genome.fa.s18.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  150  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46961407--46961450	19	2.4	17	82	14	52	4	18	2	75	1.09
46979191--46979543	47	7.4	47	95	1	589	32	7	29	29	1.86
46981680--46981744	33	1.9	34	87	3	96	43	13	9	33	1.76
46985707--46985741	18	1.9	18	100	0	70	37	11	11	40	1.77
46987085--46987159	33	2.2	34	85	2	107	36	8	12	44	1.71
46990348--46990480	39	3.4	39	95	2	232	52	13	14	19	1.74
46997168--46997197	16	1.9	15	93	6	51	20	3	33	43	1.68
47012705--47012882	27	6.6	27	84	3	205	29	28	15	26	1.96
47012726--47012881	82	1.9	81	88	3	233	29	28	15	26	1.96
47024441--47024708	40	6.7	40	97	0	473	22	27	20	29	1.98
47031963--47032029	29	2.4	28	82	9	84	68	0	17	13	1.21
47031963--47032005	12	3.3	12	79	17	50	69	0	18	11	1.17
47031985--47032022	18	2.2	17	90	4	58	63	0	15	21	1.31
47031990--47032045	17	3.2	17	82	2	58	66	0	17	16	1.26
47060562--47060611	18	2.5	20	87	9	68	74	2	20	4	1.08
47070835--47071584	395	1.9	395	87	2	1096	36	20	19	23	1.95
47077384--47077417	17	2.0	17	88	11	52	29	14	23	32	1.94
47080471--47080548	38	2.1	38	97	0	147	39	6	26	26	1.80
47081374--47081446	30	2.4	30	100	0	146	34	10	15	39	1.82
47087461--47087645	79	2.3	82	83	7	229	24	27	22	25	2.00
47087442--47087645	40	5.1	40	80	8	220	24	27	22	25	2.00
47088873--47088897	11	2.3	11	100	0	50	48	20	16	16	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47091915--47091971	10	5.9	9	78	15	60	24	29	15	29	1.96
47091916--47091971	20	2.8	20	89	2	87	25	30	16	28	1.96
47094426--47094457	15	2.1	16	94	5	57	71	0	21	6	1.07
47094484--47094523	21	1.9	21	84	0	53	52	5	25	17	1.64
47100593--47100627	7	5.0	7	89	0	52	14	0	40	45	1.45
47102269--47102312	20	2.2	20	95	0	79	25	22	15	36	1.94
47106838--47106893	20	2.8	20	84	10	62	21	33	12	32	1.91
47106879--47106922	20	2.2	20	95	0	79	25	22	15	36	1.94
47115521--47116082	281	2.0	281	100	0	1124	40	17	16	25	1.90
47116740--47116814	33	2.2	34	90	2	116	42	12	8	37	1.71
47126946--47127003	30	1.9	30	86	6	82	41	8	20	29	1.82
47127339--47127619	97	2.9	100	79	7	292	28	16	25	29	1.96
47127339--47127624	49	5.8	49	73	9	217	28	16	25	29	1.97
47132568--47132892	162	2.0	162	100	0	650	29	16	25	29	1.96
47135024--47135461	102	4.3	102	87	3	530	27	16	26	29	1.97
47135024--47135561	51	10.7	51	75	9	388	28	16	25	29	1.97
47135329--47135561	99	2.4	99	92	0	385	29	17	24	29	1.97
47137198--47137375	27	6.6	27	83	3	205	26	15	28	29	1.96
47137199--47137354	82	1.9	81	88	3	233	26	15	28	29	1.96
47137195--47137375	82	2.2	81	83	2	229	27	15	27	29	1.96
47147495--47147582	33	2.6	34	81	13	103	38	4	13	43	1.65
47149422--47149463	10	3.7	12	81	18	54	71	0	14	14	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47149496--47149567	33	2.2	33	80	9	85	52	11	25	11	1.69
47159318--47159368	25	2.1	24	82	10	59	49	11	17	21	1.79
47160193--47160283	33	2.7	34	81	8	107	45	12	5	37	1.65
47176202--47176254	23	2.3	23	83	9	63	45	11	13	30	1.78
47179064--47179095	15	2.1	15	94	0	55	6	31	0	62	1.20
47181719--47182042	49	6.4	49	73	12	253	23	23	20	31	1.98
47181701--47182141	50	8.8	50	75	10	285	23	25	21	29	1.99
47189518--47189657	50	2.8	50	85	0	190	21	28	22	27	1.99
47192955--47192982	14	2.0	14	100	0	56	35	21	14	28	1.92
47198240--47198348	45	2.4	45	81	6	123	53	11	5	29	1.60
47199905--47199942	18	2.1	18	90	0	58	5	21	0	73	1.02
47205563--47205657	25	3.8	25	71	13	70	29	18	26	25	1.98
47205822--47205852	15	2.1	15	100	0	62	48	6	0	45	1.28
47214358--47214408	20	2.6	20	84	3	68	5	15	3	74	1.16
47214332--47214399	20	3.5	19	75	21	61	7	17	1	73	1.13
47214358--47214408	19	2.5	21	78	15	63	5	15	3	74	1.16
47225077--47225130	25	2.2	25	80	12	58	38	3	1	55	1.28
47228311--47228425	60	1.9	60	100	0	230	41	13	13	31	1.83
47235123--47235172	21	2.4	21	96	0	91	30	6	38	26	1.80
47239937--47240037	40	2.6	40	82	3	116	37	4	7	49	1.54
47244221--47244299	37	2.1	37	88	4	115	25	30	18	25	1.98
47244418--47244773	47	7.6	47	92	1	570	28	30	8	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47254796--47254829	4	8.0	4	90	9	50	23	0	2	73	0.97
47254779--47254838	22	2.7	22	73	19	61	26	0	6	66	1.16
47260904--47260966	20	3.2	20	90	0	99	22	25	0	52	1.47
47260894--47260936	16	2.8	16	89	3	61	23	32	0	44	1.54
47267982--47268116	65	2.1	65	90	0	216	29	14	25	29	1.95
47268727--47268785	13	4.5	13	82	0	55	38	25	6	28	1.81
47270910--47271008	45	2.2	45	85	3	137	41	17	18	23	1.90
47272536--47272595	24	2.5	23	84	15	77	50	1	0	48	1.11
47281411--47281454	17	2.5	17	92	3	70	25	27	0	47	1.52
47281876--47281974	45	2.2	45	85	3	137	41	17	18	23	1.90
47283502--47283561	24	2.5	23	84	15	77	50	1	0	48	1.11
47284681--47284713	12	3.0	11	91	8	50	9	9	9	72	1.28
47313109--47313159	12	4.3	12	78	9	52	17	25	3	52	1.61
47313362--47313556	50	3.9	50	80	2	196	23	27	22	27	1.99
47316177--47316511	40	8.4	39	87	3	368	30	16	30	22	1.96
47316249--47316432	20	9.2	20	66	10	117	28	18	32	20	1.96
47316208--47316511	80	3.8	80	88	3	425	30	16	30	22	1.96
47316204--47316511	119	2.6	119	88	1	454	30	16	30	22	1.96
47320743--47320783	18	2.2	19	86	4	57	39	0	2	58	1.11
47320739--47320784	19	2.4	20	78	10	60	39	0	2	58	1.10
47324718--47324780	30	2.1	30	93	0	108	30	23	7	38	1.84
47332040--47332072	3	11.0	3	100	0	66	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47336324--47336393	28	2.6	28	82	8	83	24	10	17	48	1.77
47337167--47337199	17	2.0	17	88	5	50	42	3	0	54	1.15
47342536--47342644	33	3.5	32	89	9	156	28	30	22	18	1.97
47342563--47342646	27	2.9	27	87	10	105	27	30	25	16	1.97
47348538--47348581	17	2.6	17	96	0	79	43	2	40	13	1.57
47350586--47350615	14	2.1	15	93	6	53	20	10	26	43	1.83
47360558--47360724	73	2.3	72	83	1	199	28	21	25	25	1.99
47360629--47361072	114	3.9	115	85	2	592	26	22	26	25	2.00
47361440--47361473	14	2.4	14	100	0	68	26	0	38	35	1.57
47361489--47361546	7	7.6	7	75	17	53	17	1	46	32	1.58
47361468--47361547	22	3.5	22	86	6	90	20	1	43	33	1.59
47361436--47361521	14	6.1	14	74	8	57	22	0	43	34	1.53
47361486--47361560	25	3.2	24	88	7	109	16	4	46	32	1.65
47361811--47361850	21	1.9	21	89	0	62	25	0	42	32	1.55
47362522--47362685	88	1.9	89	90	1	267	47	10	12	29	1.74
47362736--47362949	106	2.0	107	88	1	315	50	10	11	27	1.70
47362871--47362924	24	2.3	23	78	15	56	70	3	1	24	1.13
47363247--47363327	40	2.0	40	97	0	153	44	12	25	17	1.84
47364406--47364665	130	2.0	130	94	0	457	32	22	21	23	1.98
47367254--47367337	8	10.5	8	73	14	59	48	16	0	34	1.47
47367254--47367337	17	4.7	17	70	21	64	48	16	0	34	1.47
47367281--47367337	9	6.8	8	80	7	60	49	17	0	33	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47367254--47367337	34	2.3	36	88	8	118	48	16	0	34	1.47
47367281--47367337	17	3.4	17	78	9	71	49	17	0	33	1.47
47367433--47367504	17	4.2	17	72	19	60	44	12	1	41	1.51
47367433--47367482	8	6.0	8	75	25	50	46	12	2	40	1.52
47367444--47367504	25	2.4	25	86	8	79	44	11	1	42	1.50
47367982--47368169	43	4.4	42	84	4	166	30	21	28	19	1.98
47368010--47368235	43	5.3	43	86	0	317	27	19	29	22	1.98
47369380--47369407	14	2.0	14	100	0	56	35	7	0	57	1.26
47383366--47383656	41	7.0	41	76	17	294	33	25	17	23	1.96
47383365--47383656	84	3.5	84	97	0	532	33	25	17	23	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153