genome.fa.s18.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  94  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29669112--29669211	50	2.0	50	96	0	182	31	19	24	26	1.98
29682282--29682436	51	3.0	52	83	3	208	23	15	29	32	1.95
29687355--29687398	21	2.1	21	83	8	54	25	9	2	63	1.35
29692594--29692668	30	2.5	30	89	2	107	53	9	13	24	1.68
29693549--29693619	26	2.8	25	81	10	81	59	4	1	35	1.26
29693717--29693761	22	2.2	22	84	11	60	37	15	24	22	1.93
29693763--29693802	16	2.5	16	80	15	55	32	0	0	67	0.91
29697045--29697096	18	3.0	18	80	8	54	61	3	7	26	1.41
29697123--29697154	9	3.6	9	91	0	55	68	25	0	6	1.12
29698109--29698168	25	2.4	25	86	8	79	58	6	16	18	1.59
29699739--29700526	390	2.0	390	96	0	1459	23	26	13	36	1.92
29701762--29701801	18	2.2	18	86	0	53	65	2	7	25	1.32
29701774--29701826	18	3.1	18	81	10	58	62	3	7	26	1.39
29701853--29701908	3	18.7	3	96	0	103	67	30	0	1	1.01
29707471--29707515	18	2.3	20	85	11	58	0	15	8	75	1.03
29708335--29708400	24	2.8	24	74	2	71	25	10	9	54	1.64
29709267--29709293	12	2.2	12	100	0	54	40	18	14	25	1.89
29714070--29714113	22	2.0	22	90	0	70	25	29	11	34	1.91
29718660--29718764	45	2.3	45	85	1	147	43	22	15	18	1.87
29720151--29720195	9	5.1	9	82	15	58	53	2	0	44	1.13
29723223--29723266	21	2.1	21	83	8	54	36	4	0	59	1.18
29726537--29726575	19	2.1	19	100	0	78	15	10	38	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29733260--29733298	18	2.2	18	85	0	51	12	23	2	61	1.43
29743674--29743716	20	2.2	20	84	16	54	62	0	4	32	1.15
29746031--29746106	24	3.2	24	90	0	107	50	9	3	36	1.53
29746780--29746856	36	2.2	35	95	2	136	23	24	15	35	1.94
29751848--29751892	21	2.1	22	83	4	56	33	4	13	48	1.62
29756925--29757028	49	2.1	49	90	0	163	30	6	12	50	1.66
29761899--29761953	18	3.2	18	72	10	53	12	16	0	70	1.16
29763016--29763232	107	2.0	108	93	0	373	31	19	19	29	1.96
29766757--29766803	23	2.0	23	95	0	85	31	17	10	40	1.83
29767225--29767345	40	3.0	40	81	1	136	38	22	17	21	1.93
29767390--29767590	41	4.9	41	85	6	239	22	19	25	32	1.97
29767384--29767590	82	2.5	83	84	6	271	21	19	26	32	1.97
29770412--29770498	43	2.0	43	88	0	129	33	11	11	43	1.77
29770765--29771031	43	6.3	43	84	3	297	25	17	29	27	1.98
29770765--29771054	129	2.3	128	83	2	332	26	17	27	27	1.98
29772328--29772408	38	2.0	40	86	6	112	38	3	7	50	1.48
29772871--29772917	18	2.7	17	72	18	51	72	0	12	14	1.13
29792528--29793921	458	3.0	458	90	5	2066	30	16	16	36	1.91
29793109--29794057	475	2.0	475	98	0	1853	30	15	16	37	1.89
29795575--29796552	102	9.6	101	96	1	1730	18	22	18	39	1.92
29801700--29801795	45	2.1	45	96	0	174	33	11	23	31	1.90
29802344--29802429	40	2.1	41	95	2	156	32	11	23	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29813648--29813699	4	13.0	4	91	0	59	26	7	23	42	1.81
29816780--29816831	15	3.2	15	73	19	50	44	1	1	51	1.23
29816864--29816900	16	2.3	16	86	13	58	40	0	0	59	0.97
29816912--29816967	22	2.6	22	83	5	62	51	0	0	48	1.00
29818439--29818467	14	2.0	15	93	6	51	27	3	0	68	1.05
29822106--29822173	36	1.9	36	82	5	86	42	23	2	30	1.69
29822160--29822215	25	2.2	25	93	0	94	35	37	3	23	1.72
29822248--29822329	41	2.0	41	95	0	146	42	13	15	28	1.85
29822928--29822965	19	2.0	20	89	5	60	10	7	5	76	1.15
29822982--29823007	5	5.2	5	100	0	52	61	0	0	38	0.96
29823555--29823621	22	3.3	22	72	20	81	59	16	2	20	1.50
29823570--29823630	17	3.3	17	71	20	59	65	13	1	19	1.34
29823551--29823630	39	2.1	39	100	0	160	62	15	2	20	1.43
29824937--29825014	2	39.0	2	97	0	147	50	48	0	1	1.09
29825229--29825398	39	4.3	39	88	0	223	23	25	18	31	1.97
29833137--29833306	39	4.3	39	90	0	232	22	25	19	31	1.98
29841266--29841295	14	2.1	14	93	0	51	90	0	10	0	0.47
29841474--29841515	16	2.7	16	74	3	50	35	16	4	42	1.69
29844549--29844601	26	2.0	26	96	0	97	22	13	3	60	1.49
29850803--29850966	25	6.7	24	72	14	97	35	21	26	17	1.95
29850813--29850956	25	5.9	24	71	18	102	33	21	26	18	1.97
29850816--29850956	73	1.9	73	84	5	187	32	21	26	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29853773--29853863	19	4.9	19	89	8	152	36	10	15	37	1.83
29853773--29853863	35	2.5	37	91	8	159	36	10	15	37	1.83
29853761--29853863	54	1.9	53	90	5	163	36	11	13	37	1.81
29853773--29853886	19	5.8	22	78	17	87	35	9	15	38	1.81
29856526--29856565	19	2.1	19	85	0	53	55	0	7	37	1.29
29856568--29856706	7	20.0	7	67	17	58	58	1	3	35	1.24
29856651--29856705	15	3.4	16	85	12	69	61	1	0	36	1.06
29856648--29856705	10	5.6	10	77	18	57	62	1	0	36	1.06
29865032--29865315	78	3.6	78	91	0	444	32	17	25	24	1.97
29865355--29865525	89	1.9	89	89	0	261	29	14	29	26	1.95
29865266--29865539	45	6.1	45	76	8	252	31	14	27	26	1.95
29865890--29865980	19	4.9	19	89	8	152	36	10	15	37	1.83
29865890--29865980	35	2.5	37	91	8	159	36	10	15	37	1.83
29865878--29865980	54	1.9	53	90	5	163	36	11	13	37	1.81
29865890--29866003	19	5.8	22	78	17	87	35	9	15	38	1.81
29868319--29868377	30	2.0	30	89	0	91	44	22	13	20	1.86
29869688--29869765	26	3.2	26	63	20	69	17	7	25	48	1.74
29869711--29869782	24	3.1	24	61	15	60	13	6	26	52	1.66
29869688--29869782	46	2.1	46	97	0	181	14	7	26	51	1.68
29872559--29872589	9	3.3	9	91	8	53	22	0	0	77	0.77
29877783--29877825	18	2.4	18	84	3	52	4	11	2	81	0.93
29878310--29878369	26	2.3	25	85	5	75	46	1	0	51	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29879042--29879085	21	2.0	22	86	4	63	56	6	0	36	1.26
29879337--29879366	14	2.2	14	94	5	53	40	6	13	40	1.71
29882671--29882701	15	2.1	15	100	0	62	54	12	0	32	1.38
29883140--29883173	16	2.2	15	89	5	50	38	0	0	61	0.96
29894173--29894241	36	1.9	36	90	0	111	23	30	5	40	1.78
29895900--29896138	49	4.8	48	80	6	264	29	26	18	25	1.98
29895914--29896145	100	2.3	99	86	4	324	29	27	18	25	1.98
29897483--29897588	53	2.0	54	98	1	205	36	17	11	33	1.86
29899344--29899421	26	3.0	26	88	3	131	17	11	20	50	1.77
29899341--29899416	25	3.0	25	90	1	125	21	11	18	48	1.79
29902216--29902261	24	1.9	24	100	0	92	17	15	17	50	1.79
29902245--29902278	17	2.0	17	100	0	68	17	11	23	47	1.81
29905067--29905092	13	2.0	13	100	0	52	0	7	7	84	0.77
29909288--29909325	18	2.1	18	95	0	67	52	23	2	21	1.59
29909538--29909572	17	2.1	17	100	0	70	25	22	11	40	1.88
29918850--29918886	3	12.3	3	88	0	56	32	5	0	62	1.18
29921929--29921963	3	11.7	3	100	0	70	0	0	31	68	0.90
29928516--29928559	22	2.0	21	91	4	70	11	27	11	47	1.73
29931998--29932031	18	1.9	17	94	5	59	67	2	23	5	1.26
29934544--29934583	16	2.5	15	88	8	53	35	0	12	52	1.39
29936162--29936227	7	9.0	7	78	18	64	37	1	0	60	1.06
29936105--29936408	16	17.5	17	66	21	68	33	4	1	60	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29936156--29936215	23	2.5	25	81	13	81	35	0	0	65	0.93
29936162--29936232	16	4.7	15	78	16	76	35	2	0	61	1.10
29936161--29936225	27	2.3	26	82	15	76	36	1	0	61	1.05
29936240--29936328	28	3.0	28	81	17	76	32	4	2	60	1.29
29936240--29936299	33	1.9	33	83	16	83	30	6	3	60	1.39
29936290--29936330	11	3.5	12	81	15	50	39	0	0	60	0.96
29936562--29936620	22	2.7	23	82	14	72	37	5	0	57	1.21
29936688--29936730	18	2.3	19	80	4	52	32	6	2	58	1.38
29948563--29949320	205	3.7	205	87	3	1078	31	18	21	28	1.97
29950922--29950995	18	3.7	19	74	15	60	32	4	0	63	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153