genome.fa.s18.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  85  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26934016--26934053	16	2.4	16	91	4	60	84	5	10	0	0.77
26943860--26943896	18	2.1	18	100	0	74	35	10	32	21	1.88
26945201--26945234	15	2.2	16	94	5	61	85	14	0	0	0.60
26945238--26945271	2	17.0	2	87	0	50	52	2	44	0	1.16
26945234--26945271	14	2.7	14	91	0	58	55	2	42	0	1.14
26945673--26945840	42	4.0	42	87	0	237	23	19	22	34	1.97
26946294--26946369	3	25.0	3	86	2	62	35	10	0	53	1.35
26946687--26947285	146	4.1	147	85	5	816	41	5	9	43	1.59
26946697--26947277	293	2.0	296	88	3	868	41	4	9	43	1.59
26947477--26947991	147	3.5	146	86	4	741	41	4	9	44	1.57
26946754--26948178	710	2.0	710	99	0	2789	39	7	13	39	1.72
26948721--26948809	44	2.0	44	100	0	178	22	8	4	64	1.41
26948742--26948811	20	3.3	20	68	27	63	21	7	4	67	1.33
26957661--26957699	19	2.1	19	95	0	69	30	0	10	58	1.31
26973639--26974875	618	2.0	618	100	0	2474	25	17	25	32	1.97
26975215--26975252	18	2.1	18	85	9	51	44	5	15	34	1.69
26980031--26980094	32	2.0	32	93	0	110	39	9	21	29	1.85
26985446--26985486	18	2.3	18	87	4	57	51	4	0	43	1.23
26985603--26985645	18	2.3	18	80	11	52	48	20	0	30	1.50
26986108--26986156	14	3.7	13	81	13	55	71	0	2	26	0.97
26991827--26991914	40	2.2	41	83	4	115	30	1	10	57	1.39
26991968--26992004	19	1.9	19	88	0	56	21	10	8	59	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26993202--26993255	25	2.1	26	96	3	101	38	7	31	22	1.82
27002973--27003011	19	2.1	19	95	0	69	46	25	7	20	1.77
27006163--27006212	13	3.7	14	82	10	52	48	28	6	18	1.71
27006165--27006210	20	2.3	20	88	7	67	47	30	4	17	1.67
27010524--27010565	21	2.0	21	86	9	59	26	4	19	50	1.67
27011736--27011777	21	2.0	21	100	0	84	23	14	28	33	1.94
27016083--27016119	19	1.9	19	94	0	65	29	5	0	64	1.15
27019476--27019836	174	2.1	172	80	7	403	42	9	11	36	1.72
27020163--27020238	38	2.0	39	92	2	127	53	1	11	32	1.45
27023519--27023568	25	2.0	25	88	4	73	66	6	22	6	1.36
27029845--27029902	28	2.1	28	86	0	80	46	1	13	37	1.54
27029908--27029951	21	2.2	21	84	8	56	59	11	4	25	1.51
27034061--27034261	71	2.8	71	79	6	219	29	18	22	29	1.98
27042922--27042954	15	2.2	15	89	10	50	42	0	0	57	0.98
27045945--27045988	19	2.4	19	88	3	63	79	0	20	0	0.73
27045950--27045990	22	1.9	21	85	5	55	78	0	21	0	0.76
27047548--27047584	20	1.9	18	89	10	56	37	0	8	54	1.30
27050359--27050427	34	2.0	34	97	0	129	47	8	13	30	1.72
27050919--27050962	21	2.1	21	100	0	88	52	9	15	22	1.71
27056211--27056255	15	2.9	15	90	3	63	77	0	22	0	0.76
27056204--27056256	22	2.4	22	84	12	65	81	0	18	0	0.70
27056206--27056243	19	2.0	20	89	5	60	81	0	18	0	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27057482--27058090	132	4.7	132	89	3	944	30	21	24	23	1.99
27057526--27058047	257	2.0	257	95	0	945	30	20	24	24	1.99
27058052--27058638	44	13.6	43	70	12	312	27	20	23	28	1.99
27058049--27058508	172	2.7	172	92	3	721	28	20	23	28	1.99
27058142--27058419	84	3.3	84	73	12	314	28	21	21	28	1.99
27058221--27058640	217	1.9	217	89	0	644	27	20	23	28	1.99
27058569--27058684	44	2.7	44	80	12	132	29	20	22	27	1.99
27058993--27059056	19	3.3	19	89	8	101	39	10	14	35	1.81
27058994--27059069	21	3.7	21	91	3	111	40	11	11	35	1.79
27059349--27059399	21	2.4	21	100	0	102	52	9	13	23	1.70
27063493--27063531	20	2.1	18	85	9	51	38	2	15	43	1.60
27066935--27066959	13	1.9	13	100	0	50	48	0	52	0	1.00
27067545--27067617	18	3.5	20	74	14	60	34	5	1	58	1.29
27067556--27067590	18	1.9	18	94	0	61	34	2	2	60	1.26
27075161--27075253	39	2.5	37	80	7	98	27	29	22	20	1.98
27075429--27075473	22	2.0	24	82	8	58	37	22	0	40	1.54
27075423--27075473	23	2.2	23	82	10	59	37	21	0	41	1.54
27076345--27076378	17	2.1	16	88	5	50	2	14	5	76	1.09
27076367--27076417	14	3.6	14	76	7	50	17	13	0	68	1.21
27076567--27076603	14	2.4	17	86	13	53	51	0	0	48	1.00
27077819--27077851	13	2.5	13	95	0	57	45	24	9	21	1.80
27079329--27079371	14	3.1	14	76	6	52	53	2	0	44	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27080141--27080172	3	10.7	3	100	0	64	68	0	0	31	0.90
27082899--27082932	15	2.3	15	94	0	59	58	11	14	14	1.63
27082929--27082966	17	2.2	18	85	4	51	68	5	0	26	1.11
27094013--27094071	22	2.6	23	84	10	68	55	5	5	33	1.43
27100395--27100624	90	2.6	90	90	1	363	26	6	12	55	1.59
27104626--27104822	105	1.9	105	81	4	245	31	18	24	25	1.97
27105547--27105594	20	2.4	20	100	0	96	37	0	18	43	1.51
27105832--27105894	6	11.6	5	88	6	54	20	20	1	57	1.50
27105840--27105884	6	7.8	6	90	7	67	20	26	0	53	1.46
27105840--27105889	17	2.9	17	91	5	75	22	24	0	54	1.45
27105832--27105894	23	2.9	22	86	6	83	20	20	1	57	1.50
27105879--27105932	20	2.6	21	82	14	67	27	11	0	61	1.30
27105920--27105966	17	2.7	18	80	6	62	21	10	4	63	1.43
27105988--27106104	5	21.4	5	72	22	67	29	17	0	52	1.46
27105988--27106033	24	1.9	24	90	0	74	26	21	0	52	1.47
27105976--27106105	52	2.5	52	84	10	167	30	17	0	51	1.46
27106009--27106104	18	5.6	17	75	16	83	30	16	0	53	1.44
27106015--27106103	23	3.6	24	72	25	78	31	16	0	51	1.45
27105976--27106104	35	3.7	35	73	14	86	30	17	0	51	1.46
27106194--27106242	22	2.1	25	85	11	68	26	12	0	61	1.31
27106511--27106568	5	10.6	5	80	14	62	18	18	1	60	1.45
27106514--27106573	23	2.7	23	89	7	88	23	18	1	56	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27106511--27106568	17	3.5	16	77	13	64	18	18	1	60	1.45
27106560--27106619	24	2.6	25	84	12	83	26	8	0	65	1.21
27106532--27106792	48	5.5	48	81	9	297	22	13	0	62	1.36
27106505--27106760	22	11.1	22	71	20	136	23	13	0	62	1.35
27106704--27106783	27	3.2	26	72	20	89	25	12	0	62	1.30
27124928--27124975	10	4.8	10	79	7	53	41	8	2	47	1.45
27128131--27128198	30	2.2	30	78	2	73	64	8	0	26	1.22
27146885--27146915	16	1.9	16	100	0	62	38	32	0	29	1.57
27148391--27148425	18	2.0	17	88	5	52	45	0	0	54	0.99
27148299--27148682	120	3.2	120	98	0	741	43	2	5	48	1.39
27148511--27148545	18	2.0	17	88	5	52	45	0	0	54	0.99
27148631--27148665	18	2.0	17	88	5	52	45	0	0	54	0.99
27148904--27148939	16	2.2	16	100	0	72	38	36	0	25	1.56
27151059--27151112	20	2.6	21	77	17	58	55	11	0	33	1.35
27153810--27153866	30	1.9	30	85	7	80	40	1	3	54	1.28
27159233--27159261	3	10.0	3	92	7	51	68	0	0	31	0.89
27163475--27163531	28	2.0	28	81	18	66	38	5	7	49	1.53
27163803--27163841	14	2.9	14	96	3	71	43	0	0	56	0.99
27163793--27163834	14	2.7	16	82	17	61	45	2	0	52	1.13
27163803--27163841	13	2.9	13	92	3	60	43	0	0	56	0.99
27171853--27171923	27	2.8	26	69	24	62	49	5	1	43	1.35
27172447--27172487	21	2.0	21	90	4	66	70	4	0	24	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27172474--27172527	19	2.7	20	82	5	65	64	3	1	29	1.21
27188919--27188972	20	2.6	21	77	17	58	55	12	0	31	1.38
27194412--27194471	30	2.0	30	87	3	86	43	3	23	30	1.70
27194681--27194712	13	2.5	13	94	0	55	31	0	12	56	1.37
27194811--27195045	51	4.6	51	100	0	470	28	27	25	18	1.98
27197198--27197446	50	4.8	50	85	4	284	20	29	24	26	1.99
27197197--27197446	100	2.4	104	88	6	357	20	29	24	26	1.99
27197541--27197572	13	2.5	13	94	0	55	56	12	0	31	1.37
27197784--27197841	30	1.9	30	89	0	89	31	24	3	41	1.71
27210877--27210924	12	3.8	12	76	17	53	70	4	0	25	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153