genome.fa.s18.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  136  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42796668--42796930	120	2.2	119	82	4	307	25	27	21	25	1.99
42796862--42796939	40	1.9	41	82	10	97	26	28	20	24	1.99
42804617--42804788	40	4.3	40	88	2	222	25	27	21	25	1.99
42804619--42804841	40	5.6	39	83	5	216	25	27	21	25	1.99
42804617--42804841	80	2.8	79	80	7	240	25	27	21	25	1.99
42804773--42804850	40	1.9	41	82	10	97	26	28	20	24	1.99
42812251--42812282	14	2.3	14	94	0	55	53	15	0	31	1.43
42812383--42812417	17	2.1	16	89	5	52	62	5	8	22	1.45
42824143--42824287	50	2.9	50	78	0	146	22	30	22	25	1.99
42833010--42833068	26	2.3	26	90	0	91	33	16	8	40	1.79
42833237--42833271	6	5.8	6	96	0	61	17	31	2	48	1.61
42836467--42836516	25	2.0	25	100	0	100	36	16	8	40	1.77
42836467--42836513	15	3.5	15	70	27	50	36	12	8	42	1.74
42837996--42838109	50	2.3	50	85	0	165	20	28	24	26	1.99
42838511--42838568	30	1.9	30	86	6	82	29	24	6	39	1.81
42844042--42844162	33	3.7	33	85	0	125	39	34	9	16	1.80
42850924--42851154	118	2.0	118	98	0	444	36	7	17	37	1.79
42858178--42858316	35	4.0	35	86	0	197	38	32	12	16	1.87
42864463--42864543	26	3.2	26	65	28	73	22	14	29	33	1.94
42864548--42864637	46	2.0	44	85	8	119	24	17	25	32	1.97
42864767--42864798	16	2.0	16	93	0	55	59	0	15	25	1.36
42868474--42868520	6	7.8	6	100	0	94	17	31	0	51	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42871343--42871386	7	6.3	7	97	0	79	13	2	0	84	0.73
42873141--42873183	21	2.0	21	90	0	68	27	4	27	39	1.76
42875412--42875464	23	2.2	24	96	3	99	60	0	0	39	0.97
42875906--42875943	15	2.5	15	83	8	51	73	5	0	21	1.02
42883844--42883887	21	2.1	21	86	0	61	36	25	6	31	1.82
42884188--42884232	14	3.0	15	80	9	56	48	17	0	33	1.48
42884230--42884282	21	2.5	21	71	0	52	52	20	0	26	1.46
42885403--42885504	51	2.1	51	78	17	117	62	2	3	30	1.28
42885674--42885724	26	2.0	26	88	0	75	60	3	19	15	1.50
42892828--42892853	13	2.0	13	100	0	52	38	0	0	61	0.96
42893562--42893623	21	3.0	20	81	6	79	16	22	25	35	1.94
42897863--42897939	35	2.1	37	85	4	104	36	15	15	32	1.89
42906340--42906364	12	2.1	12	100	0	50	32	32	0	36	1.58
42909245--42909532	50	5.8	51	80	6	268	28	25	17	28	1.97
42909349--42909516	51	3.4	47	74	11	133	27	26	15	29	1.96
42909299--42909532	97	2.4	98	85	5	294	28	26	16	29	1.97
42909378--42909522	46	3.0	46	74	8	130	28	26	15	28	1.96
42912794--42912861	27	2.5	27	77	13	68	50	1	1	47	1.19
42916099--42916218	47	2.6	47	74	5	125	25	15	21	38	1.92
42919069--42919265	51	3.9	50	78	2	196	26	15	26	31	1.96
42923920--42924206	27	10.7	27	76	7	237	36	20	19	23	1.95
42924225--42924306	24	3.4	24	84	0	92	26	8	20	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42924378--42924437	27	2.2	27	88	5	86	23	23	20	33	1.97
42924482--42924575	32	2.9	32	79	0	107	20	22	24	32	1.97
42924579--42924625	22	2.1	22	84	0	58	19	17	17	46	1.84
42930944--42931214	136	2.0	137	82	0	337	30	25	22	21	1.99
42937390--42937424	18	1.9	18	88	0	52	8	34	5	51	1.56
42948580--42948717	39	3.5	39	87	0	195	47	21	2	28	1.63
42950238--42950299	31	2.0	31	96	0	115	38	37	6	17	1.76
42953968--42954018	20	2.5	20	81	12	61	31	9	15	43	1.80
42954560--42954595	18	1.9	18	88	5	54	58	2	0	38	1.13
42955205--42955287	29	2.9	28	76	5	76	33	22	8	34	1.85
42955670--42955720	3	16.7	3	84	11	68	70	0	29	0	0.87
42955670--42955720	13	4.2	12	85	11	68	70	0	29	0	0.87
42955670--42955720	16	3.3	16	89	5	70	70	0	29	0	0.87
42955969--42956010	19	2.2	19	86	0	57	83	0	16	0	0.65
42956344--42956402	17	3.4	17	80	17	68	37	20	6	35	1.79
42956420--42956827	17	23.2	17	70	12	193	27	13	12	46	1.79
42956420--42956808	35	11.1	34	71	11	166	27	13	12	46	1.79
42956548--42956868	52	5.9	55	70	11	173	29	12	12	45	1.79
42956642--42956732	19	4.9	18	72	20	55	30	14	13	41	1.84
42956824--42956870	20	2.4	20	86	10	62	46	10	4	38	1.58
42957786--42957828	18	2.5	17	88	3	59	23	9	16	51	1.73
42957896--42957959	19	3.5	18	77	16	60	37	15	6	40	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42957697--42958137	17	24.7	18	67	13	144	29	14	11	44	1.80
42957937--42958042	55	1.9	55	86	3	151	28	15	13	43	1.84
42957975--42958015	20	2.0	20	86	9	57	39	14	7	39	1.74
42958111--42958160	19	2.6	19	81	9	57	44	8	4	44	1.52
42964900--42964939	14	2.9	14	84	0	53	32	7	17	42	1.77
42964923--42964982	20	3.0	20	90	0	93	26	8	13	51	1.69
42965092--42965119	14	2.0	14	100	0	56	42	0	0	57	0.99
42965332--42965453	39	3.3	39	66	21	116	42	22	9	25	1.83
42965310--42965453	72	2.0	72	98	0	279	43	21	9	26	1.82
42965808--42965869	26	2.3	26	80	2	70	45	9	9	35	1.70
42965822--42965875	26	2.1	26	89	0	81	42	9	12	35	1.75
42973635--42974549	77	11.9	75	85	6	828	27	16	19	36	1.93
42973652--42974549	150	5.8	150	84	7	891	27	16	20	35	1.94
42973654--42974547	78	11.6	76	85	6	871	27	16	20	35	1.94
42974753--42974890	29	4.7	29	77	3	134	31	20	7	39	1.81
42975199--42975261	3	20.7	3	74	9	56	73	0	25	1	0.93
42975205--42975264	16	3.9	15	78	6	66	75	0	23	1	0.90
42975198--42975263	19	3.6	17	80	11	69	74	0	24	1	0.91
42975980--42976021	17	2.4	18	80	4	50	33	16	9	40	1.81
42975996--42976168	18	9.6	17	71	16	100	27	14	10	47	1.76
42976016--42976061	19	2.5	19	75	6	51	17	10	13	58	1.62
42976124--42976357	126	1.9	125	81	8	289	29	12	11	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42975996--42976339	144	2.4	142	80	8	342	28	12	11	47	1.76
42976241--42976373	17	7.6	16	69	18	70	27	12	12	46	1.79
42976193--42976288	38	2.6	36	75	9	86	38	14	7	39	1.74
42976247--42976288	20	2.1	20	86	8	59	40	14	7	38	1.73
42979310--42979343	16	2.1	16	88	0	50	67	8	14	8	1.41
42980763--42981106	51	6.8	50	80	6	340	29	25	15	29	1.96
42980765--42981106	102	3.4	102	85	4	428	29	26	15	28	1.96
42981020--42981102	26	3.2	26	65	21	66	33	26	10	28	1.90
42980767--42981105	153	2.2	149	79	6	380	30	25	15	28	1.96
42981204--42981236	17	2.1	17	88	11	52	63	6	0	30	1.18
42993205--42993421	35	6.2	36	74	10	166	41	16	17	23	1.89
42993262--42993386	67	1.9	66	89	1	196	42	17	16	24	1.88
42993229--42993424	102	1.9	101	84	5	261	41	16	17	24	1.90
42993331--42993442	35	3.2	34	87	6	136	43	16	16	24	1.86
43000687--43000805	63	1.9	63	91	1	195	31	22	15	30	1.95
43000749--43001017	51	5.3	50	76	8	217	30	26	14	28	1.95
43000788--43001017	102	2.3	102	89	3	347	30	26	14	29	1.95
43000788--43001021	51	4.6	51	78	6	224	29	25	14	29	1.95
43004584--43004635	20	2.8	18	78	21	63	51	1	1	44	1.23
43005088--43005122	18	1.9	18	88	0	52	28	0	5	65	1.15
43010006--43010252	50	4.8	50	81	4	237	22	28	21	27	1.99
43019722--43019773	23	2.3	22	83	3	59	71	0	28	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43020827--43020921	21	4.5	21	79	0	82	20	12	30	36	1.89
43023226--43023288	15	4.2	15	79	0	72	46	26	7	19	1.77
43026009--43026361	47	7.4	47	95	1	589	32	7	29	29	1.86
43030455--43030657	102	2.0	103	91	0	327	43	25	9	21	1.82
43030982--43031092	44	2.7	40	79	12	127	34	24	6	35	1.81
43031239--43031279	21	2.0	21	95	0	73	29	26	14	29	1.95
43033025--43033049	11	2.3	11	100	0	50	84	0	0	16	0.63
43033257--43033313	22	2.6	22	83	8	64	66	1	5	26	1.22
43039220--43039253	15	2.3	15	100	0	68	35	38	11	14	1.83
43040905--43040932	14	2.0	14	100	0	56	35	0	0	64	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153