genome.fa.s18.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  15  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5030395--5030442	17	2.7	18	80	3	53	77	2	18	2	0.97
5031923--5032009	46	1.9	46	81	4	106	28	22	24	24	1.99
5031700--5032140	179	2.5	176	89	2	695	30	22	22	24	1.99
5031986--5032459	132	3.6	132	82	5	568	30	22	22	24	1.99
5032627--5033188	85	6.6	85	85	3	709	29	23	25	20	1.99
5032627--5033185	172	3.3	171	89	2	815	29	23	26	20	1.99
5032456--5033189	87	8.5	85	80	6	666	31	22	23	21	1.98
5033426--5033489	29	2.2	29	86	5	94	31	51	1	15	1.53
5033455--5033526	37	1.9	37	100	0	144	29	52	0	18	1.45
5033508--5033543	18	2.0	18	94	0	63	25	58	0	16	1.38
5033930--5033974	21	2.2	21	80	7	58	42	0	2	55	1.12
5034162--5034212	21	2.4	21	83	0	57	27	11	5	54	1.59
5034426--5034669	126	1.9	126	89	1	382	30	15	14	38	1.88
5043571--5043988	135	3.1	135	82	3	522	26	22	21	29	1.99
5051453--5051910	229	2.0	229	100	0	916	38	8	20	33	1.82
5057265--5057355	46	2.0	46	82	0	110	42	3	30	23	1.70
5059435--5059481	23	2.0	23	95	0	85	55	4	19	21	1.60
5063261--5063329	35	2.0	35	100	0	138	21	23	11	43	1.85
5078284--5078335	26	2.0	26	81	7	61	51	3	0	44	1.19
5099049--5099108	28	2.1	28	87	0	84	31	5	30	33	1.79
5099266--5099342	25	3.1	26	68	24	67	48	2	2	46	1.29
5114277--5114324	24	2.0	24	100	0	96	16	29	12	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5116459--5116615	76	2.1	74	96	3	287	29	13	17	38	1.88
5124848--5124880	6	5.5	6	96	0	57	0	12	48	39	1.40
5125968--5125997	6	5.0	6	100	0	60	33	0	16	50	1.46
5126217--5126250	17	2.0	17	100	0	68	17	5	64	11	1.45
5126816--5126863	6	8.0	6	95	0	60	16	6	58	18	1.59
5130149--5130238	45	2.0	44	95	4	164	42	2	26	28	1.67
5137110--5137225	45	2.6	45	84	0	151	37	17	24	21	1.94
5137211--5137419	46	4.5	46	95	0	364	43	16	22	17	1.87
5140563--5140608	10	4.6	10	86	0	65	69	2	4	23	1.17
5140563--5140608	20	2.3	20	92	0	74	69	2	4	23	1.17
5140571--5140614	20	2.2	20	100	0	88	65	0	9	25	1.21
5140563--5140614	10	5.2	10	83	0	59	67	1	7	23	1.27
5152317--5152344	14	2.0	14	100	0	56	64	0	0	35	0.94
5153604--5153666	30	2.1	30	93	0	108	58	14	3	23	1.50
5154159--5154198	21	1.9	21	89	0	62	40	7	25	27	1.82
5179381--5179421	21	2.0	21	100	0	82	53	19	0	26	1.45
5180969--5181014	23	2.0	23	95	0	83	45	13	15	26	1.82
5193048--5193107	30	2.0	30	96	0	111	48	3	18	30	1.64
5193898--5195525	814	2.0	814	100	0	3256	40	17	17	25	1.90
5195370--5195853	132	3.7	132	86	3	605	34	18	19	27	1.95
5195370--5195855	267	1.8	264	83	3	611	34	18	19	27	1.95
5197309--5197338	15	2.1	15	93	6	53	76	0	10	13	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5202643--5202691	20	2.5	20	89	0	71	30	6	8	55	1.54
5203119--5203187	28	2.5	28	73	15	72	37	2	1	57	1.22
5203155--5203184	14	2.1	14	93	0	51	33	0	0	66	0.92
5203221--5203262	18	2.3	18	83	0	57	57	14	0	28	1.38
5203647--5203700	28	1.9	28	88	7	83	53	5	16	24	1.64
5206254--5206550	149	2.0	149	98	0	576	36	16	18	27	1.93
5208081--5208301	107	2.1	106	95	2	401	38	23	6	30	1.81
5215772--5216002	112	2.1	113	90	0	365	15	28	12	44	1.82
5222769--5222793	2	12.5	2	100	0	50	0	48	0	52	1.00
5224112--5224240	64	2.0	64	96	0	240	24	11	13	51	1.74
5225083--5225125	21	2.0	21	95	0	77	27	0	37	34	1.57
5225106--5225138	16	2.1	16	94	0	57	33	0	36	30	1.58
5225117--5225211	45	2.1	44	88	1	136	34	5	27	32	1.79
5225373--5225407	18	2.0	17	88	5	52	54	0	0	45	0.99
5225331--5225403	27	2.7	27	76	8	76	52	2	0	45	1.15
5225292--5225563	144	1.9	147	94	3	487	46	3	2	47	1.34
5225517--5225551	18	2.0	17	88	5	52	54	0	0	45	0.99
5239441--5239485	21	2.1	21	91	0	72	60	2	0	37	1.09
5258073--5258131	30	2.0	30	83	6	75	49	0	1	49	1.11
5261844--5261870	9	3.0	9	100	0	54	66	0	0	33	0.92
5269163--5269221	18	3.5	18	66	17	54	49	15	1	33	1.55
5270944--5272170	427	2.9	427	96	0	2229	31	22	14	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5274908--5275057	75	2.0	75	93	0	255	36	16	17	29	1.92
5276769--5276860	47	2.0	47	82	4	114	30	19	22	27	1.98
5276857--5276948	44	2.1	44	82	8	107	34	22	20	21	1.96
5277839--5277863	3	8.3	3	100	0	50	68	0	0	32	0.90
5279379--5279403	12	2.1	12	100	0	50	24	8	16	52	1.70
5280367--5280405	17	2.3	16	83	12	51	46	17	0	35	1.49
5286633--5286667	18	1.9	18	94	0	61	25	20	11	42	1.85
5318208--5318243	3	12.0	3	100	0	72	33	0	33	33	1.58
5326106--5326158	26	2.0	26	85	0	70	22	20	22	33	1.97
5330679--5330725	21	2.2	21	92	0	76	2	42	17	38	1.61
5338325--5338371	9	5.1	9	84	5	67	34	0	23	42	1.54
5339577--5339622	24	1.9	24	90	0	74	45	4	4	45	1.43
5341143--5341302	72	2.2	73	84	3	198	26	18	16	37	1.93
5341410--5341477	35	1.9	35	93	0	118	39	2	8	48	1.49
5341798--5341865	7	9.6	7	82	3	73	45	33	1	19	1.59
5341886--5342045	41	3.9	41	82	2	180	20	23	16	39	1.92
5342606--5342648	22	2.0	22	81	9	52	55	9	13	20	1.66
5344597--5344688	46	2.0	46	97	0	175	29	21	11	36	1.89
5348443--5348477	18	1.9	18	88	0	52	54	2	2	40	1.30
5352380--5352405	2	13.0	2	100	0	52	0	50	0	50	1.00
5352874--5352920	7	6.9	7	76	13	53	23	0	4	72	1.02
5353119--5353296	89	2.0	89	80	2	196	35	13	11	39	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5353380--5353434	27	2.2	25	83	9	67	65	1	0	32	1.03
5357945--5357978	18	1.9	17	88	5	50	79	0	20	0	0.73
5367259--5367284	7	3.7	7	100	0	52	42	30	0	26	1.56
5372189--5372225	19	2.0	18	94	0	56	40	5	13	37	1.68
5373151--5373193	21	2.0	21	81	0	50	32	9	32	25	1.88
5373122--5373268	77	1.9	77	97	0	276	31	12	31	24	1.93
5390278--5390382	20	5.2	20	68	11	61	19	8	33	39	1.82
5390310--5390382	21	3.5	21	76	10	60	20	8	32	38	1.82
5391023--5391056	14	2.4	14	90	0	50	35	2	2	58	1.28
5391805--5391856	24	2.1	24	82	13	61	50	0	5	44	1.26
5398927--5398960	16	2.1	17	88	5	52	79	8	2	8	1.03
5399957--5399998	22	1.9	22	90	0	66	28	11	26	33	1.92
5401131--5402295	581	2.0	581	95	1	2102	32	13	21	32	1.92
5404385--5404569	79	2.3	82	83	7	229	24	27	22	24	2.00
5404366--5404569	40	5.1	40	81	8	229	24	27	22	25	2.00
5407747--5407850	41	2.5	41	93	3	174	23	27	21	27	1.99
5420258--5420350	18	5.2	18	90	0	150	31	16	24	27	1.96
5420258--5420350	36	2.6	36	94	0	168	31	16	24	27	1.96
5430136--5430165	4	7.5	4	100	0	60	23	0	76	0	0.78
5434286--5434316	16	1.9	16	93	0	53	83	3	12	0	0.75
5434309--5434569	101	2.5	101	83	7	330	37	15	17	29	1.90
5434627--5434836	108	1.9	110	89	1	325	30	18	13	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5435361--5435552	51	3.8	50	83	3	233	30	27	17	25	1.97
5438530--5438568	18	2.2	17	86	13	53	33	0	20	46	1.51
5438794--5438915	23	5.3	23	83	0	172	23	21	24	30	1.99
5438794--5438915	46	2.7	46	93	0	199	23	21	24	30	1.99
5439787--5439926	71	2.0	71	97	0	262	34	12	15	37	1.85
5440166--5440304	49	2.8	49	95	0	242	25	15	27	32	1.95
5441277--5441403	21	6.1	21	74	3	89	48	18	18	14	1.82
5441296--5441432	42	3.3	42	85	0	193	48	18	16	16	1.82
5451164--5451225	25	2.5	25	75	15	65	22	22	16	38	1.92
5454622--5454666	21	2.1	21	83	0	54	40	26	6	26	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153