genome.fa.s18.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  14  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4678378--4678894	259	2.0	259	98	0	998	26	26	17	29	1.98
4680964--4681038	16	4.4	17	76	14	64	42	1	0	56	1.08
4680965--4681014	16	2.9	17	88	5	66	50	0	0	50	1.00
4681670--4681715	8	5.2	9	80	12	51	41	2	0	56	1.11
4682503--4682546	22	2.0	22	86	4	63	27	9	9	54	1.62
4683105--4683145	19	2.2	19	86	8	57	34	0	2	63	1.08
4684430--4684456	14	1.9	14	100	0	54	44	3	14	37	1.63
4684555--4684593	12	3.3	12	82	3	53	64	0	0	35	0.94
4686357--4686392	18	2.1	17	89	5	54	72	0	5	22	1.05
4692486--4692578	18	5.2	18	90	0	150	31	16	24	27	1.96
4692486--4692578	36	2.6	36	94	0	168	31	16	24	27	1.96
4697192--4697284	18	5.2	18	86	0	132	32	15	23	29	1.95
4697192--4697284	36	2.6	37	89	6	147	32	15	23	29	1.95
4705104--4705162	29	2.0	30	86	3	84	32	8	1	57	1.39
4705112--4705184	26	2.8	25	75	18	76	34	5	1	58	1.29
4705142--4705195	26	2.1	26	82	6	65	35	3	1	59	1.26
4707044--4707082	21	1.9	21	94	5	71	51	10	10	28	1.68
4707130--4707177	14	3.1	15	82	14	53	45	0	2	52	1.12
4707182--4707221	21	2.0	19	85	9	53	55	0	0	45	0.99
4707184--4707216	16	2.0	17	88	5	50	54	0	0	45	0.99
4710139--4710470	130	2.6	128	82	6	404	37	17	15	28	1.91
4713555--4713756	75	2.7	75	93	1	343	27	18	20	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4713555--4713745	40	5.0	39	68	23	147	27	19	20	32	1.97
4713765--4713794	10	2.8	11	90	10	53	83	0	0	16	0.65
4717009--4717049	19	2.2	19	90	0	64	29	0	4	65	1.13
4718217--4718259	19	2.4	18	81	11	52	53	2	0	44	1.13
4727872--4727899	12	2.3	12	100	0	56	39	7	0	53	1.28
4728236--4728296	29	2.2	29	85	5	72	34	3	21	40	1.69
4729268--4729305	20	1.9	20	94	0	67	52	0	2	44	1.14
4740882--4740909	13	2.2	13	100	0	56	46	7	7	39	1.59
4748405--4748467	32	2.0	32	93	0	108	31	19	20	28	1.97
4749605--4749656	27	1.9	27	100	0	104	32	7	5	53	1.53
4753494--4753721	59	3.9	58	82	3	237	35	6	7	50	1.56
4753728--4753783	28	2.0	28	92	0	94	23	12	16	48	1.80
4754946--4754984	13	2.9	14	80	7	53	79	5	0	15	0.90
4757559--4757770	46	4.6	46	93	0	370	22	22	27	28	1.99
4758568--4758610	14	3.1	14	82	0	59	32	18	4	44	1.71
4758568--4758621	28	1.9	28	84	0	72	35	18	7	38	1.79
4758851--4758938	29	3.0	29	77	1	95	29	22	6	40	1.80
4758979--4759042	28	2.2	28	83	2	83	42	23	0	34	1.55
4774610--4774671	22	2.9	21	81	11	72	33	9	19	37	1.84
4781029--4781179	53	2.8	53	85	4	187	25	17	27	29	1.98
4786900--4786947	17	2.8	17	74	22	55	62	0	0	37	0.95
4787584--4787655	31	2.3	31	85	4	92	30	22	9	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4789488--4789518	2	15.5	2	93	0	53	54	0	45	0	0.99
4796468--4796513	21	2.3	20	78	17	51	47	0	0	52	1.00
4801552--4801585	17	2.0	17	88	0	50	52	0	0	47	1.00
4813926--4814145	46	4.7	47	84	4	250	20	22	15	41	1.89
4813926--4814098	93	1.9	92	86	4	249	19	21	16	42	1.89
4822358--4822467	51	2.2	51	93	0	184	30	21	12	34	1.91
4825065--4825123	14	4.1	15	80	20	65	50	1	0	47	1.11
4825068--4825125	21	2.8	21	72	15	57	50	1	0	48	1.11
4827031--4827089	14	4.1	15	80	20	65	50	1	0	47	1.11
4827034--4827091	21	2.8	21	72	15	57	50	1	0	48	1.11
4829121--4829204	42	2.0	43	90	2	134	52	3	4	39	1.40
4829255--4829326	32	2.3	32	86	6	96	40	8	5	45	1.57
4850753--4851043	95	3.1	95	92	1	483	21	21	18	38	1.94
4862995--4863023	13	2.1	14	93	6	51	34	0	0	65	0.93
4863433--4863597	90	1.9	85	86	6	231	47	12	4	34	1.63
4869799--4869875	32	2.4	31	83	14	93	71	1	1	25	1.01
4870507--4870545	17	2.3	17	86	0	51	33	0	0	66	0.92
4870514--4870575	22	2.6	24	82	17	85	35	1	0	62	1.05
4870514--4870576	24	2.8	22	81	18	76	36	1	0	61	1.05
4871003--4871034	3	10.7	3	93	0	55	65	0	3	31	1.08
4875245--4875276	12	2.7	12	90	0	55	37	0	62	0	0.95
4879245--4879395	53	2.8	53	89	4	214	25	16	27	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4885260--4885399	52	2.7	53	87	4	194	24	18	27	29	1.98
4886817--4887163	168	2.1	168	86	4	486	32	10	14	41	1.81
4889246--4889279	9	3.7	9	88	7	50	44	0	0	55	0.99
4894254--4894287	12	2.8	12	100	0	68	55	0	0	44	0.99
4895878--4896004	42	3.0	42	85	6	161	29	25	14	30	1.95
4895963--4896273	47	6.6	47	91	0	471	30	24	15	29	1.96
4902819--4902999	38	4.6	38	84	10	245	34	16	23	25	1.95
4907507--4907564	25	2.5	22	81	10	62	48	0	0	51	1.00
4907508--4907584	38	2.1	36	88	9	111	51	0	0	48	1.00
4908150--4908174	2	12.5	2	100	0	50	0	0	48	52	1.00
4917566--4917611	6	7.7	6	100	0	92	15	50	17	17	1.79
4922486--4922688	46	4.3	48	88	7	265	35	14	21	28	1.92
4922420--4922688	98	2.7	98	93	0	457	34	14	22	28	1.93
4922652--4922797	37	4.0	37	93	1	242	36	16	21	24	1.94
4935250--4935285	17	2.1	17	94	0	63	44	5	22	27	1.75
4938536--4938705	46	3.7	47	75	13	172	33	29	17	20	1.95
4938543--4938714	93	1.8	93	88	2	265	31	29	18	20	1.96
4938637--4938722	46	1.9	45	88	4	129	30	29	19	20	1.97
4940352--4940434	25	3.2	25	68	18	62	21	22	19	36	1.95
4940448--4940576	25	5.2	24	71	7	62	19	24	20	34	1.96
4940467--4940532	25	2.7	25	78	2	71	22	27	18	31	1.97
4940422--4940538	24	4.8	25	74	3	87	20	27	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4942411--4942444	16	2.2	16	89	5	52	47	8	5	38	1.59
4950300--4950331	7	4.6	7	96	0	55	25	0	9	65	1.22
4950287--4950331	14	3.1	15	84	9	58	26	0	6	66	1.16
4951330--4951423	27	3.5	26	73	12	75	52	1	2	44	1.20
4951378--4951424	10	4.5	10	75	19	51	51	2	0	46	1.13
4951388--4951471	33	2.5	34	82	7	100	53	4	1	40	1.30
4956263--4956299	18	2.1	18	100	0	74	29	0	5	64	1.15
4964052--4964157	44	2.4	44	82	0	131	29	22	15	33	1.94
4964104--4964215	58	1.9	58	92	0	188	25	24	18	31	1.98
4968513--4968547	17	2.1	17	94	0	61	48	2	5	42	1.41
4971184--4971242	28	2.1	27	81	9	66	42	0	1	55	1.09
4973909--4973936	14	2.0	14	100	0	56	21	14	0	64	1.29
4975609--4975659	20	2.4	21	83	6	59	37	5	3	52	1.44
4980330--4980374	21	2.1	22	83	4	56	66	0	6	26	1.16
4985132--4985174	9	4.7	9	78	16	52	53	0	0	46	1.00
4985109--4985184	28	2.6	28	82	14	91	53	0	2	43	1.14
4990693--4990724	3	10.7	3	100	0	64	34	0	0	65	0.93
4990724--4990756	11	2.9	12	82	17	52	78	0	21	0	0.75
5012107--5012185	23	3.4	23	79	6	88	43	21	24	11	1.85
5012090--5012185	46	2.1	46	82	0	111	42	21	22	12	1.87
5016171--5016210	18	2.2	18	95	0	71	17	25	20	37	1.94
5019551--5019626	27	2.7	29	78	12	95	26	51	0	22	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5020015--5020048	11	3.0	11	91	4	50	32	0	0	67	0.91
5020015--5020046	15	2.1	15	94	5	55	31	0	0	68	0.90
5019904--5020037	63	2.2	63	82	8	159	26	4	5	63	1.37
5020624--5020691	30	2.3	30	82	5	75	48	5	17	27	1.70
5021314--5021381	30	2.3	30	84	5	84	47	5	19	27	1.72
5024028--5024271	126	1.9	126	93	0	416	28	17	15	38	1.90
5027777--5027821	21	2.1	21	91	0	72	37	22	24	15	1.93
5030369--5030448	15	5.3	15	77	15	60	75	2	21	1	1.00
5030366--5030432	12	5.2	13	76	18	61	77	1	20	0	0.85
5030365--5030432	25	2.6	27	82	15	74	77	1	20	0	0.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153