201	50	3.2	50	77	3	160	38	17	25	18	1.93
32994042--32994214	75	2.3	75	77	7	181	36	17	26	19	1.94
32996525--32996589	31	2.1	31	85	0	85	38	15	6	40	1.72
32997977--32998034	27	2.1	27	96	0	107	27	31	27	13	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32998133--32998171	11	3.6	11	93	6	71	74	0	25	0	0.82
32998298--32998326	3	9.7	3	100	0	58	0	0	31	68	0.89
32999190--32999227	18	2.1	18	95	0	67	34	7	47	10	1.67
33003094--33003119	5	5.2	5	100	0	52	38	19	0	42	1.51
33005406--33005464	29	2.1	28	87	3	82	33	35	10	20	1.86
33011143--33011185	18	2.4	18	88	0	59	30	4	30	34	1.78
33011342--33011375	16	2.1	16	94	0	59	35	14	5	44	1.70
33011576--33011636	19	3.1	19	81	9	70	47	1	0	50	1.10
33016005--33016043	10	4.2	9	84	15	53	35	0	0	64	0.94
33020642--33021031	125	3.0	126	86	4	514	28	12	23	36	1.91
33024770--33024798	2	14.5	2	100	0	58	0	0	48	51	1.00
33034026--33034054	10	2.7	11	89	10	51	65	0	0	34	0.93
33039846--33039923	31	2.5	31	85	6	106	23	14	30	32	1.94
33040684--33040734	26	2.0	26	84	7	68	19	15	39	25	1.91
33041914--33042232	164	1.9	165	85	3	437	27	11	20	39	1.88
33067489--33067530	18	2.3	19	80	12	52	61	2	7	28	1.35
33073455--33073534	30	2.7	30	74	14	76	41	13	10	35	1.78
33077012--33077060	22	2.2	24	85	10	68	42	20	4	32	1.71
33081148--33081219	24	3.0	24	70	13	76	37	8	4	50	1.52
33083011--33083066	24	2.3	24	81	9	60	42	10	5	41	1.62
33111105--33111431	164	2.0	163	81	8	380	20	12	17	49	1.79
33118487--33118536	25	2.0	25	100	0	100	12	24	32	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33126008--33126061	25	2.2	25	86	6	74	44	0	12	42	1.43
33130046--33130107	30	2.1	30	84	6	81	33	6	19	40	1.77
33130697--33130730	14	2.2	16	90	10	54	47	0	2	50	1.16
33132783--33132813	3	10.3	3	100	0	62	32	0	0	67	0.91
33133322--33133355	13	2.8	12	82	8	50	20	2	0	76	0.92
33133322--33133355	6	5.5	6	86	6	50	20	2	0	76	0.92
33141055--33141084	15	2.0	15	93	0	51	40	6	10	43	1.64
33144328--33144378	23	2.2	23	86	6	68	49	5	1	43	1.38
33144774--33144812	19	2.1	19	85	0	51	38	12	5	43	1.65
33148671--33148786	62	1.9	62	84	5	157	39	5	4	50	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172