genome.fa.s18.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  92  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29021697--29021778	40	2.0	40	88	0	119	46	2	14	36	1.58
29021762--29021828	27	2.4	27	82	7	82	46	2	19	31	1.65
29021743--29021828	13	6.5	13	71	16	61	47	2	17	32	1.60
29038413--29038516	51	2.0	51	98	0	199	40	17	11	30	1.85
29039612--29039667	23	2.4	24	84	3	69	69	7	17	5	1.31
29040505--29040537	17	2.1	16	88	11	50	42	0	18	39	1.50
29040893--29040996	40	2.6	40	87	3	129	43	2	18	35	1.65
29040918--29040997	13	6.0	13	73	13	65	43	2	17	36	1.63
29041092--29041173	40	2.0	40	85	0	110	47	2	14	35	1.58
29041436--29042491	50	21.1	50	66	6	308	26	19	23	31	1.98
29041222--29042491	100	12.7	100	92	0	1724	25	19	23	31	1.98
29044031--29044092	6	10.7	6	79	10	58	14	4	9	70	1.29
29044778--29044817	7	5.7	7	88	11	64	15	15	0	70	1.18
29044778--29044850	14	5.5	14	73	14	57	13	13	2	69	1.29
29044828--29044873	22	2.1	22	84	8	58	10	2	8	78	1.05
29049921--29049987	12	5.6	12	70	5	55	64	2	5	26	1.31
29051841--29051922	40	2.0	40	88	0	119	46	2	14	36	1.58
29051906--29051972	27	2.4	27	82	7	82	46	2	19	31	1.65
29051887--29051972	13	6.5	13	71	16	61	47	2	17	32	1.60
29068557--29068660	51	2.0	51	98	0	199	40	17	11	30	1.85
29073176--29073255	26	3.0	26	78	14	83	50	2	6	41	1.41
29073176--29073273	28	3.5	28	76	14	87	50	2	6	41	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29073279--29073387	56	1.9	56	83	7	139	48	4	10	36	1.57
29075084--29075391	44	7.2	44	66	14	158	23	21	21	33	1.97
29075074--29075501	128	3.3	128	92	2	698	24	19	21	34	1.96
29075164--29075497	44	7.8	44	66	11	172	25	19	20	33	1.97
29075513--29075694	45	4.0	45	89	0	265	31	28	14	25	1.95
29076708--29076741	16	2.1	16	89	10	52	0	14	2	82	0.79
29077177--29077209	17	1.9	17	93	0	57	6	0	6	87	0.65
29081264--29081327	26	2.5	26	81	0	74	51	1	4	42	1.32
29081285--29081336	26	2.1	25	85	7	70	50	1	5	42	1.37
29089095--29089119	11	2.3	11	100	0	50	68	0	0	32	0.90
29092252--29092305	20	2.7	20	80	5	65	46	11	5	37	1.63
29092243--29092337	40	2.4	40	82	7	104	47	11	6	34	1.65
29092279--29092337	19	2.9	21	71	19	61	44	11	5	38	1.63
29098856--29098907	16	3.2	16	91	0	77	28	0	34	36	1.58
29098888--29098982	45	2.1	44	86	1	127	34	5	26	33	1.79
29099144--29099178	18	2.0	17	88	5	52	54	0	0	45	0.99
29099102--29099174	27	2.7	27	76	8	76	52	2	0	45	1.15
29099291--29099325	18	2.0	17	88	5	52	54	0	0	45	0.99
29099063--29099337	147	1.9	149	96	1	509	46	3	2	47	1.33
29108004--29108063	30	2.0	31	86	3	86	20	40	0	40	1.52
29108479--29108504	5	5.2	5	100	0	52	23	19	19	38	1.93
29109897--29109938	17	2.4	18	88	11	61	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29109897--29109939	14	2.9	14	86	10	50	46	0	0	53	1.00
29110071--29110139	29	2.3	29	85	5	84	49	11	15	23	1.77
29121356--29121432	40	1.9	40	94	0	136	29	11	16	41	1.84
29124937--29124985	24	2.0	24	100	0	98	32	8	28	30	1.86
29127665--29127691	11	2.5	11	100	0	54	92	0	7	0	0.38
29129759--29129833	23	3.3	22	66	17	55	52	4	4	40	1.39
29134621--29134877	113	2.3	110	78	8	272	27	17	19	35	1.94
29134586--29134827	110	2.2	110	80	8	258	28	18	19	33	1.95
29138098--29138166	22	3.1	22	64	15	61	46	13	5	34	1.67
29138065--29138322	44	5.9	44	92	0	399	48	10	3	37	1.54
29139106--29139141	16	2.2	16	90	0	54	72	8	5	13	1.27
29139211--29139245	3	11.7	3	87	0	52	62	0	5	31	1.18
29139426--29139499	27	2.7	27	87	0	94	24	21	36	17	1.95
29139756--29139797	22	1.9	22	95	0	75	71	11	0	16	1.14
29139873--29139985	28	4.0	26	70	17	75	32	2	7	56	1.42
29140847--29140891	18	2.5	18	92	0	72	31	4	48	15	1.65
29143230--29143272	14	3.1	14	96	0	77	53	0	9	37	1.33
29143666--29143718	12	4.4	12	74	9	54	1	26	43	28	1.65
29144821--29145438	308	2.0	308	99	0	1227	27	29	22	19	1.98
29146971--29147127	4	36.8	4	75	22	101	1	28	0	70	0.98
29146966--29147046	23	3.7	21	75	16	67	1	28	0	70	0.95
29146940--29147106	39	4.2	40	77	13	141	1	29	0	68	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29146934--29147126	38	5.2	35	76	18	144	1	28	0	69	0.97
29146965--29147127	41	4.1	39	80	13	149	1	28	0	69	0.98
29148964--29149058	39	2.4	40	78	1	102	41	20	21	17	1.91
29149096--29149358	41	6.4	41	81	2	287	16	24	23	35	1.95
29149097--29149358	82	3.2	82	87	1	337	16	24	23	35	1.94
29149095--29149358	123	2.1	123	81	4	318	16	24	23	35	1.95
29150323--29150401	7	10.4	7	70	15	50	21	1	46	30	1.59
29153074--29153166	21	4.8	18	71	20	55	44	11	0	44	1.41
29153073--29153171	38	2.5	39	83	8	121	44	11	0	44	1.39
29153722--29153786	34	1.9	34	96	0	121	46	10	0	43	1.38
29153758--29153808	22	2.4	22	90	3	86	49	9	0	41	1.36
29153729--29153842	56	2.0	56	98	0	219	47	11	0	41	1.39
29153795--29154046	9	30.2	9	67	20	102	44	15	1	38	1.55
29153834--29153866	16	2.1	16	100	0	66	45	24	0	30	1.53
29153888--29154027	25	5.7	25	74	9	117	44	16	1	37	1.57
29153850--29153938	34	2.6	34	80	3	90	42	15	0	41	1.47
29153791--29153948	84	1.9	84	84	5	212	44	15	0	40	1.46
29154006--29154041	16	2.2	16	95	0	63	52	16	0	30	1.44
29156566--29156611	23	2.0	23	95	0	83	26	15	13	45	1.82
29159532--29159602	21	3.4	21	80	0	79	33	18	45	2	1.64
29159955--29160047	42	2.2	42	83	7	109	22	20	22	34	1.97
29161124--29161157	15	2.2	16	89	5	52	73	0	11	14	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29161166--29161238	5	13.6	5	85	8	92	58	0	23	17	1.38
29161167--29161238	27	2.6	27	87	8	101	58	0	23	18	1.39
29161166--29161235	22	3.2	22	91	2	115	57	0	24	18	1.41
29161725--29161778	25	2.1	26	86	3	74	50	0	11	38	1.38
29161946--29161997	21	2.5	21	93	3	88	61	0	13	25	1.32
29168182--29168230	20	2.5	20	100	0	98	0	10	16	73	1.09
29168746--29168807	31	2.0	31	100	0	124	41	16	9	32	1.80
29170030--29170358	90	3.7	89	84	6	416	52	13	6	27	1.65
29171014--29171343	112	2.9	111	82	7	380	31	21	19	27	1.97
29172364--29172406	9	4.8	9	80	8	52	74	2	2	20	1.04
29172362--29172406	19	2.5	18	79	10	56	75	2	2	20	1.01
29173619--29173658	20	2.0	20	85	9	55	67	2	0	30	1.04
29177799--29177855	27	2.2	26	81	6	69	64	5	1	28	1.25
29183366--29183425	29	2.0	32	83	9	81	50	8	25	16	1.73
29190521--29190572	22	2.4	22	83	3	61	30	42	0	26	1.56
29202254--29202295	21	1.9	23	85	9	61	16	23	35	23	1.95
29205900--29206037	42	3.3	42	91	0	204	31	26	14	28	1.95
29205858--29206036	84	2.1	84	82	8	213	30	24	15	29	1.95
29214446--29214523	29	2.6	30	82	11	81	64	0	23	12	1.28
29219012--29219079	31	2.3	30	87	5	102	48	10	5	35	1.61
29224627--29224680	26	2.2	23	83	9	63	57	5	5	31	1.45
29226344--29226400	2	28.5	2	100	0	114	0	0	49	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29227748--29227790	21	2.0	21	82	8	52	74	2	13	9	1.16
29237060--29237098	18	2.2	18	90	9	62	71	2	20	5	1.17
29238869--29238943	33	2.2	34	85	2	107	36	8	12	44	1.71
29254797--29254827	16	1.9	16	93	0	53	48	9	6	35	1.62
29255009--29255045	19	2.0	19	89	5	58	35	0	8	56	1.29
29255014--29255082	20	3.5	20	82	11	81	36	0	10	53	1.35
29263120--29263159	19	2.2	18	86	8	55	55	2	5	37	1.35
29263027--29263297	131	2.1	130	85	0	353	44	6	14	33	1.72
29270734--29270771	10	3.9	10	79	6	51	57	2	0	39	1.12
29272216--29272371	43	3.7	41	76	11	147	22	16	29	31	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153