genome.fa.s18.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  37  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12576590--12576630	13	3.0	14	79	13	50	0	14	9	75	1.04
12577103--12577404	44	6.8	44	74	10	211	28	20	19	31	1.97
12577377--12578380	50	20.1	50	69	2	530	28	23	19	29	1.98
12577542--12578293	249	3.0	250	81	1	952	28	24	19	27	1.99
12577644--12578384	150	4.9	150	78	0	784	28	24	19	27	1.98
12577391--12578425	100	10.4	100	83	0	1068	28	22	19	29	1.98
12579302--12579388	45	1.9	45	80	0	102	49	9	13	27	1.73
12587732--12587901	40	4.2	40	94	1	288	34	22	22	20	1.97
12587935--12588169	42	5.7	41	86	4	321	19	21	31	27	1.97
12587929--12588169	41	5.9	41	89	4	351	19	21	31	27	1.97
12587935--12588169	83	2.8	83	90	1	375	19	21	31	27	1.97
12588405--12588529	14	8.9	14	74	5	99	20	1	32	46	1.60
12588411--12588529	21	5.6	21	72	11	91	19	1	32	46	1.60
12588540--12588604	7	9.3	7	73	6	51	23	0	44	32	1.53
12588721--12588762	16	2.5	17	92	7	68	54	0	0	45	0.99
12592599--12592631	12	2.5	13	90	9	50	12	0	0	87	0.53
12593782--12593807	5	5.2	5	100	0	52	80	0	0	19	0.71
12593904--12594111	43	4.8	43	83	3	222	21	18	30	29	1.97
12596896--12596935	20	2.0	20	85	9	55	75	5	5	15	1.15
12597916--12597953	17	2.1	19	85	9	53	23	2	18	55	1.55
12601125--12601163	20	2.0	20	84	0	51	43	10	0	46	1.37
12604188--12604241	27	2.0	26	85	3	72	70	7	11	11	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12605012--12605136	12	9.8	12	70	17	74	52	8	13	25	1.67
12605017--12605084	23	2.9	23	82	12	77	50	10	14	25	1.74
12605020--12605136	25	4.6	25	74	17	98	52	8	13	24	1.68
12609258--12609513	52	4.9	52	98	0	485	33	15	23	26	1.95
12609487--12609596	37	3.0	37	89	2	170	35	15	23	25	1.94
12611130--12611159	12	2.5	12	94	0	51	10	23	36	30	1.87
12612048--12612140	36	2.6	36	77	6	100	44	30	9	16	1.79
12614524--12614782	4	66.8	4	73	7	131	0	58	3	38	1.14
12614524--12614782	10	26.7	10	71	7	131	0	58	3	38	1.14
12627230--12627506	87	3.2	87	96	0	518	26	10	42	20	1.84
12636150--12636318	48	3.5	48	88	0	221	26	20	30	23	1.98
12638813--12638852	20	2.0	21	90	5	64	37	0	2	60	1.11
12640104--12640376	135	2.0	135	98	0	528	23	20	28	27	1.99
12640656--12640714	18	3.5	16	84	11	66	23	8	54	13	1.66
12640665--12640714	18	2.8	18	96	0	91	26	8	52	14	1.68
12643423--12643451	7	4.1	7	100	0	58	13	0	0	86	0.58
12672642--12672731	42	2.2	42	93	2	155	42	13	16	27	1.86
12672633--12672721	42	2.2	40	90	8	135	37	12	16	33	1.87
12676774--12676805	3	10.7	3	100	0	64	65	0	0	34	0.93
12676935--12676980	14	3.3	14	93	0	83	56	2	0	41	1.11
12678563--12678635	26	2.8	25	78	12	76	32	16	8	42	1.78
12703299--12703544	10	25.7	9	66	20	67	60	4	2	33	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12703298--12703436	9	14.0	10	68	17	58	59	3	1	35	1.24
12704062--12704167	10	10.9	10	68	15	62	35	1	3	58	1.27
12704100--12704166	31	2.2	31	83	5	91	32	1	4	61	1.25
12704063--12704292	10	23.8	9	67	20	60	34	2	4	58	1.33
12710474--12710573	30	3.4	29	75	15	82	58	0	2	40	1.10
12710512--12710573	20	3.2	19	71	8	54	58	0	3	38	1.15
12710536--12710592	29	2.0	29	82	6	71	59	0	5	35	1.20
12710582--12710631	18	2.8	17	82	8	55	64	4	4	28	1.30
12710758--12710815	29	2.1	28	81	12	66	29	1	1	67	1.11
12712534--12712583	22	2.3	22	82	10	66	68	4	0	28	1.08
12712541--12712582	22	2.0	22	90	4	68	66	4	0	28	1.12
12715317--12715360	16	2.8	16	82	0	52	31	0	2	65	1.05
12722260--12722452	36	5.0	36	81	14	215	28	20	13	37	1.90
12722334--12722488	46	3.6	46	77	16	195	29	21	12	36	1.91
12722218--12722452	120	2.0	114	88	4	344	28	20	14	37	1.91
12722296--12722488	82	2.3	82	92	1	314	29	21	12	37	1.90
12722790--12722830	20	2.0	20	95	0	73	34	19	4	41	1.73
12722867--12722966	52	1.9	52	95	0	182	31	29	4	36	1.76
12732191--12732215	4	6.2	4	100	0	50	0	0	76	24	0.80
12735007--12735038	16	2.0	16	93	0	55	25	3	6	65	1.31
12738740--12738832	18	5.2	18	90	0	150	26	23	17	32	1.96
12738740--12738832	36	2.6	36	94	0	168	26	23	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12744543--12744696	25	6.2	25	84	3	168	20	29	18	31	1.96
12745173--12745284	25	4.5	25	82	0	134	24	26	16	33	1.96
12745241--12745289	25	2.0	25	87	0	71	24	28	14	32	1.94
12746805--12746851	24	1.9	25	86	4	69	29	31	2	36	1.70
12746893--12746951	29	2.0	29	80	6	66	37	6	10	45	1.65
12766472--12766646	9	19.0	9	65	19	58	60	5	1	33	1.26
12766430--12766558	32	4.0	31	71	16	84	58	3	1	36	1.23
12776927--12776959	3	11.0	3	100	0	66	66	0	33	0	0.92
12779839--12779916	14	5.1	14	68	24	50	33	7	14	44	1.73
12779862--12779901	20	2.0	20	90	0	62	27	10	12	50	1.72
12779847--12779913	34	1.9	35	93	3	118	31	7	13	47	1.70
12794484--12794982	259	1.9	260	88	1	750	34	21	14	30	1.93
12801408--12801451	22	2.0	22	95	0	79	34	13	20	31	1.92
12803060--12803122	32	2.0	32	93	0	108	33	22	11	33	1.89
12805918--12805956	18	2.2	19	86	9	55	25	0	17	56	1.41
12808223--12808254	3	10.7	3	100	0	64	65	0	34	0	0.93
12813357--12813449	18	5.2	18	90	0	150	27	24	16	31	1.96
12820559--12820592	17	2.0	17	100	0	68	58	0	11	29	1.33
12824230--12824264	3	11.7	3	93	0	61	65	2	31	0	1.07
12830999--12831162	82	2.0	82	98	0	319	28	9	15	46	1.77
12842314--12842343	4	7.5	4	100	0	60	23	0	76	0	0.78
12847309--12847852	272	2.0	272	99	0	1079	32	7	9	50	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12848087--12848114	7	4.0	7	100	0	56	57	14	0	28	1.38
12852174--12852534	180	2.0	181	93	0	616	32	13	9	43	1.77
12855722--12855765	22	2.0	22	86	8	63	59	2	6	31	1.36
12857816--12858457	44	14.6	44	73	5	492	30	24	16	28	1.96
12857993--12858459	132	3.5	131	86	4	566	30	24	15	28	1.96
12879692--12879736	22	2.0	22	82	4	54	44	2	8	44	1.47
12905316--12905382	34	1.9	35	84	3	91	44	11	10	32	1.75
12912462--12912510	5	9.6	5	89	10	73	42	18	0	38	1.50
12914196--12914247	23	2.3	23	100	0	104	17	11	23	48	1.79
12927617--12927790	69	2.5	69	84	5	201	32	14	21	32	1.93
12927808--12928010	74	2.7	75	93	1	336	33	17	22	26	1.96
12928080--12928284	76	2.7	76	94	0	356	33	17	22	26	1.96
12927617--12928559	274	3.5	270	95	2	1617	30	15	20	33	1.94
12928354--12928935	75	7.5	75	91	5	778	30	16	20	32	1.95
12928558--12928807	84	3.0	86	96	1	445	29	16	18	35	1.93
12928335--12929531	159	7.5	156	76	16	953	28	17	20	33	1.95
12929004--12929440	73	5.8	73	77	9	437	27	18	23	30	1.98
12934767--12934946	45	4.0	45	83	4	213	36	27	15	20	1.93
12934771--12934946	90	2.0	89	85	1	235	36	28	14	20	1.91
12937288--12937421	40	3.4	39	77	9	130	33	23	17	26	1.96
12937662--12937798	40	3.5	40	80	5	163	39	20	17	22	1.92
12941368--12941415	12	4.3	12	75	17	50	60	0	2	37	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12941367--12941406	21	1.9	21	94	0	71	62	0	2	35	1.09
12941368--12941455	11	8.4	11	70	20	55	61	0	2	36	1.09
12941399--12941485	17	4.8	17	72	15	66	60	0	1	37	1.04
12941380--12941473	40	2.4	39	89	5	152	63	0	2	34	1.06
12942145--12942182	9	4.4	9	83	9	53	21	0	0	78	0.74
12944568--12944893	43	7.6	43	79	5	288	21	15	30	32	1.95
12944598--12944893	129	2.3	128	85	2	387	21	16	30	31	1.96
12944568--12944893	86	3.8	86	82	4	367	21	15	30	32	1.95
12945679--12945746	7	9.9	7	74	17	54	52	2	1	42	1.25
12966541--12966579	19	2.1	19	85	0	51	12	10	23	53	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153