genome.fa.s18.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  107  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33306487--33306816	87	3.7	87	80	11	357	37	19	9	33	1.84
33306965--33307037	30	2.5	30	80	10	87	58	0	5	35	1.21
33307051--33307093	20	2.2	20	86	0	59	67	0	6	25	1.15
33307078--33307120	10	4.3	10	84	0	59	65	0	4	30	1.13
33307210--33307244	11	3.1	11	91	4	52	25	5	0	68	1.11
33307400--33307442	21	2.0	21	86	4	59	32	2	2	62	1.20
33307383--33307491	57	1.9	55	82	15	134	31	2	2	63	1.23
33307440--33307511	30	2.4	29	78	17	69	29	4	4	62	1.32
33307649--33307889	89	2.7	86	79	9	268	31	10	21	36	1.87
33307914--33307960	19	2.4	18	83	13	58	27	0	4	68	1.08
33307914--33307969	20	2.9	18	77	15	58	28	0	3	67	1.07
33309845--33310101	46	5.6	46	82	5	274	18	20	15	45	1.85
33315126--33315363	28	8.5	28	93	0	388	26	12	27	33	1.93
33325872--33325926	18	2.9	18	76	15	58	30	5	0	63	1.17
33325872--33325926	19	2.8	20	75	8	60	30	5	0	63	1.17
33326102--33326135	17	2.0	17	88	0	50	55	5	2	35	1.39
33340856--33341198	174	2.0	174	99	0	677	42	10	15	31	1.81
33343994--33344041	24	2.0	24	91	0	78	43	10	27	18	1.82
33344169--33344221	21	2.7	20	80	8	63	9	22	24	43	1.83
33347002--33347027	12	2.2	12	100	0	52	73	11	0	15	1.11
33360885--33360961	22	3.4	22	67	19	68	35	2	25	36	1.70
33360880--33360974	46	2.1	46	100	0	190	33	2	23	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33365462--33365538	22	3.4	22	65	19	59	36	2	24	36	1.70
33365457--33365551	46	2.1	46	97	0	181	34	2	22	41	1.66
33370420--33370462	13	3.2	13	86	6	50	39	2	2	55	1.25
33370415--33370479	15	4.2	15	82	7	67	44	1	1	52	1.19
33370501--33370586	10	9.1	9	71	13	66	34	1	4	59	1.26
33370501--33370566	27	2.3	29	87	7	91	31	1	4	62	1.25
33384619--33384678	25	2.4	25	91	0	93	21	23	25	30	1.99
33384752--33384809	26	2.2	26	85	11	75	48	3	20	27	1.66
33390293--33390372	25	3.2	24	75	16	74	28	17	27	26	1.98
33390319--33390524	25	8.2	26	75	9	153	32	17	28	20	1.96
33406233--33406339	27	4.0	27	74	7	92	42	17	15	23	1.88
33407802--33407885	40	2.1	40	82	6	100	38	0	0	61	0.96
33408562--33408596	13	2.7	13	86	0	52	68	2	8	20	1.29
33416060--33416103	19	2.3	19	100	0	88	43	4	25	27	1.74
33419018--33419188	80	2.1	81	85	3	229	40	19	19	20	1.92
33419018--33419188	27	6.4	27	84	2	211	40	19	19	20	1.92
33423077--33423207	30	4.3	31	75	13	103	38	3	17	41	1.65
33437109--33437138	10	3.0	10	90	0	51	30	26	0	43	1.55
33444997--33445031	14	2.4	15	85	4	54	37	0	20	42	1.52
33453239--33453269	16	1.9	16	93	0	53	74	3	0	22	0.96
33453724--33453762	8	5.2	8	82	17	57	69	0	0	30	0.89
33453723--33453762	21	1.9	21	100	0	80	70	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33453732--33453756	13	1.9	13	100	0	50	76	0	0	24	0.80
33453723--33453775	19	2.7	20	80	11	65	69	0	1	28	0.99
33453715--33453779	30	2.2	28	86	5	85	69	1	1	27	1.07
33460819--33460868	26	1.9	26	83	0	64	52	4	14	30	1.59
33462266--33462320	16	3.1	18	80	10	69	32	21	16	29	1.95
33462512--33462555	18	2.4	18	92	0	70	43	15	15	25	1.87
33465332--33465381	9	6.0	9	84	11	63	30	0	2	68	1.01
33465329--33465380	26	2.1	26	89	7	81	26	0	3	69	1.06
33465336--33465381	17	2.9	16	87	6	67	28	0	2	69	1.00
33465716--33465764	25	1.9	26	87	4	73	40	8	8	42	1.64
33467002--33467051	9	6.0	9	84	11	63	30	0	2	68	1.01
33466999--33467050	26	2.1	26	89	7	81	26	0	3	69	1.06
33467006--33467051	17	2.9	16	87	6	67	28	0	2	69	1.00
33467386--33467434	25	1.9	26	87	4	73	40	8	8	42	1.64
33471048--33471119	19	3.7	19	90	7	117	34	11	16	37	1.84
33476777--33476811	6	6.0	6	93	3	54	82	2	14	0	0.77
33478110--33478245	43	3.1	43	69	8	130	25	22	27	24	1.99
33478053--33478247	88	2.2	88	89	1	293	26	22	28	23	1.99
33483641--33484063	88	4.8	88	91	0	657	25	23	25	25	2.00
33484067--33484450	44	8.7	44	84	4	461	31	14	24	30	1.94
33483670--33484481	264	3.1	263	80	2	727	28	19	25	27	1.98
33484067--33484478	89	4.7	89	81	5	451	31	14	24	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33484065--33484471	133	3.1	133	90	1	631	30	14	25	29	1.95
33484071--33484496	175	2.4	177	85	2	473	30	15	23	30	1.95
33489991--33490018	14	2.0	14	100	0	56	14	14	28	42	1.84
33493694--33493752	31	2.0	29	83	6	73	25	3	11	59	1.48
33496961--33497017	24	2.4	24	84	0	87	36	15	15	31	1.90
33499560--33499709	45	3.4	45	82	3	187	23	24	20	31	1.98
33502186--33502219	4	8.0	4	90	9	50	23	0	2	73	0.97
33502169--33502228	22	2.7	22	73	19	61	26	0	6	66	1.16
33507994--33508034	23	1.9	22	85	14	59	53	4	2	39	1.35
33507983--33508008	3	8.7	3	100	0	52	69	0	0	30	0.89
33508750--33508817	31	2.2	31	84	5	93	32	13	13	41	1.83
33519000--33519283	57	5.1	57	90	4	402	30	18	7	43	1.77
33523026--33523064	19	2.0	21	90	10	64	66	5	10	17	1.39
33524597--33524645	24	2.0	24	84	0	62	14	26	0	59	1.36
33526266--33526340	26	2.9	26	89	0	87	44	18	16	21	1.87
33526485--33526584	27	3.7	27	80	7	123	22	13	21	44	1.86
33526498--33526584	27	3.3	27	85	6	124	19	14	19	45	1.85
33539401--33539445	18	2.5	18	85	0	54	37	13	20	28	1.90
33554661--33554756	27	3.6	27	77	5	104	18	26	16	38	1.92
33554770--33554943	45	3.9	45	85	1	215	24	20	13	40	1.89
33558277--33558307	15	2.1	15	100	0	62	32	6	12	48	1.67
33562363--33562412	22	2.3	21	86	6	64	52	2	6	40	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33562493--33562532	21	1.9	21	84	0	53	37	7	5	50	1.53
33565677--33565918	50	4.7	49	84	6	277	26	21	29	23	1.99
33568798--33568860	32	1.9	33	87	3	92	30	0	3	66	1.07
33568798--33568848	18	3.1	17	81	18	63	33	0	3	62	1.13
33580079--33580197	47	2.5	47	84	0	157	27	30	8	33	1.86
33580422--33580513	39	2.3	39	88	5	132	25	28	22	23	2.00
33580403--33580563	40	4.1	40	79	10	170	24	27	22	25	2.00
33584121--33584303	40	4.6	40	78	4	174	24	26	22	26	2.00
33584108--33584257	80	1.9	80	84	2	203	24	26	21	27	1.99
33584615--33584693	29	2.7	29	86	5	106	27	32	15	24	1.95
33584675--33584777	43	2.4	43	98	0	197	26	34	15	23	1.94
33588188--33588233	21	2.3	20	78	14	51	45	17	4	32	1.68
33588610--33588655	21	2.3	20	78	14	51	45	17	4	32	1.68
33588035--33588878	422	2.0	422	97	0	1580	38	19	11	30	1.87
33592431--33592473	13	3.5	12	82	14	52	25	6	2	65	1.30
33596829--33597148	27	11.9	27	83	5	339	20	17	19	42	1.90
33598627--33598801	89	2.0	88	87	5	255	40	18	14	25	1.89
33603202--33603265	31	2.1	31	87	0	92	42	18	17	21	1.89
33603235--33603434	81	2.5	81	89	4	305	44	19	16	20	1.87
33603234--33603447	27	7.9	27	83	8	238	42	20	15	21	1.88
33603203--33603436	54	4.3	54	84	6	276	43	19	17	20	1.89
33606916--33607001	31	2.9	30	79	5	93	40	15	11	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33608033--33608073	19	2.2	19	90	0	64	34	4	7	53	1.50
33623571--33623595	12	2.1	12	100	0	50	16	24	36	24	1.94
33651721--33651764	6	7.0	6	80	10	52	75	0	0	25	0.81
33651722--33651766	20	2.3	19	88	7	72	75	0	0	24	0.80
33653175--33653239	29	2.2	30	86	5	87	46	0	3	50	1.17
33654172--33654230	31	1.9	31	89	0	91	54	10	15	20	1.70
33663199--33663229	16	1.9	16	93	0	53	6	12	3	77	1.08
33663367--33663434	34	2.0	35	91	2	111	22	30	23	23	1.99
33665650--33665777	64	2.0	64	84	0	166	34	22	19	23	1.97
33670455--33670676	50	4.3	50	78	10	189	21	28	22	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153