genome.fa.s18.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  142  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44531756--44531802	22	2.2	21	84	3	58	19	12	31	36	1.89
44540528--44540613	43	2.0	43	88	0	127	23	19	18	38	1.93
44547667--44548587	102	9.0	102	98	0	1752	18	23	17	40	1.91
44550888--44550932	20	2.1	22	84	12	58	13	11	8	66	1.44
44555255--44555288	13	2.5	13	95	4	59	41	5	8	44	1.60
44555583--44556021	67	6.6	67	98	0	824	17	22	18	41	1.91
44558148--44558192	20	2.1	22	84	12	58	13	11	8	66	1.44
44558526--44558685	67	2.5	62	74	16	155	49	5	3	41	1.42
44558946--44558982	18	2.0	19	94	5	67	32	27	5	35	1.79
44561942--44561985	17	2.4	18	85	11	54	47	0	20	31	1.50
44562076--44562135	30	2.0	31	83	9	79	41	0	38	20	1.52
44562246--44562307	30	2.1	30	90	0	97	43	0	37	19	1.51
44562349--44562385	9	4.1	9	92	0	65	29	10	13	45	1.77
44570518--44570608	46	2.0	47	86	6	132	31	20	18	28	1.97
44576341--44576383	22	2.0	22	100	0	86	34	9	9	46	1.68
44578430--44578494	25	2.6	25	90	2	103	24	24	21	29	1.99
44579021--44579063	6	6.8	6	89	5	59	16	4	0	79	0.90
44580281--44580320	20	2.1	18	86	13	53	25	15	2	57	1.50
44583033--44583074	21	2.0	21	81	9	50	38	4	14	42	1.66
44584392--44584446	27	2.0	28	89	3	85	61	0	23	14	1.33
44584896--44584934	15	2.5	16	87	4	53	51	2	25	20	1.60
44584886--44585036	40	3.8	40	91	1	216	50	3	23	22	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44584992--44585061	23	3.0	24	83	6	81	50	4	24	21	1.67
44602565--44602670	32	3.2	32	65	15	81	50	6	7	34	1.57
44602545--44602674	66	2.0	66	92	0	215	50	6	10	33	1.62
44603769--44603812	22	2.0	22	82	8	54	38	2	0	59	1.10
44619066--44619240	57	3.1	56	80	10	210	29	20	5	44	1.74
44619516--44619568	27	2.0	27	100	0	106	26	16	11	45	1.82
44628347--44628419	23	3.2	21	81	9	74	43	24	17	13	1.86
44632515--44632557	7	6.1	7	91	0	50	76	0	2	20	0.89
44632515--44632551	7	5.3	7	96	0	56	78	0	0	21	0.75
44632515--44632569	14	3.8	14	82	4	65	72	0	1	25	0.94
44644294--44644338	23	2.0	22	83	12	56	48	11	6	33	1.65
44647799--44647880	22	3.6	22	72	6	65	34	10	18	36	1.86
44647877--44647914	20	1.9	20	84	10	51	28	21	18	31	1.97
44649642--44649673	13	2.5	13	89	0	55	50	28	0	21	1.49
44650165--44650268	20	5.3	19	72	7	84	38	18	30	12	1.88
44650154--44650277	20	6.3	20	70	10	76	37	16	29	15	1.90
44650154--44650282	39	3.3	39	85	5	188	37	17	29	15	1.90
44652346--44652383	19	2.1	18	85	14	51	57	0	0	42	0.98
44652985--44653018	17	1.9	18	94	5	61	29	5	0	64	1.17
44652552--44653188	313	2.0	315	93	1	1098	34	13	11	40	1.80
44659831--44659873	22	2.0	22	86	9	61	62	0	6	30	1.21
44665350--44665389	13	2.9	14	81	7	55	72	0	22	5	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44665345--44665405	21	2.9	21	77	15	63	72	0	21	6	1.07
44665351--44665403	27	1.9	28	85	11	74	71	0	20	7	1.10
44665372--44665417	21	2.1	22	84	4	58	67	2	23	6	1.25
44673088--44673144	20	2.5	24	72	24	68	29	29	10	29	1.90
44673510--44673546	16	2.3	16	95	0	65	16	5	18	59	1.55
44686155--44686198	21	2.1	21	95	0	79	36	15	11	36	1.84
44697080--44697133	26	2.1	26	82	6	65	27	5	7	59	1.47
44699457--44699481	12	2.1	12	100	0	50	12	8	32	48	1.69
44705025--44705133	54	2.0	55	90	3	168	43	10	27	18	1.82
44705409--44705458	15	3.4	14	83	8	64	70	2	26	2	1.09
44705409--44705457	3	16.7	3	81	12	57	69	2	26	2	1.10
44705399--44705451	23	2.3	23	81	12	65	73	1	22	1	1.03
44713560--44713778	25	8.8	25	69	13	132	21	23	19	36	1.95
44719482--44719521	14	2.9	14	84	0	53	32	7	17	42	1.77
44719505--44719543	20	2.0	20	89	0	60	28	10	12	48	1.74
44724023--44724263	50	4.8	50	79	0	214	23	28	20	27	1.99
44726400--44726528	25	5.2	24	70	12	82	35	21	24	18	1.95
44728155--44728239	42	2.0	42	86	0	116	30	28	15	25	1.96
44731700--44731740	20	2.0	20	85	0	55	63	2	0	34	1.08
44731815--44731867	25	2.1	25	92	0	88	24	37	11	26	1.89
44736814--44737139	82	4.0	82	98	0	616	44	20	16	18	1.87
44737283--44737307	7	3.6	7	100	0	50	44	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44737772--44737796	5	5.0	5	100	0	50	80	0	0	20	0.72
44738178--44738208	9	3.4	9	90	0	53	25	12	22	38	1.90
44738176--44738218	18	2.3	18	92	4	68	32	13	18	34	1.90
44742008--44742090	26	3.2	25	68	21	64	32	21	12	33	1.90
44741907--44742090	51	3.6	50	77	3	181	31	23	12	32	1.92
44745061--44745358	123	2.5	119	84	4	384	46	7	16	29	1.74
44748767--44748923	43	3.7	42	78	9	142	29	25	18	26	1.98
44754801--44754848	23	2.1	23	92	0	78	58	8	4	29	1.46
44756171--44756264	41	2.2	41	81	3	98	34	24	14	26	1.94
44761970--44762571	301	2.0	301	96	0	1105	35	15	15	33	1.89
44770851--44770913	23	2.7	23	72	16	58	49	7	3	39	1.48
44771138--44771209	31	2.3	31	90	4	110	38	13	9	37	1.78
44771688--44772196	128	4.0	128	98	0	964	31	12	24	30	1.92
44782740--44782909	84	2.1	82	91	5	272	45	7	9	36	1.65
44782838--44782881	20	2.2	20	88	8	63	63	0	13	22	1.29
44792837--44792926	31	2.9	31	100	0	180	43	12	6	37	1.68
44804742--44804794	23	2.3	22	81	9	61	9	9	1	79	1.02
44805912--44805963	26	2.0	26	85	7	70	32	9	5	51	1.58
44807337--44807378	19	2.2	19	83	8	50	38	4	0	57	1.20
44815112--44815162	21	2.4	21	80	3	57	54	9	3	31	1.51
44817355--44817409	4	13.8	4	74	14	51	74	0	25	0	0.82
44817355--44817397	9	4.8	9	86	11	61	79	0	20	0	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44817553--44817587	16	2.2	16	89	0	52	37	0	5	57	1.23
44821128--44821191	20	3.2	20	86	4	76	32	15	28	23	1.95
44821128--44821194	30	2.2	30	80	12	75	35	14	26	22	1.93
44825499--44825540	18	2.3	18	84	8	50	61	7	2	28	1.35
44825624--44825685	30	2.1	30	90	0	97	59	9	1	29	1.38
44825714--44825761	11	4.4	11	78	0	51	60	8	10	20	1.55
44825715--44825757	22	2.0	22	90	0	68	58	9	11	20	1.61
44825722--44825762	11	3.7	11	80	0	55	56	9	14	19	1.66
44834855--44834892	20	1.9	20	94	0	67	31	10	26	31	1.90
44837453--44837485	13	2.5	13	95	0	57	12	33	9	45	1.73
44839071--44839098	6	4.7	6	100	0	56	67	0	0	32	0.91
44843459--44843492	16	2.1	17	89	10	54	52	0	5	41	1.25
44853007--44853053	23	2.0	22	84	12	58	48	23	8	19	1.75
44853315--44853345	14	2.2	14	94	0	53	61	16	6	16	1.54
44856480--44856834	188	1.9	183	90	2	557	27	8	21	42	1.82
44863964--44864001	20	1.9	20	84	10	51	55	0	2	42	1.14
44873235--44873281	14	3.4	14	73	5	51	36	0	6	57	1.24
44873235--44873288	27	2.0	27	96	0	99	35	0	9	55	1.32
44875755--44875835	6	14.2	5	79	18	63	24	22	0	53	1.47
44875758--44875816	18	3.3	18	82	15	70	22	23	0	54	1.45
44875763--44875827	29	2.2	29	79	12	71	21	23	0	55	1.44
44878100--44878345	90	2.7	90	79	7	257	23	6	12	58	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44880914--44880960	16	2.9	15	84	15	58	19	12	0	68	1.21
44880869--44880987	56	2.1	56	86	6	161	21	14	0	63	1.36
44880913--44880987	39	1.9	39	89	5	116	21	13	0	65	1.26
44880930--44880979	23	2.2	23	86	10	68	24	14	0	62	1.32
44880896--44880984	17	5.0	16	71	20	52	23	15	0	60	1.35
44881107--44881181	34	2.2	33	88	2	105	28	9	1	61	1.35
44881494--44881556	6	11.2	6	72	13	53	33	3	1	61	1.21
44881862--44881924	22	2.8	21	86	11	81	28	15	1	53	1.51
44881976--44882033	11	5.1	11	80	14	64	24	15	0	60	1.35
44881978--44882033	23	2.5	21	83	16	76	23	16	0	60	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153