genome.fa.s18.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  98  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30956086--30956128	21	2.0	21	100	0	86	23	13	0	62	1.31
30957104--30957149	23	2.0	23	100	0	92	17	4	8	69	1.31
30958788--30958812	13	1.9	13	100	0	50	40	0	20	40	1.52
30961651--30961747	50	1.9	50	89	0	149	16	27	15	40	1.89
30966860--30966893	3	11.3	3	93	0	50	32	0	5	61	1.20
30966986--30967022	17	2.1	18	90	5	58	43	5	5	45	1.49
30978092--30978137	17	2.6	17	86	6	65	54	4	21	17	1.59
30978092--30978137	18	2.5	19	86	6	60	54	4	21	17	1.59
30979436--30979611	49	3.6	49	72	3	156	31	24	20	23	1.98
30979374--30979715	98	3.5	98	80	2	317	31	22	21	24	1.98
30980291--30980317	5	5.4	5	100	0	54	18	0	0	81	0.69
30981102--30981138	3	12.3	3	94	0	65	32	0	2	64	1.07
30981231--30981267	17	2.1	18	90	5	58	43	5	5	45	1.49
30984782--30985217	113	3.9	113	90	1	660	26	19	27	26	1.99
30985128--30985269	72	2.0	72	91	0	230	29	19	25	25	1.99
30985447--30985477	14	2.2	14	94	0	53	29	0	29	41	1.56
30985493--30985521	15	1.9	15	100	0	58	13	0	48	37	1.43
30985344--30985943	276	2.1	287	82	10	712	29	1	26	42	1.66
30985784--30985853	15	4.7	15	78	3	61	21	0	42	35	1.53
30986676--30986700	5	5.0	5	100	0	50	40	20	20	20	1.92
30986461--30986892	158	2.9	151	86	8	569	38	15	14	31	1.88
30990196--30990311	42	2.8	42	89	0	160	21	19	23	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30990369--30990411	22	2.0	22	90	0	68	46	25	16	11	1.80
30991940--30992161	84	2.6	84	100	0	444	39	12	9	38	1.75
31002421--31002555	39	3.4	39	82	2	189	43	21	4	30	1.72
31008051--31008177	27	4.8	27	79	1	87	25	17	16	40	1.90
31008084--31008268	54	3.5	54	80	8	225	21	15	20	42	1.89
31008079--31008234	78	2.0	79	85	5	210	23	16	18	41	1.90
31008084--31008281	27	7.4	27	83	4	204	20	15	20	43	1.88
31023677--31023715	15	2.5	16	83	4	53	43	23	2	30	1.67
31027673--31027988	27	11.7	27	80	5	273	24	20	9	44	1.81
31027669--31027978	81	3.8	81	79	4	322	24	21	10	43	1.83
31056695--31056775	3	27.0	3	80	9	76	62	1	4	30	1.24
31063294--31063344	21	2.4	21	73	0	57	23	15	37	23	1.93
31064692--31064817	62	2.0	62	98	0	243	42	18	13	26	1.87
31065140--31065233	22	4.5	22	74	15	74	39	28	17	14	1.89
31065162--31065255	38	2.5	37	85	1	116	39	28	18	13	1.89
31065173--31065255	37	2.2	38	86	2	114	40	28	18	12	1.86
31068682--31068726	15	3.1	15	83	3	65	48	0	13	37	1.42
31075454--31075484	2	15.5	2	93	0	53	0	3	48	48	1.17
31076491--31076588	26	3.7	26	80	8	126	31	13	25	29	1.93
31076491--31076608	53	2.2	54	87	1	175	35	12	23	27	1.92
31076582--31076636	28	2.0	28	92	0	92	41	7	23	27	1.80
31086679--31086774	48	2.0	48	87	4	140	29	29	19	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31089331--31089531	101	2.0	101	98	0	384	50	11	4	33	1.59
31089641--31089705	11	6.1	11	74	12	64	56	0	43	0	0.99
31089683--31089761	24	3.3	24	77	10	90	67	0	32	0	0.91
31089659--31089730	16	5.2	13	74	22	51	65	0	34	0	0.93
31090271--31090321	13	4.0	13	76	5	50	64	7	1	25	1.31
31090087--31091153	154	7.0	154	80	11	1177	51	7	10	30	1.63
31093931--31094056	43	2.9	42	81	12	148	19	20	29	30	1.97
31094705--31094736	14	2.2	15	94	5	57	21	0	25	53	1.46
31094988--31095155	23	7.2	22	66	20	92	33	10	14	41	1.80
31094988--31095180	47	4.1	47	92	0	323	34	10	14	40	1.80
31095349--31095417	22	3.0	22	78	19	70	30	8	17	43	1.79
31101888--31102013	43	2.9	42	81	12	148	19	20	29	30	1.97
31102660--31102694	15	2.3	15	90	9	54	25	0	22	51	1.48
31102946--31103221	47	5.9	47	98	0	525	34	10	15	40	1.81
31104964--31105029	9	7.2	9	76	10	53	43	25	7	22	1.79
31104972--31105005	17	1.9	18	88	5	52	41	20	11	26	1.87
31104999--31105042	11	4.2	11	82	11	56	54	25	2	18	1.55
31104999--31105040	20	2.1	20	90	0	66	52	26	2	19	1.58
31107537--31107602	27	2.4	27	80	9	73	50	9	6	34	1.59
31107596--31107641	22	2.1	22	84	8	58	58	15	2	23	1.48
31109717--31110173	88	5.0	87	81	9	452	36	20	10	32	1.87
31110549--31110601	20	2.7	20	85	8	65	32	7	3	56	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31110552--31110595	19	2.4	19	85	11	56	29	9	4	56	1.50
31110630--31110670	21	2.0	22	90	9	68	29	7	0	63	1.21
31110768--31110853	29	2.9	31	78	16	85	30	3	2	63	1.23
31110801--31110865	30	2.2	29	81	10	69	36	1	1	60	1.16
31110805--31110867	29	2.2	29	78	13	67	38	1	1	58	1.17
31116578--31116620	21	2.0	23	81	9	54	51	4	9	34	1.55
31118266--31119688	89	16.0	89	87	3	1925	26	23	18	31	1.98
31118266--31119685	714	2.0	712	91	1	2326	26	23	18	31	1.98
31120932--31120978	7	6.6	7	81	13	60	14	17	0	68	1.22
31120941--31120990	21	2.4	22	76	10	59	16	20	0	64	1.30
31121921--31121959	19	2.1	19	90	0	60	66	7	12	12	1.43
31125639--31125681	21	2.0	23	81	9	54	51	4	9	34	1.55
31128516--31128560	17	2.6	16	83	13	54	35	2	6	55	1.38
31133849--31133877	6	4.8	6	100	0	58	34	0	13	51	1.42
31135013--31135047	15	2.3	15	100	0	70	42	0	0	57	0.99
31135180--31135229	20	2.5	20	83	6	66	12	36	16	36	1.85
31135295--31135350	11	5.5	10	76	16	53	67	0	32	0	0.91
31135304--31135348	17	2.8	17	80	12	51	66	0	33	0	0.92
31135602--31135645	21	2.1	21	100	0	88	36	9	9	45	1.68
31136082--31136159	38	2.0	39	92	5	131	28	11	8	51	1.68
31136238--31136419	58	3.2	58	79	8	212	34	13	10	41	1.80
31136673--31136711	16	2.4	16	95	0	69	38	0	2	58	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31139826--31139863	20	1.9	20	88	0	58	52	10	2	34	1.50
31140274--31140390	57	2.1	56	86	1	162	50	11	13	23	1.75
31145313--31145390	26	3.0	26	79	7	86	30	30	28	10	1.90
31148161--31148370	109	1.9	108	88	4	316	32	20	17	29	1.96
31164365--31164404	20	2.0	20	90	0	62	17	5	2	75	1.10
31165145--31165800	328	2.0	324	89	1	1008	33	11	19	36	1.88
31167242--31167270	13	2.1	14	93	6	51	34	0	20	44	1.52
31175773--31175966	105	1.8	105	81	2	237	32	15	25	26	1.96
31178562--31178700	40	3.5	40	71	6	122	26	19	23	30	1.98
31180620--31180735	33	3.6	32	75	12	112	37	1	6	54	1.38
31186381--31186407	5	5.4	5	100	0	54	59	0	0	40	0.98
31186419--31186448	15	2.0	15	100	0	60	40	0	6	53	1.27
31188277--31188315	20	1.9	21	85	15	55	69	5	0	25	1.09
31188985--31189068	28	3.1	27	70	13	66	73	4	1	20	1.08
31189005--31189044	19	2.1	19	90	0	62	87	0	2	10	0.63
31189005--31189044	9	4.3	9	82	17	55	87	0	2	10	0.63
31189566--31189787	122	1.8	123	93	1	383	37	9	17	35	1.83
31197712--31197817	50	2.1	50	83	0	131	29	20	28	21	1.98
31197720--31197843	50	2.5	50	79	0	122	29	24	25	21	1.99
31207321--31207613	50	5.9	50	84	3	322	22	28	20	27	1.99
31211309--31211352	19	2.3	19	84	4	52	63	2	9	25	1.35
31212606--31212715	32	3.5	32	77	1	114	37	20	20	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31212715--31212785	26	2.7	26	91	0	115	35	26	22	15	1.94
31212914--31212989	24	3.2	23	81	5	80	43	27	6	22	1.78
31213001--31213250	27	9.3	27	85	1	313	23	20	20	35	1.96
31220515--31220560	23	2.0	23	95	0	83	15	32	21	30	1.94
31228256--31228305	19	2.5	20	84	12	68	20	8	14	58	1.61
31231125--31231174	15	3.4	15	75	22	52	18	10	8	64	1.48
31235180--31235205	7	3.7	7	100	0	52	15	0	0	84	0.62
31239298--31239322	13	1.9	13	100	0	50	8	0	20	72	1.10
31239494--31239597	52	2.0	52	98	0	199	21	8	14	55	1.65
31245360--31245585	80	2.8	79	83	1	263	40	8	16	34	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153