genome.fa.s18.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  46  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15338502--15338540	21	1.9	20	94	5	69	30	0	23	46	1.53
15338502--15338548	21	2.3	21	85	10	62	31	2	21	44	1.64
15340871--15340945	38	2.0	38	94	0	132	22	17	24	36	1.95
15355219--15355892	70	9.6	70	75	6	427	27	15	22	34	1.94
15355410--15355543	69	1.9	70	84	4	182	25	19	25	29	1.98
15355296--15355892	209	2.9	209	78	7	546	27	15	22	34	1.94
15363266--15363352	32	2.8	32	86	5	117	63	0	34	2	1.07
15363297--15363354	10	5.6	10	78	8	62	65	0	34	0	0.93
15363289--15363367	32	2.3	32	82	10	95	67	0	32	0	0.91
15363626--15363656	16	1.9	16	93	0	53	22	3	12	61	1.46
15364994--15365144	28	5.4	28	94	0	248	50	7	10	31	1.66
15368405--15368448	15	2.9	16	80	13	56	70	4	9	15	1.30
15368559--15368830	142	1.9	141	96	0	499	33	15	11	40	1.82
15373356--15373398	21	2.0	22	90	4	70	39	0	2	58	1.11
15374712--15374750	20	2.0	20	84	0	51	41	20	10	28	1.85
15375873--15375910	13	2.9	13	92	0	58	42	13	5	39	1.66
15382886--15382948	31	2.0	31	87	6	92	26	3	22	47	1.66
15383106--15383159	13	4.5	13	75	25	57	62	1	0	35	1.06
15383103--15383159	23	2.4	23	78	16	64	61	1	0	36	1.07
15383103--15383170	24	3.0	23	73	18	61	58	1	0	39	1.07
15387613--15387653	21	2.0	21	90	0	64	29	21	29	19	1.98
15389559--15389592	16	2.1	16	88	0	50	50	14	17	17	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15391453--15391525	9	7.9	9	71	17	60	69	4	1	24	1.13
15395073--15395150	24	3.0	26	90	7	115	42	3	12	41	1.61
15399601--15399631	15	2.1	15	93	0	53	64	3	0	32	1.09
15400286--15400330	24	1.9	23	81	4	54	44	8	4	42	1.56
15404055--15404084	15	2.0	15	93	0	51	16	0	36	46	1.47
15403875--15404121	96	2.5	96	82	13	279	40	1	17	40	1.60
15404166--15404689	126	4.2	126	89	3	788	33	17	21	26	1.96
15407723--15408018	55	5.2	55	68	20	203	46	8	3	41	1.51
15407708--15408093	54	6.6	60	67	22	207	46	8	3	40	1.53
15407711--15408093	116	3.3	116	94	0	667	46	8	3	40	1.53
15410251--15410281	15	2.1	15	93	0	53	70	0	6	22	1.09
15410308--15410359	11	4.9	11	88	9	81	42	0	28	28	1.56
15410324--15410371	9	4.9	9	79	18	51	47	0	22	29	1.51
15410309--15410365	11	5.4	11	73	26	52	42	0	28	29	1.56
15410308--15410365	20	2.7	21	89	10	91	41	0	27	31	1.56
15410308--15410371	31	2.1	31	88	5	94	43	0	25	31	1.55
15412050--15412130	40	2.0	40	95	4	146	33	29	12	24	1.92
15412090--15412284	96	2.0	95	89	1	291	31	27	11	29	1.91
15436122--15436207	43	2.0	43	88	0	127	41	10	20	26	1.85
15437899--15437962	31	2.0	32	87	3	94	48	14	17	20	1.81
15443191--15443242	25	2.1	25	85	7	70	34	7	15	42	1.75
15444736--15444799	16	3.9	17	71	6	60	75	0	23	1	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15444733--15444801	6	11.3	6	73	17	54	73	0	24	1	0.91
15444732--15444803	23	3.0	22	73	22	74	70	0	27	1	0.95
15452284--15452310	11	2.5	11	100	0	54	22	7	18	51	1.70
15453711--15453905	93	2.1	92	88	4	286	44	4	4	47	1.41
15453883--15453981	52	2.0	52	80	11	118	45	6	2	46	1.39
15453938--15453971	17	2.0	17	94	0	59	44	5	0	50	1.26
15453943--15453990	17	3.0	16	79	17	55	45	6	2	45	1.40
15454031--15454065	18	2.0	17	88	5	52	45	0	0	54	0.99
15454031--15454072	17	2.5	17	85	14	52	45	0	0	54	0.99
15454011--15454289	143	1.9	143	88	4	380	47	2	3	46	1.34
15454050--15454288	77	3.2	77	64	18	178	46	3	3	46	1.35
15454174--15454208	18	2.0	17	88	5	52	45	0	0	54	0.99
15454370--15454464	45	2.1	45	88	1	138	32	27	5	34	1.79
15454443--15454475	16	2.1	16	94	0	57	30	36	0	33	1.58
15459599--15459636	19	2.1	17	90	9	58	65	2	7	23	1.32
15462974--15463003	2	15.0	2	100	0	60	50	0	0	50	1.00
15463450--15463496	19	2.5	20	75	10	53	38	2	2	57	1.23
15467452--15467498	24	2.0	24	83	8	60	53	4	2	40	1.32
15468001--15468079	39	2.0	39	92	0	131	24	26	5	44	1.74
15468096--15468139	22	1.9	22	86	9	61	52	11	0	36	1.38
15468580--15468604	13	1.9	13	100	0	50	0	8	4	88	0.64
15469513--15470151	44	14.5	44	83	4	745	23	31	16	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15480428--15480474	24	2.0	24	83	8	60	53	4	2	40	1.32
15480977--15481055	39	2.0	39	95	0	140	24	27	5	43	1.75
15482628--15482673	22	2.0	23	83	4	58	65	10	2	21	1.35
15483927--15483978	26	2.0	26	84	0	68	28	9	3	57	1.48
15484491--15484931	206	2.1	206	99	0	873	27	17	21	34	1.95
15496115--15496437	45	7.2	45	68	12	137	30	17	22	29	1.96
15496115--15496538	90	4.7	89	71	12	303	31	16	22	29	1.96
15496188--15496266	41	1.9	41	84	0	104	31	16	21	30	1.95
15496153--15496584	135	3.2	135	70	11	416	31	17	21	28	1.96
15496020--15496402	88	4.3	88	67	12	242	29	17	24	28	1.97
15495963--15496435	133	3.5	131	72	11	438	28	17	24	29	1.97
15495961--15496589	268	2.3	268	91	0	1017	30	17	23	28	1.97
15496544--15496718	89	2.0	89	91	2	289	34	22	18	24	1.96
15496544--15496755	89	2.4	89	84	4	259	33	22	18	25	1.96
15498669--15498717	11	4.5	11	80	14	57	34	0	4	61	1.15
15498651--15498750	14	7.2	14	67	19	59	36	3	2	59	1.24
15498705--15498785	25	3.4	25	68	25	68	35	6	3	54	1.43
15498683--15498785	45	2.2	47	79	14	108	35	4	2	56	1.36
15498855--15498906	26	2.0	26	84	0	68	28	9	3	57	1.48
15504610--15504645	17	2.2	16	90	5	54	41	2	2	52	1.30
15505041--15505079	17	2.4	17	82	4	53	76	5	2	15	1.06
15508203--15508272	37	1.9	36	88	8	106	41	0	2	55	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15508349--15508398	23	2.1	24	85	3	66	44	2	2	52	1.24
15510869--15511078	33	6.4	33	78	2	199	29	22	11	36	1.90
15510898--15511078	65	2.8	64	77	7	202	31	20	11	35	1.89
15511071--15511191	29	4.4	29	78	14	148	24	28	12	34	1.92
15511081--15511184	51	2.0	51	90	0	163	25	26	14	33	1.94
15512637--15512706	21	3.3	21	85	0	77	41	21	11	25	1.86
15522737--15522835	17	5.6	17	88	7	144	38	12	13	36	1.81
15522729--15522835	35	3.0	35	95	4	187	38	11	14	36	1.81
15522737--15522835	18	5.6	18	90	4	157	38	12	13	36	1.81
15523320--15523379	17	3.5	17	74	21	63	33	1	0	65	1.03
15523321--15523379	16	3.5	16	76	23	59	33	1	0	64	1.04
15523356--15523405	26	1.9	26	83	0	64	36	4	0	60	1.16
15526405--15526463	27	2.3	25	77	8	64	69	0	25	5	1.09
15526670--15526755	40	2.2	40	82	0	100	65	8	2	24	1.32
15526749--15526807	28	2.1	29	87	3	84	62	0	6	30	1.21
15540421--15540491	32	2.3	30	77	15	74	40	7	0	52	1.29
15544241--15544335	46	2.0	47	84	6	122	50	1	3	45	1.24
15546617--15546708	38	2.4	37	85	3	121	34	9	18	36	1.84
15549758--15549964	103	2.0	103	97	0	387	31	14	22	30	1.94
15551295--15551463	85	2.0	86	84	3	225	31	21	19	26	1.97
15553453--15553564	38	2.9	38	85	0	134	29	11	20	38	1.88
15574966--15575096	46	2.8	47	78	14	155	21	20	29	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15606139--15606182	23	1.9	23	86	9	63	45	13	2	38	1.56
15609702--15609753	23	2.4	22	87	6	70	38	19	5	36	1.76
15611971--15612035	29	2.3	30	92	7	109	32	10	6	50	1.62
15621733--15621773	21	2.0	20	85	4	55	17	7	34	41	1.77
15622263--15622335	28	2.6	26	80	16	83	26	1	2	69	1.09
15622280--15622338	20	2.9	20	82	7	57	30	1	1	66	1.12
15626987--15627021	3	11.7	3	100	0	70	34	0	0	65	0.93
15632423--15632467	23	2.0	23	95	0	81	20	17	22	40	1.92
15633178--15633315	66	2.1	65	85	4	179	37	7	8	45	1.64
15642277--15642311	12	2.9	12	100	0	70	34	22	0	42	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153