genome.fa.s18.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  45  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14973861--14973959	50	1.9	52	85	4	139	33	13	13	40	1.83
14973861--14973979	50	2.3	50	82	2	121	32	13	13	40	1.83
14977112--14977160	25	1.9	25	84	12	64	2	36	0	61	1.08
14977288--14977335	23	2.1	23	84	0	60	39	10	6	43	1.64
14977394--14977432	8	4.9	8	96	0	69	58	0	2	38	1.12
14982852--14983054	101	2.0	101	91	0	325	32	12	28	27	1.93
14991940--14992114	43	4.1	43	71	12	128	23	17	18	40	1.91
14993783--14993839	19	3.0	19	76	20	57	66	1	1	29	1.12
14993818--14993859	16	2.6	16	80	0	57	66	0	4	28	1.12
14993955--14993995	19	2.1	19	86	9	55	60	2	2	34	1.23
14996056--14996085	9	3.3	9	90	0	51	36	0	3	60	1.14
14997940--14997981	18	2.3	18	83	0	57	47	11	33	7	1.68
15000821--15000850	9	3.3	9	90	0	51	36	0	3	60	1.14
15002705--15002746	18	2.3	18	83	0	57	47	11	33	7	1.68
15006820--15006855	10	3.7	10	92	7	65	36	0	0	63	0.94
15017589--15017625	20	1.9	20	88	5	58	29	35	18	16	1.93
15034504--15034897	134	3.0	133	82	3	477	31	17	16	34	1.92
15034493--15034908	132	3.1	130	82	4	490	32	17	15	34	1.92
15035029--15035271	130	1.9	129	86	2	344	24	20	20	34	1.97
15036686--15036719	15	2.3	15	100	0	68	41	0	11	47	1.40
15039621--15039651	15	2.1	14	94	5	53	54	6	3	35	1.42
15039638--15039706	21	3.4	20	71	16	70	55	7	1	36	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15047267--15047299	13	2.4	14	85	15	50	0	12	15	72	1.12
15047614--15047644	15	2.1	14	94	5	53	54	6	3	35	1.42
15047631--15047699	21	3.4	20	71	16	70	55	7	1	36	1.37
15056967--15056998	12	2.6	13	85	14	50	46	25	0	28	1.53
15058632--15058668	19	1.9	19	89	10	58	59	2	0	37	1.12
15058880--15058920	21	2.0	21	90	4	66	29	36	17	17	1.92
15068991--15069036	9	5.0	9	89	2	56	30	15	15	39	1.88
15072866--15072916	13	3.9	13	86	0	75	33	25	7	33	1.85
15072866--15072924	26	2.3	25	91	2	91	33	23	8	33	1.85
15076449--15076505	20	3.0	19	76	20	57	57	1	1	38	1.19
15076449--15076505	19	3.0	21	75	17	61	57	1	1	38	1.19
15077600--15077667	27	2.6	26	81	6	93	8	8	4	77	1.10
15090540--15090618	40	2.0	40	85	5	106	39	12	7	40	1.72
15096205--15096286	15	5.7	14	72	22	64	50	1	2	46	1.22
15096198--15096258	7	8.3	7	73	10	50	45	0	1	52	1.10
15098796--15098852	28	2.0	30	86	6	82	26	3	19	50	1.63
15099828--15099870	17	2.5	17	77	7	52	69	2	0	27	1.00
15102073--15102115	5	8.2	5	86	2	50	72	2	25	0	0.97
15105445--15105499	6	9.2	6	91	0	92	16	18	50	14	1.77
15109040--15109175	49	2.7	49	83	2	173	25	20	26	27	1.99
15109035--15109175	51	2.8	51	82	2	178	24	20	27	26	1.99
15110995--15111074	18	4.4	18	87	0	115	37	16	11	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15110995--15111074	36	2.2	36	97	0	151	37	16	11	35	1.84
15111235--15111317	43	1.9	43	90	4	132	31	22	20	25	1.98
15112003--15112043	12	3.5	11	90	6	55	26	17	0	56	1.41
15112701--15112747	25	2.0	22	88	12	67	57	0	2	40	1.11
15116383--15116573	89	2.1	88	83	10	228	37	20	8	32	1.84
15116671--15116715	16	2.8	17	86	10	67	75	0	0	24	0.80
15116671--15116754	10	9.6	9	69	23	54	70	0	0	29	0.88
15116687--15116754	27	2.5	27	81	9	86	67	0	0	32	0.91
15116818--15116907	42	2.2	41	82	7	103	61	4	6	27	1.41
15117117--15117176	15	3.9	16	71	20	56	21	1	1	75	0.99
15117164--15117217	19	2.8	19	81	13	58	31	0	5	62	1.18
15117119--15117231	9	12.6	9	69	14	63	25	0	3	69	1.10
15120171--15120263	46	2.0	46	100	0	186	34	26	19	19	1.96
15123012--15123100	24	3.7	24	78	3	97	28	29	16	25	1.97
15126681--15126771	41	2.2	42	84	5	114	20	29	24	25	1.99
15141821--15141896	40	1.9	40	97	0	143	34	14	11	39	1.83
15144998--15145039	19	2.2	19	83	12	50	47	0	2	50	1.14
15145879--15146028	74	2.1	71	88	5	221	34	4	5	55	1.43
15146412--15146475	33	1.9	33	93	6	112	50	15	9	25	1.74
15150967--15151005	21	2.0	20	85	10	53	56	2	2	38	1.27
15151074--15151114	20	2.0	20	95	0	73	48	9	12	29	1.72
15151820--15151850	13	2.3	14	94	5	55	48	6	3	41	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15151868--15151907	14	2.9	15	85	11	50	32	0	0	67	0.91
15155066--15155103	7	5.4	7	90	0	58	18	0	39	42	1.50
15155140--15155171	15	2.1	15	94	0	55	65	0	6	28	1.16
15157549--15157624	39	1.9	39	97	0	143	23	9	15	51	1.72
15159771--15159874	26	4.0	26	93	0	181	35	24	7	32	1.84
15161934--15162067	65	2.1	65	98	0	259	35	13	18	32	1.90
15170513--15170563	25	2.0	25	88	0	75	41	5	15	37	1.72
15171230--15172198	486	2.0	487	99	0	1904	35	19	21	23	1.96
15171921--15172949	514	2.0	514	97	0	1959	35	17	21	24	1.95
15173718--15173768	25	2.0	25	92	0	84	39	5	17	37	1.74
15173721--15173768	12	3.9	12	75	5	51	39	4	18	37	1.70
15177911--15178052	75	1.9	74	85	7	198	22	9	14	54	1.68
15186153--15186193	20	2.0	20	85	4	55	60	4	4	29	1.38
15194791--15194898	26	4.2	26	93	0	189	36	24	7	32	1.83
15196899--15196956	29	2.0	29	96	0	107	24	20	15	39	1.91
15197350--15197397	20	2.4	20	75	0	51	31	6	37	25	1.81
15198406--15198445	9	4.4	9	84	12	55	20	0	2	77	0.88
15205879--15205934	26	2.2	26	100	0	112	48	14	7	30	1.70
15218214--15218321	26	4.2	26	91	0	180	32	7	23	37	1.82
15219943--15220047	27	3.9	27	86	9	135	19	24	21	34	1.96
15236516--15236554	18	2.2	19	86	9	55	23	25	30	20	1.98
15242643--15242668	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15245543--15245672	42	3.1	43	81	6	131	26	13	26	33	1.94
15246252--15246290	20	1.9	20	84	5	51	25	2	17	53	1.56
15248628--15248749	42	3.0	41	76	9	140	16	24	18	40	1.91
15248638--15248778	42	3.4	41	75	15	121	17	24	19	38	1.93
15256539--15256646	26	4.2	26	87	2	155	37	23	7	32	1.82
15256539--15256646	52	2.1	52	91	0	171	37	23	7	32	1.82
15258122--15258195	37	2.0	37	100	0	148	48	8	16	27	1.74
15260912--15261066	37	4.2	37	86	6	183	19	10	28	41	1.84
15268873--15268905	11	3.0	11	83	16	50	81	0	0	18	0.68
15268874--15268903	16	1.9	16	93	6	53	83	0	0	16	0.65
15269101--15269147	23	2.0	23	87	8	67	27	8	27	36	1.86
15270410--15270463	11	4.9	11	79	6	56	61	29	7	1	1.34
15270625--15270655	9	3.4	9	95	0	53	16	41	9	32	1.80
15275766--15275879	57	2.0	57	100	0	228	19	3	19	57	1.54
15280836--15280870	6	5.8	6	100	0	70	0	17	0	82	0.66
15281185--15281379	96	2.0	97	83	3	241	32	16	14	35	1.90
15287321--15287872	53	10.3	53	81	4	576	38	19	10	30	1.86
15287321--15287836	214	2.4	214	90	1	786	39	19	10	30	1.86
15287321--15287872	27	20.6	27	81	5	541	38	19	10	30	1.86
15287864--15288322	27	17.0	27	91	0	684	35	17	21	25	1.95
15288948--15289035	26	3.4	26	82	4	106	19	21	18	40	1.91
15288963--15289035	27	2.8	26	81	4	92	21	23	16	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15289153--15289240	6	14.3	6	72	17	65	19	19	13	47	1.82
15289156--15289219	25	2.6	25	92	0	101	18	21	14	45	1.85
15295412--15295449	21	1.9	19	85	15	51	26	0	13	60	1.33
15297570--15297611	21	2.0	21	100	0	84	42	23	14	19	1.87
15303683--15303723	19	2.1	20	86	4	57	68	2	0	29	1.03
15303972--15304021	26	1.9	26	84	8	66	30	4	4	62	1.32
15309572--15309610	2	19.5	2	100	0	78	51	48	0	0	1.00
15320801--15320844	8	5.6	8	84	10	56	52	25	15	6	1.68
15321055--15321179	29	4.3	29	81	3	128	26	12	30	30	1.93
15328034--15328076	21	2.1	20	86	4	59	32	2	20	44	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153