genome.fa.s18.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  137  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43045495--43045590	46	2.1	46	82	3	113	23	21	21	32	1.98
43054275--43054303	13	2.3	13	94	5	51	13	10	13	62	1.55
43059056--43059102	22	2.1	22	88	7	69	78	2	2	17	0.94
43059873--43059970	40	2.5	40	100	0	196	34	18	9	37	1.83
43061999--43062057	30	2.0	30	86	0	82	44	5	22	28	1.74
43062242--43062282	18	2.3	18	88	12	59	36	0	19	43	1.51
43062505--43062603	23	4.3	23	94	0	162	22	22	27	28	1.99
43062964--43063082	23	5.3	23	85	3	154	22	21	26	29	1.99
43062964--43063082	46	2.7	46	88	3	172	22	21	26	29	1.99
43064251--43064369	23	5.3	23	85	3	154	22	21	26	29	1.99
43064251--43064369	46	2.7	46	88	3	172	22	21	26	29	1.99
43064760--43065225	235	2.0	235	100	0	932	39	7	18	34	1.78
43075152--43075246	40	2.4	38	86	8	136	38	23	20	17	1.93
43075285--43075557	41	6.7	41	87	0	384	25	19	24	31	1.98
43075818--43075854	14	2.6	14	91	0	56	21	0	32	45	1.52
43075903--43075935	14	2.3	15	94	5	59	30	0	33	36	1.58
43075955--43075986	7	4.6	7	92	0	55	15	3	53	28	1.57
43076031--43076193	87	1.9	89	92	2	276	26	0	28	44	1.59
43076174--43076219	14	3.3	14	84	0	56	23	0	43	32	1.54
43076174--43076219	21	2.2	21	84	7	58	23	0	43	32	1.54
43076324--43076383	7	8.6	7	81	5	59	18	3	50	28	1.63
43076118--43076377	132	2.0	132	80	4	301	27	1	30	40	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43079198--43079227	15	2.0	15	100	0	60	13	6	20	60	1.55
43079667--43079704	19	2.0	19	85	10	51	2	0	28	68	1.03
43081176--43081225	23	2.3	23	83	13	61	58	4	2	36	1.29
43081235--43081456	43	5.2	42	80	6	225	23	16	30	28	1.96
43081248--43081455	86	2.4	87	83	6	253	23	17	31	27	1.97
43082366--43082399	3	11.3	3	100	0	68	32	0	0	67	0.91
43092961--43093011	26	1.9	27	81	18	63	27	21	29	21	1.99
43094656--43094695	19	2.1	19	86	9	55	42	7	10	40	1.67
43097300--43097476	50	3.6	49	81	6	171	31	23	24	20	1.98
43104820--43105011	50	3.7	50	84	4	213	26	21	29	22	1.99
43107749--43107814	27	2.5	27	85	4	82	21	19	24	34	1.96
43111761--43112717	50	19.2	49	76	4	854	31	21	20	25	1.98
43111775--43112704	100	9.3	100	91	0	1457	31	21	20	26	1.98
43121890--43121975	40	2.2	40	82	0	100	32	17	30	19	1.95
43123939--43124196	45	5.7	45	78	7	179	41	15	20	22	1.90
43124025--43124196	90	1.9	90	80	4	204	38	15	22	23	1.92
43127879--43127933	25	2.2	25	83	6	67	30	23	21	23	1.99
43128098--43128167	31	2.3	31	80	11	83	31	7	24	37	1.82
43150304--43150391	40	2.2	40	82	8	108	35	15	29	19	1.93
43159754--43159785	16	2.0	16	100	0	64	12	12	25	50	1.75
43166197--43166278	25	3.3	24	83	11	103	36	19	21	21	1.95
43166195--43166267	25	2.9	25	86	11	105	34	20	23	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43175025--43175246	51	4.4	51	83	3	250	28	15	25	30	1.96
43175028--43175246	101	2.2	102	81	2	244	28	15	25	30	1.96
43177290--43177372	25	3.4	24	77	11	87	30	15	26	27	1.96
43177270--43177384	50	2.3	49	82	7	151	31	17	24	26	1.97
43178073--43178155	25	3.4	24	77	11	87	30	15	26	27	1.96
43178053--43178167	50	2.3	49	82	7	151	31	17	24	26	1.97
43176637--43178515	783	2.4	783	97	0	3550	33	21	15	29	1.94
43183143--43183168	12	2.2	12	100	0	52	7	30	38	23	1.83
43191184--43191293	54	2.0	54	84	3	141	17	26	28	28	1.97
43194421--43194471	23	2.3	20	81	15	57	21	5	5	66	1.35
43204546--43204584	20	2.0	20	90	10	62	15	23	5	56	1.59
43204849--43205034	50	3.6	50	79	4	174	25	29	19	26	1.99
43209084--43209114	16	1.9	16	93	0	53	48	0	9	41	1.36
43209795--43209823	8	3.6	8	100	0	58	24	0	0	75	0.80
43211755--43212407	217	3.0	217	98	0	1261	33	11	14	40	1.82
43215637--43215676	15	2.6	15	88	4	62	62	2	0	35	1.09
43215724--43215787	32	2.0	32	90	0	101	26	26	10	35	1.90
43220899--43220932	14	2.5	13	86	9	50	26	2	5	64	1.30
43223607--43223638	14	2.3	14	100	0	64	6	15	46	31	1.71
43228736--43228767	14	2.3	14	100	0	64	6	15	46	31	1.71
43239763--43239841	25	3.2	24	83	7	88	22	24	24	29	1.99
43241724--43241952	29	8.0	29	77	8	191	39	13	23	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43241737--43241817	26	3.0	25	82	10	99	45	17	17	19	1.85
43241737--43241847	55	2.0	55	92	0	186	44	14	19	21	1.86
43245797--43245840	20	2.2	20	91	0	70	34	0	25	40	1.56
43245916--43246032	34	3.4	34	75	2	117	23	24	21	29	1.99
43245909--43246059	69	2.2	69	84	0	194	22	23	20	33	1.97
43245879--43246009	35	3.8	35	74	2	120	22	24	22	30	1.99
43257278--43257662	50	7.7	50	73	1	313	31	21	21	25	1.98
43257274--43257684	200	2.1	200	90	0	635	32	20	20	25	1.97
43257274--43257684	100	4.1	99	87	3	572	32	20	20	25	1.97
43257274--43257742	100	4.7	99	83	5	534	32	20	20	26	1.97
43257701--43258005	44	6.8	44	75	7	229	30	20	21	28	1.98
43257789--43257959	89	1.9	88	86	3	245	29	21	22	26	1.99
43262179--43262227	21	2.3	21	78	3	53	26	2	22	48	1.61
43262590--43262649	29	2.1	29	84	6	77	50	8	5	36	1.55
43264218--43264450	123	1.9	121	81	6	283	45	6	3	44	1.49
43264542--43264684	15	9.4	15	73	19	93	41	1	4	52	1.29
43264557--43264684	17	7.2	17	75	20	111	42	0	3	53	1.25
43264540--43264680	17	8.1	17	70	19	78	42	1	4	51	1.30
43264617--43264684	31	2.3	30	82	9	86	39	1	5	52	1.34
43264731--43264769	15	2.6	15	83	0	51	43	2	0	53	1.14
43264748--43264786	19	2.2	19	90	9	64	41	2	0	56	1.13
43264779--43264847	34	2.0	36	91	5	115	46	15	1	36	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43264842--43264866	12	2.1	12	100	0	50	52	16	0	32	1.44
43264839--43264928	21	4.3	21	69	21	73	48	15	2	33	1.57
43264970--43265081	9	13.1	9	76	11	101	44	22	1	31	1.63
43265098--43265370	95	2.9	94	79	6	289	43	17	2	36	1.64
43265398--43265462	33	1.9	35	90	6	107	49	38	0	12	1.41
43265817--43265843	14	1.9	14	100	0	54	44	0	0	55	0.99
43265817--43265876	22	2.9	22	85	11	74	40	0	0	60	0.97
43267580--43267658	31	2.6	31	89	2	115	36	3	24	35	1.73
43272312--43272376	14	4.6	14	76	14	71	60	0	12	27	1.33
43272291--43272376	42	2.0	42	97	0	163	59	0	12	27	1.34
43272425--43272452	12	2.3	12	100	0	56	42	17	25	14	1.87
43286821--43286882	32	2.0	31	90	3	97	22	17	14	43	1.85
43287803--43287849	19	2.4	20	85	3	60	48	4	8	38	1.53
43287803--43287853	20	2.6	19	87	3	66	47	3	9	39	1.55
43291969--43291993	5	5.0	5	100	0	50	40	0	0	60	0.97
43292487--43292526	20	2.0	19	90	9	62	57	10	2	30	1.45
43292869--43292957	44	2.0	44	97	0	169	29	8	13	48	1.73
43294306--43294385	42	1.9	42	86	0	115	25	31	15	28	1.95
43294301--43294406	42	2.5	42	78	0	113	22	29	19	28	1.98
43295067--43295097	15	2.1	15	100	0	62	32	25	6	35	1.82
43297436--43297513	38	2.0	39	85	7	106	25	14	10	50	1.74
43297592--43297654	26	2.4	26	87	10	85	50	6	1	41	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43299906--43300137	124	1.9	124	87	3	342	27	17	21	34	1.95
43302505--43302772	23	11.7	23	89	0	410	24	6	22	47	1.74
43302498--43302560	23	2.4	28	70	30	73	22	6	26	44	1.76
43302505--43302772	69	3.9	69	98	0	509	24	6	22	47	1.74
43302774--43302962	25	7.7	25	78	11	203	42	13	0	43	1.44
43302774--43303029	25	10.6	25	72	15	157	43	13	0	42	1.44
43302799--43303030	96	2.4	96	94	1	412	44	12	0	42	1.43
43303463--43303502	18	2.2	18	95	0	71	42	5	30	22	1.75
43305297--43305407	51	2.2	51	88	3	170	42	1	24	31	1.65
43305391--43305420	13	2.3	13	100	0	60	40	0	26	33	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153