genome.fa.s18.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  134  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42104749--42104846	43	2.3	43	81	10	103	27	18	24	29	1.98
42106282--42106573	23	12.6	23	78	4	264	29	12	17	40	1.86
42106279--42106523	46	5.3	46	82	2	303	28	11	18	40	1.86
42106279--42106531	92	2.7	92	90	0	398	29	11	17	41	1.85
42106912--42106945	3	11.3	3	100	0	68	67	0	0	32	0.91
42108993--42109018	11	2.4	11	100	0	52	26	0	0	73	0.84
42108987--42109032	17	2.7	17	79	0	56	39	0	0	60	0.97
42109016--42109135	11	11.4	11	73	20	87	40	2	0	57	1.12
42109009--42109150	41	3.4	41	87	3	196	40	2	0	57	1.10
42109027--42109086	30	2.0	30	83	6	77	35	3	0	61	1.12
42109092--42109150	21	2.8	20	76	14	66	40	1	0	57	1.09
42109117--42109176	22	2.8	22	83	14	72	40	1	1	56	1.19
42110275--42110370	31	3.1	31	93	3	165	32	9	12	45	1.74
42110930--42110981	17	2.9	17	82	5	59	75	11	11	1	1.14
42110929--42111070	9	14.8	9	67	25	69	71	11	14	2	1.26
42110965--42111045	21	3.9	21	85	11	121	67	9	18	3	1.34
42110955--42111051	41	2.3	40	89	6	158	70	10	16	3	1.28
42111015--42111059	20	2.5	17	85	10	54	71	11	15	2	1.24
42110955--42111053	20	4.8	19	82	15	117	68	11	17	3	1.31
42115231--42115339	32	3.4	32	97	1	202	31	11	11	45	1.76
42117411--42117467	13	4.9	13	68	27	56	49	1	0	49	1.11
42117426--42117512	19	4.8	18	73	12	88	42	4	0	52	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42117915--42118015	51	2.0	51	81	11	118	45	16	0	36	1.55
42120468--42120803	23	14.4	23	67	18	128	41	16	11	31	1.83
42120469--42120639	71	2.4	70	78	11	172	39	18	12	29	1.87
42120519--42120656	73	1.9	72	82	8	172	39	18	13	29	1.88
42120596--42120806	92	2.3	90	91	1	350	42	14	11	31	1.81
42120596--42120806	45	4.6	45	91	4	334	42	14	11	31	1.81
42121156--42121190	15	2.3	15	90	9	54	51	22	0	25	1.48
42121833--42121948	43	2.7	43	84	12	166	27	30	20	21	1.98
42130846--42130894	25	2.0	25	100	0	98	48	6	16	28	1.69
42140105--42140272	83	2.0	83	96	0	309	36	16	22	24	1.94
42146069--42146118	23	2.2	22	80	13	57	36	8	12	44	1.71
42150018--42150086	17	3.8	18	78	12	61	34	0	1	63	1.03
42150040--42150086	12	3.1	16	75	25	57	31	0	2	65	1.04
42150116--42150146	2	16.0	2	93	6	55	51	0	0	48	1.00
42153855--42153894	21	1.9	21	89	0	62	15	32	22	30	1.94
42163630--42163669	16	2.4	16	87	8	53	67	12	0	20	1.22
42165408--42165545	42	3.2	43	64	20	106	28	23	21	25	1.99
42165349--42165703	87	4.1	87	90	0	505	29	22	23	24	1.99
42165907--42166008	44	2.3	44	83	3	125	31	19	28	20	1.97
42165931--42166243	44	7.2	44	69	7	145	30	21	23	24	1.99
42165823--42166243	217	1.9	217	92	0	707	29	20	24	24	1.99
42188040--42188080	15	2.8	14	85	10	55	73	9	9	7	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42192091--42192150	18	3.3	18	76	19	54	26	3	0	70	1.03
42197254--42197287	17	2.0	17	88	0	50	58	2	8	29	1.43
42200491--42200516	3	8.7	3	100	0	52	34	0	34	30	1.58
42203233--42203282	18	2.6	19	81	6	57	20	26	2	52	1.57
42241579--42241604	13	2.0	13	100	0	52	30	15	0	53	1.42
42252245--42252547	40	7.6	40	90	2	387	24	20	28	27	1.99
42256489--42256581	47	2.0	47	97	0	177	43	18	2	36	1.62
42262979--42263098	41	2.9	41	86	2	152	35	25	17	21	1.95
42266148--42266189	3	14.0	3	100	0	84	66	0	0	33	0.92
42266336--42266389	18	2.8	18	77	11	54	77	1	3	16	1.00
42266455--42266530	36	2.1	36	80	11	84	51	1	9	38	1.42
42267669--42268125	169	2.7	168	85	2	592	28	26	16	28	1.97
42268003--42268125	51	2.4	51	84	0	156	32	25	16	26	1.96
42268140--42268894	50	15.1	50	69	1	326	27	22	20	30	1.98
42268107--42268947	100	8.4	100	82	2	855	27	22	20	30	1.98
42268269--42268747	150	3.2	150	86	1	629	26	22	19	30	1.98
42269166--42269264	44	2.2	45	80	5	103	27	24	21	27	1.99
42272022--42272120	44	2.2	45	80	5	103	27	24	21	27	1.99
42281815--42281885	26	2.7	26	77	0	70	22	23	21	32	1.98
42281838--42281888	26	2.0	26	88	0	75	25	21	15	37	1.93
42285820--42285848	15	1.9	15	100	0	58	20	13	27	37	1.91
42292466--42292499	16	2.2	15	89	5	50	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42295119--42295261	40	3.6	40	81	7	166	24	27	23	24	2.00
42302657--42302839	79	2.3	81	83	7	223	24	27	22	24	2.00
42302636--42302839	40	5.1	40	81	8	229	24	27	22	25	2.00
42303968--42304199	56	4.1	56	97	0	428	22	21	9	46	1.80
42305073--42305618	27	20.3	27	77	7	479	41	20	19	18	1.90
42305478--42305622	53	2.7	51	79	11	175	42	19	17	20	1.90
42305471--42305644	54	3.3	51	75	13	163	40	17	20	20	1.91
42305746--42305810	25	2.6	25	97	2	123	15	16	23	44	1.86
42305926--42306042	28	4.2	28	90	3	157	19	20	25	34	1.96
42309145--42309185	16	2.6	16	92	0	64	46	2	2	48	1.28
42318064--42318105	21	1.9	22	90	9	68	52	11	9	26	1.68
42332882--42333027	67	2.2	67	86	0	193	38	14	24	22	1.92
42349674--42349709	16	2.2	16	100	0	72	19	25	36	19	1.95
42351135--42351321	67	2.8	66	90	3	302	49	8	14	27	1.71
42366591--42366621	15	2.1	15	93	0	53	48	0	9	41	1.36
42367382--42367437	29	1.9	29	96	0	103	57	3	0	39	1.16
42369274--42369314	3	13.7	3	100	0	82	65	0	0	34	0.93
42369530--42369571	3	14.7	3	85	9	61	64	0	2	33	1.07
42369992--42370039	19	2.4	20	89	6	71	39	8	14	37	1.76
42370329--42370363	13	2.9	12	91	8	54	17	0	0	82	0.66
42370337--42370395	32	1.9	32	83	10	79	27	1	3	67	1.16
42370739--42370795	30	1.9	30	89	7	89	35	3	3	57	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42370949--42370987	14	2.5	16	88	12	55	20	0	2	76	0.90
42370943--42370987	18	2.6	18	85	3	56	20	0	4	75	0.97
42375937--42376218	44	6.4	44	79	5	291	28	15	26	29	1.96
42375937--42376218	88	3.2	90	82	4	331	28	15	26	29	1.96
42375937--42376218	132	2.1	133	95	0	512	28	15	26	29	1.96
42376206--42376468	88	3.0	88	88	3	352	28	26	23	21	1.99
42376435--42376644	44	4.8	44	88	3	316	26	18	27	28	1.98
42385477--42385517	22	1.9	21	85	5	55	63	9	4	21	1.44
42386596--42386652	19	2.9	19	84	2	69	7	5	5	82	0.95
42387931--42387973	16	2.7	16	86	13	54	20	11	0	67	1.22
42389615--42389676	31	2.0	31	100	0	124	22	29	6	41	1.78
42392633--42392909	138	2.0	138	100	0	554	27	16	20	35	1.94
42396814--42396879	23	2.9	23	88	0	96	31	25	27	15	1.95
42397262--42397298	12	3.1	12	100	0	74	16	24	0	59	1.37
42397263--42397297	18	1.9	18	88	0	52	17	25	0	57	1.40
42402740--42403005	40	6.7	40	90	3	385	25	28	21	24	1.99
42410296--42410380	42	2.0	42	100	0	170	32	9	18	38	1.83
42412585--42412757	45	3.9	45	85	1	233	27	15	24	32	1.95
42412584--42412748	90	1.8	89	89	1	258	27	14	24	32	1.94
42417355--42417430	26	3.0	24	74	14	62	30	18	9	42	1.81
42418951--42419388	218	2.0	218	100	0	876	43	8	19	28	1.80
42419551--42419645	45	2.1	45	86	0	136	26	17	24	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42419720--42419792	37	1.9	37	84	13	96	42	1	23	32	1.63
42423340--42423372	11	2.8	12	90	4	50	15	9	0	75	1.03
42426025--42426063	20	2.0	20	94	0	69	48	23	2	25	1.63
42426607--42426667	25	2.4	25	86	0	77	27	19	26	26	1.99
42431147--42431190	5	8.2	5	85	14	61	20	2	0	77	0.88
42443105--42443281	47	3.8	47	92	0	282	32	7	31	28	1.86
42444672--42444935	40	6.7	40	89	5	360	25	27	21	25	1.99
42448624--42448674	25	2.0	27	84	7	70	50	17	11	19	1.76
42453913--42454099	41	4.6	41	89	1	259	29	21	29	19	1.98
42458006--42458112	54	1.9	53	81	7	124	33	25	8	32	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153