genome.fa.s18.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  117  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36616155--36616212	18	3.4	18	63	18	52	34	8	15	41	1.78
36631600--36631812	46	4.6	46	78	9	193	30	19	26	24	1.98
36639455--36639489	16	2.1	18	89	10	56	37	14	2	45	1.59
36645325--36645473	76	2.0	76	91	0	244	32	14	17	34	1.90
36646248--36646291	19	2.5	17	81	7	52	61	0	11	27	1.30
36646347--36646423	38	2.0	38	100	0	154	45	23	5	25	1.73
36659451--36659499	25	1.9	26	84	12	66	46	2	8	42	1.45
36664863--36664911	24	2.0	25	84	4	64	63	14	2	20	1.40
36667780--36667813	17	2.0	17	100	0	68	64	0	5	29	1.17
36670419--36670447	14	2.1	14	100	0	58	27	0	44	27	1.54
36679687--36679805	57	2.1	56	84	10	152	25	22	6	45	1.77
36682250--36682358	43	2.5	43	85	5	141	24	14	24	35	1.93
36700719--36700811	18	5.2	18	90	0	150	27	24	16	31	1.96
36708702--36708749	4	12.8	4	82	8	57	22	2	2	72	1.05
36708808--36708907	3	34.7	3	68	15	59	31	6	4	59	1.40
36708808--36708869	26	2.4	26	84	7	74	30	4	4	59	1.39
36710738--36710774	3	12.3	3	94	0	65	64	0	2	32	1.07
36711059--36711091	3	11.0	3	100	0	66	66	0	0	33	0.92
36725612--36725690	39	2.0	39	92	0	131	7	35	17	39	1.78
36725969--36726036	16	4.2	16	92	0	118	27	0	36	35	1.58
36726264--36726404	17	8.6	17	65	21	61	52	0	1	45	1.14
36726302--36726350	24	2.1	22	85	14	64	55	0	2	42	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36726321--36726376	15	4.0	15	73	17	57	55	0	0	44	0.99
36726281--36726468	41	4.7	39	67	23	115	52	3	2	42	1.29
36726331--36726393	26	2.5	25	82	10	83	58	1	0	39	1.07
36727966--36727995	13	2.3	13	94	0	51	30	13	6	50	1.67
36731609--36731645	18	2.2	18	85	9	51	27	0	8	64	1.21
36731626--36732191	107	5.3	107	87	6	692	32	1	16	49	1.54
36731626--36732199	220	2.7	211	82	10	693	32	1	16	49	1.55
36732221--36732288	16	4.2	16	92	0	118	27	0	36	35	1.58
36732516--36732725	17	12.6	17	64	22	63	53	2	0	43	1.20
36732553--36732601	24	2.1	22	85	14	64	55	0	2	42	1.11
36732532--36732668	41	3.4	39	75	18	127	54	2	1	42	1.21
36732582--36732644	26	2.5	25	82	10	83	58	1	0	39	1.07
36735048--36735094	21	2.2	21	92	0	76	27	25	25	21	1.99
36736542--36736654	42	2.9	38	80	10	122	41	28	7	22	1.81
36736999--36737139	38	4.0	38	72	17	131	59	9	26	4	1.47
36737006--36737155	66	2.3	66	91	2	248	62	8	26	3	1.39
36737118--36737162	23	2.0	23	86	0	63	57	8	31	2	1.41
36737678--36737709	15	2.1	16	94	5	57	37	0	6	56	1.25
36737689--36737738	23	2.2	23	88	0	73	34	0	2	64	1.05
36737687--36737740	15	4.2	13	75	18	51	31	0	1	66	1.02
36737699--36737744	23	2.0	23	100	0	92	30	0	0	69	0.89
36737703--36737747	11	3.9	12	80	8	58	28	0	0	71	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36737707--36737762	27	2.1	26	87	12	78	30	0	1	67	1.01
36740069--36740130	30	2.1	30	100	0	124	32	6	19	41	1.77
36745157--36745201	23	2.0	23	90	0	72	31	2	0	66	1.04
36745253--36745328	30	2.6	29	78	12	84	28	1	5	64	1.23
36745258--36745339	28	2.9	28	78	7	83	30	1	3	64	1.18
36745750--36745844	36	2.6	37	72	12	88	51	3	0	45	1.17
36745777--36745838	30	2.1	31	81	6	74	51	4	0	43	1.23
36745881--36745921	18	2.2	19	91	4	66	65	0	7	26	1.18
36748814--36748839	13	2.0	13	100	0	52	15	38	0	46	1.46
36749031--36749082	25	2.1	25	100	0	104	34	11	17	36	1.86
36780265--36780322	29	2.0	29	93	3	100	41	10	17	31	1.83
36781500--36781525	5	5.2	5	100	0	52	19	0	0	80	0.71
36785040--36785080	21	2.0	21	90	0	64	29	21	29	19	1.98
36790825--36790882	30	1.9	30	85	0	80	37	0	1	60	1.07
36794158--36794321	48	3.4	48	87	0	220	24	13	26	35	1.92
36794496--36794539	22	2.0	22	86	0	61	15	9	11	63	1.51
36797090--36797130	21	2.0	21	85	9	57	43	7	12	36	1.70
36800062--36800111	23	2.2	23	85	7	66	64	2	4	30	1.23
36800075--36800115	21	1.9	22	85	5	57	68	0	2	29	1.03
36802377--36802417	20	2.0	21	86	13	59	56	7	0	36	1.27
36803888--36803952	12	5.5	12	80	10	64	40	0	0	60	0.97
36803888--36803952	23	2.8	24	73	17	66	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36803989--36804044	18	3.3	17	71	16	53	33	0	1	64	1.04
36819359--36819431	35	2.1	35	100	0	146	50	21	10	16	1.75
36819630--36819689	27	2.1	29	82	17	74	53	0	0	46	1.00
36830992--36831027	15	2.4	15	95	0	63	52	5	0	41	1.24
36831512--36831538	2	13.5	2	100	0	54	48	0	0	51	1.00
36831637--36831692	22	2.4	24	79	5	62	41	5	1	51	1.35
36831744--36831785	17	2.4	18	80	11	52	50	0	0	50	1.00
36833104--36833198	48	2.0	48	100	0	190	44	12	5	37	1.65
36833127--36833201	22	3.2	22	67	26	64	38	14	5	41	1.69
36851128--36851214	21	4.0	23	80	10	92	37	25	21	14	1.92
36852106--36852141	15	2.3	17	81	18	51	0	30	0	69	0.89
36872618--36872665	21	2.2	23	82	14	66	64	12	10	12	1.50
36881265--36881323	29	2.0	29	83	0	73	16	40	1	40	1.59
36884417--36884454	18	2.1	18	100	0	76	31	34	13	21	1.91
36887343--36887396	21	2.6	21	97	2	101	53	0	0	46	1.00
36887418--36887701	70	4.1	70	99	0	559	40	3	5	49	1.44
36887475--36887655	35	5.2	35	62	19	108	39	4	5	50	1.46
36887385--36887701	140	2.3	139	92	3	449	42	3	5	49	1.41
36887938--36888055	60	2.0	59	80	6	130	39	6	18	34	1.77
36889923--36890029	53	2.2	52	83	11	136	30	28	14	26	1.95
36889952--36890051	53	1.9	52	85	6	139	32	27	15	26	1.95
36891514--36891538	5	5.0	5	100	0	50	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36893183--36893264	40	2.0	40	92	0	137	51	14	6	28	1.66
36893849--36893886	20	1.9	20	88	0	58	23	13	31	31	1.93
36893942--36893989	16	3.0	16	87	0	69	72	0	0	27	0.84
36894045--36894096	20	2.6	20	88	11	72	61	3	3	30	1.32
36894366--36894407	9	4.7	9	80	11	50	33	0	4	61	1.17
36896894--36897050	81	2.0	80	87	7	234	32	14	7	45	1.72
36898049--36898276	126	1.8	126	91	1	377	39	17	16	26	1.91
36898796--36898837	18	2.3	18	84	8	50	59	11	4	23	1.51
36898858--36899032	3	60.0	3	69	14	82	64	2	2	31	1.19
36898858--36898909	20	2.6	20	82	14	63	71	0	0	28	0.87
36898872--36899032	26	6.1	26	67	16	82	64	2	2	30	1.19
36898921--36899017	17	5.5	18	67	18	62	63	1	3	31	1.16
36898856--36898953	20	4.9	20	70	9	58	64	2	2	31	1.16
36899248--36899297	24	2.1	24	92	0	82	22	4	48	26	1.68
36899280--36899363	17	5.4	17	70	20	67	21	0	46	32	1.52
36899321--36899374	13	3.8	13	80	17	63	18	0	46	35	1.50
36899288--36899374	30	2.9	30	89	0	120	20	0	45	33	1.51
36899661--36900819	133	8.7	133	87	3	1560	26	22	20	30	1.98
36899661--36900819	268	4.3	267	87	3	1668	26	22	20	30	1.98
36899676--36900276	43	13.5	43	65	16	217	27	22	20	29	1.98
36899661--36900819	401	2.9	401	95	0	2059	26	22	20	30	1.98
36900739--36900843	45	2.4	45	84	7	117	21	25	20	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36900825--36901287	87	5.4	87	76	11	377	20	22	22	34	1.96
36901084--36901285	43	4.7	43	79	4	201	19	21	22	36	1.95
36900897--36901287	171	2.3	173	80	8	424	20	20	21	36	1.95
36902521--36902557	19	2.0	18	89	5	56	0	5	10	83	0.79
36903145--36903187	19	2.3	19	88	8	61	4	9	0	86	0.71
36903143--36903187	17	2.6	17	89	3	63	6	8	0	84	0.78
36905518--36905571	8	5.8	10	79	16	55	46	11	20	22	1.82
36905523--36905571	19	2.7	18	79	14	57	46	10	20	22	1.80
36906896--36907123	126	1.8	126	88	1	350	39	16	16	27	1.90
36907644--36907685	18	2.3	18	84	8	50	59	11	4	23	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153