genome.fa.s18.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  83  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26388202--26388270	10	7.2	9	72	16	50	69	5	2	21	1.23
26388326--26388379	27	2.0	28	85	3	74	70	0	3	25	1.04
26388326--26388624	19	15.8	20	66	21	78	63	2	3	30	1.24
26388353--26388420	23	3.1	23	79	10	81	64	1	4	29	1.21
26388522--26388643	8	13.7	9	77	14	103	68	0	1	29	1.05
26388522--26388644	27	4.6	28	79	9	116	68	0	1	29	1.05
26388567--26388644	39	2.0	38	85	11	106	66	1	2	29	1.13
26393165--26393265	43	2.3	43	86	3	132	23	10	22	42	1.85
26393203--26393358	43	3.6	42	75	10	127	23	16	20	39	1.92
26401627--26401698	25	2.9	25	80	0	81	33	19	19	27	1.96
26422105--26422149	16	2.8	16	93	0	72	40	4	28	26	1.75
26422346--26422463	56	2.1	55	81	6	130	52	4	0	43	1.20
26424913--26425298	51	7.7	50	79	7	390	29	26	15	29	1.96
26424921--26425298	102	3.7	102	85	5	450	29	26	15	29	1.96
26426079--26426533	229	2.0	229	98	0	883	31	21	6	40	1.79
26427955--26428008	6	9.2	6	87	4	74	66	16	12	3	1.38
26428621--26428811	50	3.7	49	80	7	193	26	19	29	24	1.98
26428625--26428811	100	1.8	104	81	9	240	26	18	29	24	1.98
26430317--26430375	23	2.6	22	82	10	75	44	20	3	32	1.68
26435283--26435341	23	2.6	22	82	10	75	44	20	3	32	1.68
26436752--26436878	64	2.0	64	87	0	182	37	12	22	27	1.90
26438763--26438894	27	4.9	27	74	5	124	39	19	19	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26438775--26438894	54	2.2	54	89	2	179	39	18	20	21	1.93
26438804--26439244	27	16.4	27	75	6	306	36	19	20	24	1.95
26438765--26438915	81	1.9	81	80	5	180	37	19	20	22	1.95
26438938--26439241	81	3.8	81	87	0	403	35	18	20	25	1.95
26439261--26439442	24	7.6	24	88	2	249	26	8	20	44	1.79
26439511--26439570	27	2.2	27	88	11	88	18	25	25	31	1.97
26439558--26439623	26	2.5	26	85	0	78	19	21	24	34	1.96
26439617--26439772	32	4.9	32	81	3	161	17	21	22	37	1.94
26443102--26443561	27	17.1	26	79	7	271	36	20	20	23	1.95
26443225--26443561	54	6.2	54	83	0	388	35	18	21	24	1.96
26443102--26443562	81	5.7	81	81	2	453	36	19	20	23	1.95
26443551--26443694	24	6.0	23	77	11	69	26	8	22	43	1.81
26443579--26443700	24	5.1	24	82	7	149	27	7	19	45	1.76
26443864--26444007	32	4.5	32	74	3	119	22	18	20	38	1.94
26444019--26444070	22	2.4	22	80	0	59	17	19	19	44	1.87
26444174--26444235	24	2.6	24	97	0	115	25	6	48	19	1.72
26460505--26460549	23	1.9	24	82	13	58	42	4	20	33	1.72
26462542--26462581	20	2.0	20	95	0	71	22	0	12	65	1.26
26468833--26468858	6	4.3	6	100	0	52	34	0	65	0	0.93
26480175--26480227	26	2.1	24	82	6	61	50	3	13	32	1.59
26481478--26481590	25	4.6	26	79	8	130	22	26	21	30	1.99
26481468--26481584	49	2.4	49	88	1	171	22	26	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26488444--26488481	12	3.5	11	86	13	53	76	5	13	5	1.13
26491477--26491545	23	3.0	23	91	4	104	34	17	24	23	1.96
26496295--26496400	4	26.5	4	100	0	212	50	24	0	25	1.50
26498598--26498633	4	9.0	4	93	0	63	72	2	0	25	0.98
26515238--26515316	38	2.2	35	84	10	106	32	12	17	36	1.88
26515247--26515322	38	2.0	38	100	0	152	28	10	18	42	1.83
26520173--26520270	27	3.6	27	91	0	151	19	27	26	26	1.99
26524497--26524719	27	8.3	27	82	2	223	41	19	16	21	1.90
26526255--26526323	27	2.6	27	90	4	104	36	13	28	21	1.91
26537625--26537686	27	2.2	29	83	11	76	69	8	3	19	1.28
26540701--26540748	22	2.2	22	92	0	78	37	8	20	33	1.83
26555403--26555464	25	2.5	24	79	10	70	32	29	16	22	1.95
26560874--26560921	22	2.2	21	82	17	55	45	2	10	41	1.50
26561423--26561487	34	1.9	34	93	0	112	38	20	9	32	1.84
26565620--26565751	27	4.9	27	80	0	147	23	21	18	36	1.95
26568640--26568703	29	2.1	32	82	8	80	34	3	9	53	1.49
26571057--26571095	3	13.0	3	100	0	78	33	0	0	66	0.92
26571162--26571424	76	3.3	83	74	14	289	33	12	2	51	1.53
26571220--26571277	27	2.2	27	81	6	66	31	8	1	58	1.38
26571177--26571484	157	2.0	151	94	3	544	31	12	2	53	1.52
26580016--26580154	44	3.2	44	64	15	115	28	25	23	23	1.99
26580192--26580335	44	3.3	44	61	7	103	27	27	23	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26579782--26580456	88	7.7	88	88	0	927	30	27	21	20	1.98
26580458--26580553	44	2.2	44	83	3	122	23	20	25	30	1.99
26581063--26581166	44	2.4	44	85	3	129	30	20	19	29	1.97
26582000--26582038	15	2.6	16	80	12	55	15	2	0	82	0.79
26582614--26582661	3	16.0	3	95	0	87	33	2	0	64	1.05
26582993--26583082	28	3.1	28	73	20	87	33	2	4	60	1.29
26587911--26587989	29	2.8	29	83	11	94	39	16	18	25	1.91
26590053--26590108	27	2.1	27	83	6	69	30	12	25	32	1.92
26599452--26599508	12	5.5	11	74	19	52	77	1	1	19	0.95
26599448--26599508	18	3.1	18	75	25	61	77	1	1	19	0.95
26599681--26599709	14	2.0	15	93	6	51	62	0	37	0	0.96
26610687--26610720	16	2.1	16	89	10	52	55	5	0	38	1.24
26612994--26613120	41	3.1	41	78	2	137	20	18	26	33	1.96
26615801--26615863	20	3.1	20	82	11	83	11	31	22	34	1.89
26628417--26628443	14	1.9	14	100	0	54	48	7	14	29	1.71
26636013--26636079	25	2.7	25	88	0	107	29	17	16	35	1.92
26646084--26646242	41	3.9	41	72	6	124	20	19	27	32	1.97
26646140--26646219	42	1.9	41	84	2	106	17	21	27	33	1.96
26647349--26647386	19	2.1	19	85	5	51	23	18	2	55	1.55
26648674--26648712	14	2.8	13	85	14	60	46	2	15	35	1.60
26662164--26662341	27	6.6	27	83	3	205	26	15	28	29	1.96
26662165--26662320	82	1.9	81	88	3	233	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26662161--26662341	82	2.2	81	83	2	229	27	15	27	29	1.96
26665683--26665855	63	2.7	62	81	3	168	27	6	31	35	1.82
26666659--26667102	221	2.0	221	98	0	861	35	18	22	23	1.96
26669365--26669424	19	3.3	19	81	11	63	21	6	0	71	1.08
26669365--26669412	19	2.5	20	83	10	64	22	6	0	70	1.09
26672039--26672063	6	4.2	6	100	0	50	16	0	0	84	0.63
26678786--26678828	22	2.0	21	90	4	68	69	0	6	23	1.12
26684616--26684666	6	8.2	6	77	16	50	21	3	0	74	0.98
26688640--26688729	43	2.1	43	100	0	130	32	18	16	32	1.94
26690270--26690305	6	6.0	6	86	0	54	19	2	47	30	1.64
26704520--26704548	14	2.0	15	93	6	51	27	0	24	48	1.51
26705139--26705241	28	3.7	28	89	0	152	31	11	24	33	1.91
26707854--26707878	13	1.9	13	100	0	50	48	0	24	28	1.52
26713481--26713548	31	2.2	31	97	0	127	36	19	8	35	1.83
26726481--26726558	20	3.9	20	81	9	97	6	21	25	46	1.75
26730757--26731025	42	6.3	43	77	4	229	27	26	18	27	1.98
26730757--26730959	85	2.4	85	78	1	228	29	26	19	24	1.99
26730884--26731025	44	3.2	44	83	8	166	26	26	17	30	1.97
26731415--26731465	21	2.4	21	90	0	75	3	47	15	33	1.64
26736745--26737049	9	35.4	9	68	17	159	32	0	18	47	1.56
26736774--26736970	25	8.2	24	70	20	119	32	0	19	47	1.54
26736747--26737049	16	18.7	16	69	19	166	32	0	18	47	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26736840--26737049	34	6.3	34	73	14	147	31	0	19	48	1.55
26736989--26737035	12	4.2	12	79	20	66	31	0	14	53	1.42
26736989--26737038	20	2.5	20	93	3	82	32	0	16	52	1.44
26736989--26737064	28	2.6	29	85	12	93	32	0	15	51	1.44
26737891--26737950	26	2.3	26	94	0	102	41	3	13	41	1.60
26738526--26738579	24	2.2	24	87	6	74	37	0	37	25	1.57
26739093--26739130	20	1.9	20	88	0	58	57	10	0	31	1.32
26739494--26739549	14	4.0	14	81	9	51	44	35	0	19	1.51
26739529--26739555	14	1.9	14	100	0	54	44	55	0	0	0.99
26739650--26739698	21	2.3	22	85	3	64	53	24	2	20	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153