genome.fa.s18.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  123  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38704702--38704849	56	2.8	54	83	6	169	24	28	18	28	1.98
38732525--38732557	16	2.1	16	100	0	66	63	12	0	24	1.28
38739638--38739675	16	2.5	15	91	8	67	78	0	2	18	0.86
38740058--38740208	78	1.9	78	80	7	173	35	1	5	57	1.33
38743539--38743569	16	1.9	16	93	0	53	41	6	25	25	1.79
38743551--38743683	44	3.0	44	87	4	178	38	5	19	36	1.74
38749416--38749448	13	2.6	13	90	4	50	75	0	24	0	0.80
38754873--38754928	15	3.9	14	75	13	51	58	0	5	35	1.21
38756120--38756353	24	9.8	24	78	3	139	33	35	11	20	1.88
38756118--38756373	48	5.3	48	69	11	157	33	35	10	19	1.87
38756115--38756404	72	4.0	72	74	7	194	34	34	10	20	1.87
38756194--38756438	24	10.2	24	78	7	99	31	34	12	21	1.90
38756451--38756548	32	3.1	32	83	5	117	23	12	24	39	1.89
38756585--38756656	23	3.1	23	87	0	99	36	18	18	27	1.94
38756984--38757349	183	2.0	183	96	1	671	32	15	18	34	1.91
38757425--38757467	18	2.4	18	76	0	50	20	11	9	58	1.61
38758009--38758095	42	2.1	42	100	0	174	36	16	18	28	1.92
38765624--38765842	90	2.4	92	83	2	264	37	18	10	33	1.85
38766010--38766039	11	2.7	11	100	0	60	76	0	6	16	0.99
38766235--38766386	11	15.3	11	67	22	54	27	5	1	65	1.22
38766231--38766463	10	23.9	10	68	17	91	30	3	0	64	1.17
38766237--38766403	29	5.8	29	78	10	103	27	4	1	66	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38766334--38766375	18	2.3	18	95	4	75	26	4	0	69	1.08
38766372--38766406	17	2.1	17	88	0	52	28	0	0	71	0.86
38766430--38766475	19	2.4	19	85	3	56	34	0	2	63	1.07
38766351--38766474	29	4.3	29	75	11	71	33	1	0	64	1.09
38766549--38766755	91	2.3	87	82	7	256	36	10	19	33	1.86
38766581--38766785	91	2.3	90	83	5	243	36	9	18	35	1.84
38770869--38770902	16	2.1	16	94	0	59	52	5	8	32	1.56
38771343--38771459	11	11.4	11	69	22	67	60	0	1	37	1.07
38771344--38771466	40	3.1	41	81	4	135	60	0	1	37	1.06
38771343--38771459	50	2.3	51	92	2	191	60	0	1	37	1.07
38771395--38771474	39	2.1	38	90	2	124	65	0	1	33	1.01
38773467--38773538	35	2.1	35	100	0	144	30	16	13	38	1.88
38774352--38774397	9	5.1	9	94	0	83	23	10	21	43	1.84
38776918--38776944	7	3.9	7	100	0	54	29	0	0	70	0.88
38777013--38777071	19	2.9	19	80	7	55	52	1	3	42	1.28
38778232--38778284	27	1.9	28	96	3	99	64	22	1	11	1.36
38787127--38787160	17	2.0	17	88	0	50	23	11	17	47	1.81
38792063--38792569	254	2.0	253	92	1	847	34	22	13	30	1.92
38796151--38796178	11	2.5	11	100	0	56	7	39	10	42	1.67
38802868--38803076	92	2.3	91	86	5	278	45	3	3	46	1.39
38803004--38803051	26	1.9	25	84	16	64	45	0	2	52	1.12
38803226--38803267	15	2.7	16	82	14	52	45	0	2	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38803217--38803258	15	2.9	15	82	10	52	47	0	0	52	1.00
38803402--38803436	16	2.2	16	100	0	70	57	11	0	31	1.34
38803473--38803523	18	3.0	18	78	18	56	47	0	0	52	1.00
38803742--38803777	16	2.2	16	95	0	63	41	33	0	25	1.55
38806994--38807045	23	2.3	23	89	0	77	50	13	0	36	1.42
38810075--38810109	17	2.1	17	100	0	70	48	22	11	17	1.79
38810559--38810624	33	2.0	33	90	0	105	33	25	12	28	1.92
38814291--38814333	19	2.4	19	88	7	63	83	4	6	4	0.89
38814740--38815077	42	8.1	42	83	3	396	23	21	21	34	1.97
38814740--38815077	126	2.7	124	86	4	446	23	21	21	34	1.97
38815084--38815114	16	1.9	16	100	0	62	19	19	9	51	1.74
38815478--38815514	3	12.3	3	100	0	74	35	32	0	32	1.58
38815585--38815610	5	5.2	5	100	0	52	61	0	19	19	1.35
38816077--38816136	31	2.0	30	83	3	75	35	3	6	55	1.43
38815878--38816156	148	1.9	150	84	3	377	40	3	10	44	1.58
38816131--38816175	19	2.3	20	92	3	74	44	0	11	44	1.39
38816140--38816182	19	2.3	18	84	11	59	53	0	9	37	1.33
38816132--38816201	20	3.5	20	83	11	74	45	2	8	42	1.49
38817517--38817542	3	8.7	3	100	0	52	69	0	0	30	0.89
38824629--38824672	23	1.9	22	82	17	54	36	25	0	38	1.56
38824717--38824810	45	2.1	45	87	0	134	32	23	17	26	1.96
38827642--38827678	16	2.3	17	86	9	51	24	5	0	70	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38828161--38828372	98	2.1	97	81	6	228	29	16	11	42	1.83
38834591--38834769	95	1.9	95	97	0	340	36	13	17	32	1.89
38840949--38840977	14	2.1	14	100	0	58	20	37	6	34	1.80
38841112--38841207	47	2.0	47	100	0	192	37	12	16	33	1.86
38845977--38846036	22	2.7	23	73	19	63	66	6	0	26	1.16
38845986--38846019	4	8.0	4	90	9	50	73	2	0	23	0.97
38847373--38847425	23	2.4	22	76	20	56	9	18	1	69	1.25
38855363--38857563	146	15.1	146	99	0	4366	36	10	16	36	1.83
38867399--38867424	12	2.2	12	100	0	52	50	11	15	23	1.76
38885134--38885393	85	3.0	86	82	6	289	45	10	9	34	1.72
38885436--38885842	77	5.2	78	83	3	440	38	11	14	35	1.82
38887364--38887434	33	2.2	33	84	0	88	52	2	2	42	1.31
38891668--38891714	24	2.0	24	100	0	94	34	17	21	27	1.95
38892732--38892788	29	2.0	29	89	0	87	26	12	29	31	1.92
38896124--38896163	12	3.3	12	82	0	53	15	22	2	60	1.47
38896262--38896314	21	2.5	20	87	9	70	7	26	0	66	1.18
38896262--38896314	20	2.5	21	85	14	65	7	26	0	66	1.18
38900952--38901012	29	2.1	30	84	9	81	45	14	8	31	1.74
38901231--38901278	24	2.0	23	84	4	60	62	2	0	35	1.07
38901424--38901470	23	2.1	22	84	11	60	4	65	2	27	1.22
38909975--38910023	17	2.9	17	81	0	62	42	18	8	30	1.79
38910250--38910292	20	2.2	20	100	0	86	32	34	9	23	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38912335--38912380	20	2.3	20	96	0	83	23	23	4	47	1.69
38915754--38915787	18	1.9	17	88	5	50	26	2	0	70	1.01
38925466--38925507	17	2.4	18	84	7	52	47	14	0	38	1.44
38954697--38954723	14	1.9	14	100	0	54	14	25	22	37	1.93
38958041--38958067	14	1.9	14	100	0	54	14	25	22	37	1.93
38959386--38959431	22	2.1	22	84	8	58	41	2	8	47	1.46
38961958--38962173	27	8.0	27	80	6	179	16	17	21	44	1.86
38961963--38962173	54	3.9	53	82	4	219	15	18	21	45	1.86
38961962--38962173	81	2.6	80	83	2	246	16	17	21	44	1.86
38961963--38962212	81	3.1	80	79	6	202	17	17	20	44	1.87
38967487--38967519	17	1.9	17	100	0	66	18	12	12	57	1.64
38983514--38983543	9	3.4	9	95	4	53	80	0	0	20	0.72
38985923--38985965	22	2.0	22	81	9	52	32	6	23	37	1.82
38992299--38992364	13	5.1	13	80	7	80	31	7	22	37	1.82
38998068--38998105	6	6.2	6	93	6	67	2	15	0	81	0.80
38999705--38999918	107	2.0	108	79	6	236	40	15	11	33	1.83
39007221--39007266	18	2.5	19	79	6	51	60	10	0	28	1.30
39007406--39007472	29	2.3	29	82	12	75	34	11	4	49	1.60
39017445--39017489	14	3.1	14	87	3	63	2	22	2	73	1.05
39018128--39018234	54	2.0	54	96	0	196	27	17	17	37	1.93
39019600--39019629	11	2.8	11	95	5	53	16	6	6	70	1.31
39024581--39024627	18	2.4	20	75	17	53	46	4	6	42	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39024634--39024665	16	1.9	17	93	6	57	59	6	3	31	1.38
39024762--39024823	23	2.4	25	80	17	74	43	6	4	45	1.51
39024762--39024822	27	2.4	24	82	15	70	42	6	4	45	1.51
39026092--39026140	21	2.3	20	83	16	64	51	8	0	40	1.32
39026638--39026685	25	2.0	24	91	4	78	39	4	4	52	1.40
39026639--39026691	25	2.2	25	86	3	72	39	3	5	50	1.44
39027077--39027103	12	2.2	12	100	0	54	48	11	0	40	1.39
39029220--39029284	32	2.0	32	96	0	121	24	20	6	49	1.71
39037625--39037767	47	3.0	47	98	0	277	41	23	17	16	1.89
39042135--39042231	29	3.3	31	81	10	105	28	12	22	36	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153