genome.fa.s18.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  84  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26739655--26739698	22	2.0	21	86	4	61	52	27	2	18	1.57
26739950--26740348	114	3.5	113	89	1	564	25	20	17	36	1.94
26740544--26740637	40	2.4	39	82	8	102	20	18	24	37	1.94
26743634--26743709	35	2.2	34	84	11	93	59	0	5	35	1.20
26744783--26744824	20	2.1	20	90	0	66	7	11	2	78	1.04
26752286--26752310	12	2.1	12	100	0	50	44	0	8	48	1.32
26754757--26754932	41	4.3	41	94	0	307	23	28	19	28	1.98
26761726--26761811	45	1.9	45	97	0	163	38	24	6	30	1.82
26762103--26762319	41	5.3	41	93	0	371	23	28	19	28	1.98
26767175--26767366	105	1.8	105	82	2	251	32	17	15	34	1.91
26769118--26769256	27	5.2	26	78	11	120	20	17	20	41	1.90
26769118--26769256	54	2.6	53	80	8	165	20	17	20	41	1.90
26770494--26771087	295	2.0	291	87	2	841	28	16	21	34	1.95
26770988--26771215	122	1.9	122	85	3	316	26	13	27	32	1.94
26774736--26774788	20	2.7	20	90	0	79	22	32	5	39	1.78
26785008--26785256	125	2.0	121	92	3	417	38	12	13	34	1.83
26793202--26793249	14	3.4	14	76	23	55	79	4	4	12	1.02
26793677--26793715	13	2.9	14	80	7	53	74	0	15	10	1.07
26794920--26795282	87	4.2	87	93	1	606	27	21	25	24	1.99
26795243--26795323	41	2.0	41	100	0	162	25	17	29	27	1.97
26795284--26795442	87	1.8	87	95	0	291	28	22	25	24	1.99
26795156--26795410	128	2.0	128	94	0	447	27	21	26	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26803770--26804441	131	5.2	131	87	0	909	28	22	24	23	1.99
26804486--26804885	44	8.7	44	68	16	184	31	19	22	27	1.98
26804519--26805120	142	4.3	142	90	1	919	32	18	20	27	1.97
26805136--26805284	50	3.0	50	75	5	158	34	24	18	23	1.96
26805136--26805351	100	2.2	101	84	3	285	34	22	18	25	1.96
26805138--26805356	50	4.4	49	72	5	143	34	22	17	25	1.96
26806996--26807234	114	2.1	115	96	1	435	32	12	6	48	1.68
26808413--26808440	12	2.3	12	100	0	56	53	14	0	32	1.41
26808928--26809306	22	16.5	22	69	11	224	43	22	11	22	1.85
26808905--26809306	69	5.8	69	80	6	454	43	21	11	23	1.85
26808949--26809167	117	1.9	117	93	1	377	42	23	12	22	1.87
26809025--26809236	47	4.6	47	79	6	243	42	22	10	24	1.85
26809128--26809189	11	5.6	11	74	0	52	43	27	4	24	1.74
26808905--26809258	91	3.8	91	76	7	302	43	22	11	23	1.85
26809977--26810106	40	3.2	39	77	9	125	35	26	12	25	1.91
26813920--26814176	122	2.1	122	81	4	304	26	15	26	31	1.96
26819814--26819865	16	3.2	16	91	0	77	30	0	34	34	1.58
26820102--26820136	18	2.0	17	88	5	52	54	0	0	45	0.99
26820060--26820132	27	2.7	27	76	8	76	52	2	0	45	1.15
26820249--26820283	18	2.0	17	88	5	52	54	0	0	45	0.99
26820021--26820295	147	1.9	149	96	1	509	46	3	2	47	1.33
26820324--26820370	17	2.9	16	78	18	53	46	2	6	44	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26820343--26820376	17	2.0	17	94	0	59	50	0	5	44	1.26
26820409--26820603	93	2.1	92	88	4	286	47	4	4	44	1.41
26825551--26825590	19	2.2	19	86	4	55	67	5	0	27	1.11
26825591--26825624	17	2.0	17	100	0	68	64	0	0	35	0.94
26825593--26825633	17	2.4	17	91	4	64	70	0	0	29	0.87
26826709--26826742	17	1.9	18	88	5	52	64	0	2	32	1.08
26826827--26826864	18	2.1	19	85	5	51	36	2	2	57	1.26
26827898--26827934	9	4.1	9	92	0	65	45	13	10	29	1.77
26828961--26828996	5	7.2	5	100	0	72	19	19	19	41	1.90
26829830--26829885	24	2.3	24	100	0	112	46	8	17	26	1.78
26831736--26831847	28	3.9	28	76	15	120	20	13	11	54	1.70
26831738--26831851	59	1.9	60	90	1	185	21	13	11	54	1.69
26832855--26832899	11	4.1	11	79	0	54	15	2	13	68	1.30
26832852--26832897	22	2.1	22	91	0	74	13	2	15	69	1.28
26835479--26835542	30	2.1	30	97	0	119	21	3	48	26	1.65
26836870--26836920	27	1.9	26	88	4	75	21	15	11	50	1.76
26836869--26836925	27	2.2	26	81	6	71	22	14	10	52	1.71
26842284--26842460	91	2.0	90	85	1	237	35	22	11	29	1.90
26843129--26843172	22	2.0	23	81	4	54	40	11	9	38	1.73
26843664--26843694	9	3.4	9	90	0	53	25	12	22	38	1.90
26843989--26844048	30	2.0	31	83	3	77	21	38	0	40	1.54
26844587--26844617	5	6.2	5	100	0	62	19	19	19	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26846974--26847118	52	2.8	52	85	3	193	30	22	24	22	1.99
26846972--26847118	53	2.8	52	84	4	199	30	22	24	22	1.99
26847113--26847229	61	1.9	61	85	3	164	41	18	19	20	1.91
26847174--26847703	114	4.8	112	82	6	553	33	17	21	27	1.96
26847736--26847875	52	2.7	49	86	8	181	17	21	25	35	1.95
26851156--26851190	18	1.9	18	88	0	52	20	8	2	68	1.29
26851207--26851256	3	16.3	3	80	12	57	34	4	0	62	1.14
26851207--26851256	12	4.4	11	87	9	66	34	4	0	62	1.14
26854984--26855591	44	13.6	44	72	11	396	30	17	22	30	1.96
26854891--26855273	181	2.1	181	88	0	561	30	17	20	31	1.96
26855298--26855622	181	1.8	180	93	0	560	31	16	20	32	1.95
26854985--26855586	313	1.9	314	90	0	963	30	17	21	30	1.96
26856939--26857279	50	6.7	50	88	3	495	18	30	23	27	1.98
26857695--26857997	44	6.7	45	76	10	179	33	16	20	29	1.95
26859483--26859517	18	1.9	18	88	0	52	20	8	2	68	1.29
26859534--26859583	3	16.3	3	80	12	57	34	4	0	62	1.14
26859534--26859583	12	4.4	11	87	9	66	34	4	0	62	1.14
26862931--26862995	29	2.3	27	78	19	71	58	1	1	38	1.17
26862855--26863003	49	3.0	46	74	14	122	57	2	3	36	1.30
26865709--26865753	17	2.6	18	89	3	65	60	15	4	20	1.52
26866081--26866127	19	2.7	18	78	21	55	55	4	6	34	1.45
26866081--26866177	35	2.8	34	75	15	101	54	3	5	37	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26866146--26866180	13	2.8	12	87	12	52	62	0	0	37	0.95
26866327--26866361	16	2.2	17	90	10	56	54	2	0	42	1.15
26866332--26866419	26	3.3	26	79	3	95	59	9	3	28	1.44
26866460--26866489	15	1.9	15	93	6	51	70	6	3	20	1.25
26866453--26866498	16	2.9	16	80	9	58	65	6	2	26	1.28
26868089--26868135	18	2.4	18	82	10	58	12	2	27	57	1.47
26868415--26868568	44	3.5	43	76	7	132	26	26	19	27	1.99
26868451--26868581	44	3.0	44	80	0	172	27	25	19	27	1.99
26868510--26868992	139	3.5	138	82	5	532	28	18	20	32	1.97
26874354--26874404	24	2.1	24	85	7	68	43	3	23	29	1.72
26876349--26876393	17	2.6	18	89	3	65	60	15	4	20	1.52
26876719--26876765	19	2.7	18	78	21	55	55	4	6	34	1.45
26876954--26876988	16	2.2	17	90	10	56	54	2	0	42	1.15
26876959--26877046	26	3.3	26	82	3	104	59	7	3	29	1.42
26877088--26877117	15	1.9	15	93	6	51	73	6	0	20	1.05
26877081--26877126	16	2.9	16	83	9	67	67	4	0	28	1.10
26886258--26886328	31	2.2	32	90	2	108	32	11	22	33	1.90
26893136--26893164	9	3.2	9	100	0	58	68	10	0	20	1.18
26893814--26893865	21	2.5	21	81	6	70	48	1	21	28	1.61
26894347--26894422	20	3.8	20	80	0	89	11	25	21	42	1.86
26899052--26899109	26	2.2	27	79	14	68	32	1	1	63	1.14
26899087--26899127	20	2.1	19	86	4	55	36	0	2	60	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26899718--26899753	10	3.5	10	85	7	54	19	0	2	77	0.88
26899711--26899763	19	2.7	20	79	5	63	24	3	1	69	1.15
26899718--26899763	21	2.2	21	88	3	67	21	2	2	73	1.04
26899643--26899751	56	1.9	58	83	9	143	32	1	0	65	1.10
26902514--26902543	12	2.5	12	88	0	51	90	0	10	0	0.47
26911836--26911906	35	2.0	35	94	0	124	47	4	4	43	1.42
26913665--26913691	14	1.9	14	100	0	54	40	7	0	51	1.30
26914368--26914393	13	2.0	13	100	0	52	38	15	23	23	1.92
26929296--26929365	23	3.0	23	74	14	72	47	0	11	41	1.40
26929186--26929483	149	2.0	152	88	3	451	43	6	11	39	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153