genome.fa.s22.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  61  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16842476--16842551	27	2.7	28	83	6	100	25	26	13	35	1.92
16842665--16842731	27	2.4	27	85	2	80	31	19	13	35	1.90
16844343--16844494	13	11.5	13	75	10	96	39	2	16	41	1.62
16844343--16844459	53	2.2	52	80	6	128	39	2	17	41	1.63
16844395--16844479	40	2.1	40	82	4	100	40	2	14	43	1.58
16844514--16844551	13	2.9	13	85	11	51	44	5	21	28	1.73
16849931--16849996	26	2.5	26	87	0	96	22	24	24	28	1.99
16853655--16853705	23	2.2	23	100	0	102	41	15	17	25	1.89
16857798--16857865	18	3.6	19	74	21	70	45	17	23	13	1.84
16869744--16869999	126	2.0	127	95	0	460	32	19	18	29	1.96
16892313--16892452	68	2.1	68	94	1	246	25	13	5	55	1.58
16892806--16892863	28	2.1	28	100	0	116	36	17	6	39	1.76
16896081--16896111	16	1.9	16	93	0	53	54	3	0	41	1.16
16897351--16897408	11	5.2	11	85	2	62	20	32	3	43	1.69
16897351--16897426	22	3.4	22	78	5	64	25	31	2	40	1.69
16897386--16897485	51	2.0	51	82	4	121	29	27	2	42	1.67
16900652--16901090	126	3.5	124	86	4	533	29	22	17	30	1.96
16900652--16901090	127	3.5	125	85	3	542	29	22	17	30	1.96
16901881--16901923	21	2.0	21	86	0	59	39	0	13	46	1.44
16905755--16905790	6	6.0	6	93	0	54	55	0	27	16	1.42
16905756--16905794	18	2.2	18	95	0	69	61	0	23	15	1.33
16905756--16905794	12	3.2	12	88	0	60	61	0	23	15	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16906657--16906734	40	2.0	39	90	5	122	43	11	8	35	1.72
16912407--16912556	41	3.7	41	84	3	203	23	28	20	27	1.99
16912405--16912581	82	2.2	83	79	9	202	24	27	19	27	1.99
16914604--16914628	13	1.9	13	100	0	50	68	24	0	8	1.16
16922159--16922197	19	2.0	20	85	14	55	5	12	17	64	1.46
16929059--16929130	36	2.0	36	94	0	126	31	15	16	36	1.90
16931812--16931918	41	2.6	41	94	2	180	19	30	20	28	1.97
16931900--16931944	16	2.8	16	93	0	72	15	28	26	28	1.96
16931916--16932014	41	2.4	41	96	0	180	19	29	23	28	1.98
16931859--16931975	57	2.1	57	98	0	225	17	29	23	28	1.97
16931818--16932014	98	2.0	98	95	2	351	19	29	21	28	1.98
16931916--16932040	41	3.0	41	87	2	117	22	28	22	26	1.99
16933709--16933767	28	2.0	31	83	9	79	50	5	0	44	1.24
16942222--16942503	73	3.9	71	81	5	291	40	13	20	25	1.89
16942221--16942494	109	2.5	107	83	2	343	40	14	20	25	1.89
16942225--16942503	35	7.8	35	77	9	267	40	13	20	25	1.89
16944691--16944761	34	2.3	31	86	13	101	56	4	2	36	1.34
16944700--16944768	34	2.0	34	100	0	138	53	5	2	37	1.40
16944957--16945214	139	1.9	140	85	4	360	31	22	19	27	1.98
16946410--16946513	27	3.9	27	73	5	102	29	33	15	21	1.94
16951659--16951723	27	2.5	26	89	2	94	41	3	4	50	1.38
16954511--16954581	37	1.9	36	83	8	90	36	33	15	14	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16957080--16957104	8	3.1	8	100	0	50	76	0	0	24	0.80
16957500--16957554	28	2.0	27	85	3	74	45	12	9	32	1.74
16957578--16957639	3	20.7	3	100	0	124	67	0	0	32	0.91
16969112--16969147	17	2.2	17	90	5	56	16	5	11	66	1.40
16976854--16977038	101	1.8	102	89	3	293	23	17	27	31	1.97
16976854--16977038	51	3.7	50	80	6	178	23	17	27	31	1.97
16976960--16977040	26	3.2	26	66	22	71	22	14	28	34	1.94
16977045--16977134	46	2.0	44	82	8	110	25	17	24	32	1.97
16986631--16986664	17	2.0	17	88	11	52	35	5	5	52	1.50
16989118--16989291	91	1.9	91	83	0	222	25	21	16	37	1.93
16991822--16991876	19	2.9	19	86	7	69	50	5	1	41	1.36
16991881--16991948	30	2.3	28	85	7	91	61	2	1	33	1.20
16991878--16991943	9	6.9	9	72	13	51	59	3	1	36	1.22
16994464--16994510	24	2.0	24	83	8	60	63	0	36	0	0.94
16999188--16999253	29	2.2	30	86	2	89	42	15	10	31	1.81
17001254--17001670	126	3.3	126	94	1	739	30	19	21	28	1.97
17002773--17002797	7	3.6	7	100	0	50	56	16	0	28	1.41
17003919--17003975	29	2.0	29	92	0	96	54	3	1	40	1.28
17003972--17004038	11	6.2	10	88	11	89	43	0	29	26	1.55
17005001--17005068	21	3.3	21	68	13	52	41	0	0	58	0.98
17013085--17013308	69	3.2	69	82	0	268	35	22	20	20	1.96
17016018--17016241	40	5.7	40	86	6	296	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17016018--17016241	78	2.8	80	84	8	296	24	22	27	25	2.00
17024024--17024244	40	5.6	40	86	5	297	24	22	28	24	2.00
17029266--17029317	23	2.3	22	83	6	59	36	9	3	50	1.54
17029304--17029378	36	2.1	36	85	2	98	38	4	0	57	1.18
17029349--17029480	42	3.1	43	76	14	121	39	7	1	51	1.40
17036073--17036109	9	4.2	9	86	6	58	78	0	18	2	0.87
17036073--17036109	13	2.8	13	84	15	58	78	0	18	2	0.87
17041551--17041711	33	4.7	33	72	18	109	30	26	21	21	1.99
17041692--17041795	42	2.5	42	90	0	172	34	28	13	23	1.92
17041590--17041857	144	1.9	145	91	0	448	32	27	17	21	1.96
17041776--17041857	27	2.8	27	87	10	101	31	30	21	15	1.95
17041875--17042075	51	4.0	51	76	10	214	29	29	16	23	1.97
17041883--17042065	101	1.8	102	89	3	289	30	28	16	24	1.97
17054624--17054669	23	2.0	23	95	0	83	43	15	4	36	1.66
17057465--17057546	26	3.3	26	83	5	98	14	20	25	39	1.91
17060668--17060775	46	2.4	46	85	3	139	20	23	11	45	1.83
17062058--17062122	25	2.7	24	70	2	58	27	20	18	33	1.96
17063795--17063834	21	1.9	21	100	0	80	35	12	22	30	1.91
17064133--17064286	76	2.0	76	98	0	299	28	17	14	39	1.89
17066476--17066508	15	2.1	16	88	5	50	30	15	30	24	1.95
17070768--17070801	13	2.6	13	85	0	50	52	5	23	17	1.66
17078153--17078317	43	3.8	44	88	3	228	30	26	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17083056--17083154	47	2.1	48	94	1	173	45	0	7	47	1.30
17083140--17083192	25	2.1	26	82	3	63	18	3	5	71	1.21
17083139--17083192	19	2.8	18	78	10	54	20	3	5	70	1.23
17083511--17083564	21	2.5	21	82	11	65	33	42	0	24	1.55
17083702--17083741	20	2.0	21	95	5	73	50	30	0	20	1.49
17083779--17083870	22	4.3	21	71	13	62	45	30	2	21	1.64
17083701--17083826	15	8.9	14	69	11	60	44	33	0	21	1.58
17084052--17084130	41	1.9	41	92	0	131	30	25	21	22	1.99
17084062--17084658	114	5.2	114	87	2	826	27	25	21	24	1.99
17084559--17084701	72	2.0	73	84	6	193	24	25	23	26	2.00
17084556--17084729	72	2.4	72	80	6	174	24	24	24	26	2.00
17086505--17086557	21	2.5	21	81	0	61	33	33	7	24	1.84
17089956--17089986	5	6.2	5	100	0	62	38	19	19	22	1.93
17090352--17090410	17	3.3	17	73	19	57	57	0	5	37	1.21
17090490--17090528	19	2.0	20	85	9	55	51	0	28	20	1.48
17090625--17090684	30	2.0	30	86	3	84	43	0	36	20	1.52
17092969--17093150	100	1.8	101	89	1	285	21	30	20	26	1.98
17092969--17093156	50	3.7	50	85	6	254	22	29	21	26	1.99
17093261--17093287	13	2.1	13	100	0	54	62	7	0	29	1.22
17095109--17095817	235	3.0	235	92	0	1161	28	16	18	36	1.92
17105699--17105889	41	4.6	41	94	0	319	28	18	27	25	1.98
17107676--17107966	50	5.7	50	88	2	375	25	20	30	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17108227--17108262	16	2.2	16	90	0	54	52	2	27	16	1.57
17114322--17114354	17	1.9	17	100	0	66	18	27	18	36	1.94
17116650--17116744	42	2.3	42	90	1	147	29	3	16	50	1.61
17118333--17118382	15	3.4	15	94	2	84	24	12	20	44	1.85
17121331--17121371	19	2.2	19	100	0	82	39	4	14	41	1.67
17121393--17121482	42	2.1	42	81	0	108	30	5	13	51	1.64
17122836--17122865	13	2.3	13	94	0	51	46	26	16	10	1.78
17131361--17131458	50	2.0	49	84	6	126	32	14	22	30	1.93
17135972--17135998	14	1.9	14	100	0	54	14	25	7	51	1.68
17137311--17137340	12	2.4	12	94	5	51	16	6	3	73	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172