genome.fa.s18.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  132  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41452806--41453306	265	1.9	264	98	0	975	23	19	18	38	1.94
41453405--41453479	33	2.2	34	90	2	116	42	12	6	38	1.68
41457363--41457410	14	3.5	13	74	20	53	68	6	16	8	1.35
41458314--41458388	12	6.2	12	70	11	64	70	4	14	10	1.29
41458375--41458431	27	2.2	26	84	6	71	61	0	24	14	1.33
41458357--41458467	45	2.4	45	80	7	118	61	0	23	14	1.39
41458370--41458467	39	2.5	39	71	3	90	59	0	24	16	1.37
41464311--41464413	50	2.1	50	98	0	197	21	16	27	34	1.95
41464823--41464926	50	2.1	50	98	0	199	24	11	20	44	1.84
41467128--41467333	28	7.4	28	92	2	299	34	27	11	26	1.91
41467128--41467333	55	3.7	56	90	2	308	34	27	11	26	1.91
41467128--41467308	83	2.2	83	91	2	292	34	27	11	26	1.91
41468973--41469062	46	2.0	46	97	0	171	24	28	20	26	1.99
41469232--41469283	25	2.1	25	85	0	68	46	19	3	30	1.68
41474739--41474778	21	1.9	21	89	0	62	32	20	45	2	1.64
41475259--41475549	85	3.4	84	85	7	369	25	24	20	29	1.99
41475259--41475549	42	6.9	43	87	5	375	25	24	20	29	1.99
41475264--41475554	128	2.3	125	85	6	383	24	24	20	30	1.99
41475710--41475750	21	2.0	21	90	0	64	53	9	4	31	1.55
41485767--41485823	26	2.2	26	100	0	114	49	15	21	14	1.80
41485767--41485839	26	2.8	26	91	2	92	49	15	19	16	1.80
41485637--41485812	95	1.9	93	95	1	300	48	18	13	18	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41489933--41489962	13	2.2	14	94	5	53	80	0	0	20	0.72
41490691--41490739	25	2.0	25	83	0	62	38	0	16	44	1.48
41495269--41495327	14	3.7	15	70	25	50	49	1	0	49	1.11
41495267--41495341	34	2.2	34	95	2	132	50	2	0	46	1.15
41496673--41496710	19	2.1	17	90	9	58	31	0	5	63	1.17
41497129--41497163	16	2.2	16	90	5	54	42	5	0	51	1.25
41497595--41497632	19	2.0	19	90	10	60	39	2	5	52	1.38
41498048--41498078	16	2.0	16	93	6	55	58	6	6	29	1.48
41500607--41500639	6	5.5	6	100	0	66	15	33	0	51	1.43
41500965--41501011	5	9.2	5	80	13	51	36	14	25	23	1.93
41509213--41509267	9	6.1	9	86	0	83	29	9	14	47	1.75
41509213--41509267	18	3.1	18	91	0	92	29	9	14	47	1.75
41509321--41509351	9	3.4	9	90	0	53	38	22	12	25	1.90
41512125--41512160	18	2.0	18	88	0	54	8	13	8	69	1.36
41513545--41513614	36	1.9	37	88	2	106	8	27	14	50	1.72
41518757--41518843	28	3.1	28	69	17	74	43	1	2	52	1.21
41518830--41519040	66	3.4	63	68	22	176	42	2	5	49	1.41
41518792--41519084	120	2.4	120	90	3	457	44	2	4	48	1.38
41518913--41518947	18	2.0	17	88	5	52	45	0	0	54	0.99
41519046--41519078	15	2.3	15	89	5	50	57	0	0	42	0.98
41519800--41519880	11	7.4	11	77	0	54	14	4	13	66	1.40
41519952--41520003	26	2.0	26	85	10	72	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41519964--41519995	15	2.0	17	88	11	50	50	0	0	50	1.00
41522063--41522120	28	2.1	28	93	0	98	39	5	18	36	1.74
41525282--41525737	151	3.0	150	93	0	761	33	13	22	30	1.92
41528046--41528083	15	2.7	14	88	8	51	57	7	0	34	1.28
41560068--41560115	11	4.0	11	78	19	51	27	2	4	66	1.21
41560403--41560794	79	4.7	82	80	8	352	31	15	14	39	1.87
41560395--41560618	88	2.5	87	86	2	313	31	14	14	38	1.87
41560824--41561230	84	4.9	83	82	8	431	31	11	12	44	1.78
41560721--41561230	249	2.1	246	78	12	519	31	12	12	43	1.80
41560824--41561230	165	2.4	166	83	9	492	31	11	12	44	1.78
41560834--41561291	84	5.6	79	80	10	319	30	12	12	44	1.79
41561246--41561358	59	1.9	60	83	1	147	23	8	14	53	1.69
41561732--41561802	16	4.7	16	73	18	71	36	0	0	63	0.95
41561745--41561802	27	2.1	27	96	0	107	36	0	0	63	0.94
41561788--41561820	13	2.4	14	90	5	50	33	0	3	63	1.10
41570751--41570782	2	16.0	2	100	0	64	0	50	0	50	1.00
41574814--41575053	26	9.2	26	82	0	257	35	27	16	21	1.95
41577235--41577411	42	4.4	42	78	13	192	22	15	27	35	1.94
41577277--41577451	76	2.3	75	90	1	260	22	18	25	33	1.97
41579731--41579781	22	2.3	22	75	0	57	54	7	3	33	1.47
41580147--41580172	10	2.6	10	100	0	52	61	0	0	38	0.96
41586931--41586958	14	2.0	14	100	0	56	57	0	7	35	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41590224--41590637	106	3.9	107	88	3	627	36	17	14	30	1.90
41590678--41590717	21	1.9	21	90	10	64	52	2	15	30	1.55
41590731--41590774	15	2.9	15	82	3	52	81	6	4	6	0.97
41591036--41591079	3	14.3	3	90	4	70	63	2	2	31	1.19
41591731--41591756	12	2.2	12	100	0	52	7	7	7	76	1.15
41605827--41605913	28	3.1	28	88	0	120	36	24	24	14	1.93
41617142--41617174	16	2.0	17	88	5	50	39	9	0	51	1.34
41618434--41618496	24	2.6	25	80	7	69	20	19	11	49	1.78
41631520--41631783	143	1.9	138	82	6	329	49	6	14	30	1.67
41632040--41632075	14	2.6	14	100	0	72	75	0	5	19	1.00
41637955--41637992	17	2.2	17	86	9	51	63	0	2	34	1.09
41639974--41640043	34	2.1	32	82	10	79	22	7	5	64	1.40
41649743--41649858	46	2.6	46	90	4	175	31	14	24	29	1.95
41658162--41658219	29	2.0	28	86	3	80	32	1	22	43	1.64
41661784--41661815	15	2.1	16	94	5	57	84	0	12	3	0.74
41664687--41664721	18	2.0	17	88	5	52	77	8	14	0	0.99
41664744--41664785	7	6.0	7	100	0	84	42	0	42	14	1.45
41677612--41678077	234	2.0	234	93	1	801	36	18	18	27	1.94
41678289--41678394	40	2.7	40	83	2	133	24	27	25	22	2.00
41687106--41687169	10	5.7	10	76	16	56	3	18	3	75	1.08
41687094--41687165	17	4.1	18	78	16	62	4	19	2	73	1.12
41690630--41690776	76	1.9	76	91	0	240	44	25	10	19	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41701297--41701322	6	4.3	6	100	0	52	19	0	0	80	0.71
41702438--41702516	33	2.3	35	82	6	90	45	1	2	50	1.23
41722660--41722882	40	5.6	40	86	3	245	24	20	27	26	1.99
41722735--41722917	79	2.3	80	82	1	226	25	20	27	25	1.99
41724918--41725002	30	2.9	29	75	5	82	21	22	16	40	1.91
41724979--41725079	29	3.5	29	87	0	148	21	25	11	40	1.88
41724977--41725104	29	4.4	29	84	3	143	20	25	14	39	1.90
41726758--41726787	15	2.0	15	100	0	60	73	6	6	13	1.24
41731725--41731756	11	2.8	11	95	4	55	62	0	3	34	1.11
41733223--41733752	223	2.4	222	83	4	670	26	22	19	30	1.98
41733177--41733798	45	13.9	44	71	11	295	26	22	19	30	1.98
41734072--41734127	24	2.3	24	96	0	103	30	25	12	32	1.92
41736057--41736114	18	3.2	18	80	11	57	6	17	0	75	1.01
41737986--41738022	4	9.2	4	93	0	65	24	2	24	48	1.64
41738274--41738323	24	2.1	23	82	10	57	60	8	2	30	1.37
41738340--41738388	23	2.1	24	84	3	64	53	6	4	36	1.45
41751161--41751288	46	2.7	48	79	7	154	27	20	28	24	1.99
41759848--41760016	27	6.2	27	84	4	196	30	26	15	27	1.96
41759860--41760015	82	1.9	81	88	3	233	29	28	15	26	1.96
41763199--41763233	10	3.5	10	92	0	61	51	22	0	25	1.48
41765094--41765187	25	3.9	24	75	6	91	34	20	25	20	1.96
41765077--41765187	25	4.6	24	73	8	84	34	18	25	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41765166--41765230	26	2.5	26	80	7	69	44	20	15	20	1.86
41773336--41773402	33	2.0	33	88	11	102	34	23	7	34	1.83
41776988--41777029	21	2.0	21	90	0	66	33	9	14	42	1.78
41780162--41780249	16	5.7	16	68	17	60	48	3	1	46	1.26
41780159--41780217	29	2.0	29	100	0	118	44	5	0	50	1.24
41783510--41783541	16	1.9	17	93	6	57	75	12	0	12	1.06
41791839--41791890	16	3.2	16	75	5	52	15	17	3	63	1.45
41793948--41793977	16	1.9	16	93	6	53	50	20	0	30	1.49
41800158--41800187	16	1.9	16	93	6	53	50	20	0	30	1.49
41806937--41807189	44	5.9	42	68	15	135	30	24	16	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153