genome.fa.s18.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  10  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3135860--3135892	14	2.3	15	89	5	50	15	6	3	75	1.11
3137846--3137884	11	3.6	10	86	13	51	12	0	5	82	0.83
3137846--3137891	22	2.1	22	88	8	67	15	0	4	80	0.86
3139501--3139535	16	2.2	16	90	10	54	40	2	0	57	1.14
3139647--3139702	27	2.0	27	86	3	76	57	1	0	41	1.09
3143324--3143354	12	2.6	12	94	0	53	45	6	0	48	1.28
3144655--3144696	19	2.2	19	100	0	84	26	0	4	69	1.08
3147617--3147659	22	2.0	22	85	0	59	60	6	9	23	1.51
3151113--3151182	33	2.1	33	100	0	140	40	20	8	31	1.82
3154087--3154139	16	3.3	16	86	0	79	39	3	32	24	1.73
3154121--3154213	44	2.1	46	91	4	154	29	4	30	36	1.77
3154121--3154226	39	2.5	44	82	11	132	30	3	31	34	1.75
3154317--3154437	56	2.1	57	79	8	131	48	4	0	46	1.23
3156018--3156158	68	2.1	68	94	2	248	37	17	11	34	1.85
3165616--3165712	36	2.7	35	81	10	115	51	10	9	28	1.67
3165665--3165811	55	2.5	58	78	9	174	51	11	9	27	1.69
3165835--3165869	18	1.9	18	100	0	70	34	11	11	42	1.77
3170231--3170256	5	5.2	5	100	0	52	80	0	19	0	0.71
3174059--3174098	20	2.0	20	95	0	71	30	17	0	52	1.45
3175411--3175444	16	2.1	16	88	0	50	50	14	17	17	1.79
3178244--3178284	21	2.0	21	90	0	64	29	21	29	19	1.98
3180190--3180223	16	2.1	16	88	0	50	50	14	17	17	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3190330--3190354	9	2.8	9	100	0	50	80	0	0	20	0.72
3196697--3196739	22	1.9	23	85	4	61	44	0	0	55	0.99
3197503--3197544	20	2.1	20	86	0	57	52	2	0	45	1.13
3209201--3209237	11	3.2	12	81	11	51	70	0	0	29	0.88
3209201--3209243	22	2.0	21	86	9	59	65	0	0	34	0.93
3209201--3209240	10	3.6	11	86	6	55	67	0	0	32	0.91
3214583--3214634	24	2.2	24	82	0	59	51	13	5	28	1.64
3214678--3214837	54	3.0	54	100	0	320	31	29	12	26	1.93
3216537--3217094	278	2.0	278	100	0	1116	34	21	11	32	1.90
3217137--3217250	50	2.3	51	90	1	185	27	24	14	33	1.95
3232686--3232749	26	2.5	27	80	17	82	51	0	1	46	1.10
3232691--3232724	16	2.2	16	90	10	54	55	0	0	44	0.99
3232690--3232749	10	5.9	10	75	14	52	51	0	1	46	1.10
3241568--3241605	8	4.6	8	87	6	58	55	0	0	44	0.99
3243806--3243831	10	2.6	10	100	0	52	0	11	0	88	0.52
3244779--3244838	28	2.1	28	81	6	68	35	0	3	61	1.12
3248004--3248028	4	6.2	4	100	0	50	52	0	0	48	1.00
3249773--3249805	3	11.0	3	100	0	66	66	0	0	33	0.92
3259617--3259657	21	2.0	21	90	0	64	19	29	21	29	1.98
3264398--3264438	21	2.0	21	90	0	64	19	29	21	29	1.98
3269889--3269934	20	2.3	21	74	11	51	67	0	2	30	1.03
3270132--3270207	38	2.0	38	100	0	152	47	21	10	21	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3274897--3274940	17	2.5	18	82	10	56	36	0	0	63	0.95
3288001--3288033	14	2.4	14	90	10	50	66	6	3	24	1.28
3297450--3297495	24	1.9	24	86	8	67	32	26	28	13	1.93
3300082--3300113	15	2.0	17	88	11	50	31	3	3	62	1.26
3307569--3307628	31	2.0	30	83	3	75	51	3	11	33	1.55
3312612--3312698	42	2.1	42	100	0	174	36	20	17	25	1.94
3338403--3338457	3	18.3	3	88	0	65	0	25	32	41	1.56
3341115--3341141	13	2.1	13	100	0	54	59	14	18	7	1.58
3345287--3345320	17	2.0	17	94	0	59	44	50	0	5	1.26
3348319--3348352	17	2.0	17	94	0	59	44	50	0	5	1.26
3350889--3350950	30	2.1	30	93	0	106	58	12	3	25	1.50
3351803--3351849	16	2.8	17	81	15	53	36	0	10	53	1.36
3352991--3353027	18	2.0	19	89	5	58	43	0	0	56	0.99
3352991--3353063	19	3.9	18	77	13	67	45	0	0	54	0.99
3353010--3353072	20	3.2	20	81	0	63	46	0	1	52	1.10
3353005--3353063	9	6.4	9	79	11	50	44	0	0	55	0.99
3352997--3353067	29	2.5	29	76	15	76	42	0	0	57	0.98
3354376--3354480	50	2.1	49	80	10	113	45	4	15	34	1.67
3355098--3355148	21	2.4	22	80	6	61	11	9	15	62	1.53
3356217--3356775	159	3.5	159	94	2	935	40	10	25	23	1.87
3361696--3361771	15	5.0	15	71	16	50	34	1	5	59	1.28
3366851--3367402	51	10.9	51	77	5	519	30	14	25	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3366850--3367402	102	5.4	102	92	1	844	30	14	25	29	1.95
3369399--3369443	17	2.5	18	82	10	56	68	0	0	31	0.89
3372430--3372501	35	2.1	35	100	0	144	30	11	18	40	1.85
3380465--3380611	43	3.4	43	90	0	240	33	29	19	17	1.95
3387127--3387247	2	60.5	2	100	0	242	50	0	49	0	1.00
3407855--3407909	27	2.0	27	92	0	92	41	14	16	27	1.87
3409177--3409252	35	2.2	35	85	4	100	22	19	10	47	1.80
3419697--3419729	10	3.3	10	100	0	66	51	39	0	9	1.34
3425709--3425756	23	2.1	23	100	0	96	52	12	16	18	1.75
3428367--3428417	23	2.2	23	82	0	57	49	3	0	47	1.20
3432068--3432105	20	2.0	20	84	5	51	68	5	7	18	1.34
3437627--3437718	9	10.2	9	98	0	157	21	10	29	38	1.88
3437879--3437903	12	2.1	12	100	0	50	16	24	36	24	1.94
3438887--3438913	3	9.0	3	100	0	54	33	33	0	33	1.58
3440404--3440537	63	2.1	65	92	2	227	29	4	8	57	1.48
3443175--3443246	30	2.4	30	79	9	83	33	12	8	45	1.72
3450765--3451125	185	2.0	185	89	0	551	28	19	12	39	1.88
3454376--3454461	43	2.0	43	100	0	172	27	25	13	32	1.94
3476601--3476652	19	2.7	20	79	11	72	61	3	11	23	1.46
3476864--3476903	21	2.0	21	85	5	55	22	5	5	67	1.30
3503025--3503089	13	5.0	13	73	0	58	32	1	26	40	1.65
3503669--3503825	79	2.0	79	94	0	278	37	22	13	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3507953--3507981	12	2.3	13	94	5	51	72	6	0	20	1.07
3512082--3512130	25	2.0	25	95	0	89	32	14	10	42	1.79
3516091--3516137	21	2.2	22	92	3	78	21	19	38	21	1.94
3517421--3517501	25	3.3	23	69	20	58	49	1	4	44	1.32
3533457--3533497	3	13.7	3	94	0	73	34	31	2	31	1.71
3534657--3534690	17	2.0	17	88	11	52	67	2	0	29	1.05
3534680--3534803	27	4.6	27	92	5	191	40	10	0	49	1.37
3534845--3534929	27	3.2	26	80	11	84	31	23	23	21	1.98
3535004--3535073	19	3.7	19	82	3	97	37	10	0	52	1.35
3535009--3535079	37	1.9	37	100	0	142	39	11	0	49	1.39
3535446--3535542	28	3.5	28	97	1	178	47	1	13	38	1.50
3546312--3546357	23	2.0	23	100	0	92	13	21	17	47	1.81
3550625--3550669	24	2.0	24	86	8	67	75	4	8	11	1.17
3564040--3564068	10	2.9	10	100	0	58	37	10	0	51	1.36
3564699--3564729	12	2.6	12	100	0	62	64	0	6	29	1.18
3567043--3567067	13	1.9	13	100	0	50	32	0	0	68	0.90
3582711--3582866	46	3.5	46	93	2	255	33	14	23	27	1.94
3583419--3583491	36	2.0	36	97	0	137	17	19	34	28	1.95
3583537--3583599	33	1.9	33	81	12	76	42	3	1	52	1.27
3583768--3583821	16	3.4	16	84	5	65	33	25	1	38	1.67
3583774--3583822	16	3.0	17	85	5	66	30	28	4	36	1.76
3585792--3585818	4	6.8	4	100	0	54	74	0	0	25	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3586104--3586149	14	3.6	13	77	22	53	63	0	0	36	0.95
3586104--3586165	24	2.7	23	87	2	88	59	0	1	38	1.07
3588210--3588259	19	2.5	21	78	12	61	62	0	4	34	1.14
3589112--3589160	18	2.7	18	74	20	57	20	6	0	73	1.04
3591617--3591681	33	2.0	33	93	0	112	38	18	6	36	1.76
3603634--3603884	124	2.0	124	100	0	502	29	19	28	22	1.98
3610097--3610136	13	3.0	14	79	20	50	35	15	0	50	1.44
3610536--3610589	21	2.6	22	77	11	60	64	1	1	31	1.14
3613976--3614011	3	12.0	3	100	0	72	0	33	0	66	0.92
3619547--3619724	87	2.0	87	97	0	338	16	35	16	31	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153