genome.fa.s18.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  97  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30727014--30727055	15	2.7	16	82	14	52	52	2	0	45	1.13
30727023--30727064	15	2.9	15	82	10	52	52	0	0	47	1.00
30726835--30727165	157	2.1	154	79	7	337	47	3	3	45	1.37
30727230--30727277	26	1.9	25	84	16	64	52	2	0	45	1.12
30727185--30727413	92	2.5	92	83	8	236	47	3	3	44	1.38
30730563--30730644	37	2.2	37	93	0	137	36	8	14	40	1.77
30733794--30733819	5	5.2	5	100	0	52	80	0	19	0	0.71
30734398--30734448	16	3.1	16	85	2	66	23	15	0	60	1.35
30734453--30734547	17	4.9	19	79	17	67	21	10	1	67	1.27
30734467--30734525	16	3.6	16	84	11	75	20	10	1	67	1.28
30734472--30734525	17	3.1	17	84	12	74	18	11	1	68	1.28
30734494--30734560	22	2.9	22	78	13	64	22	10	1	65	1.31
30734452--30734561	40	2.8	39	72	25	97	22	10	0	66	1.27
30734504--30734576	23	3.2	22	81	16	78	21	12	1	64	1.35
30736755--30737108	89	4.0	87	76	14	321	57	12	5	24	1.56
30753561--30754021	44	10.5	44	65	16	213	32	19	23	24	1.97
30753563--30754095	132	4.0	132	94	0	877	32	19	24	24	1.98
30754840--30754881	13	3.2	13	83	13	50	7	7	4	80	1.00
30754845--30754882	20	1.9	20	88	0	58	5	10	2	81	0.94
30755934--30755979	22	2.1	22	91	0	74	10	21	26	41	1.86
30756242--30756685	43	10.3	43	79	3	473	29	31	17	21	1.96
30756242--30756666	86	4.9	86	93	1	708	28	31	17	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30756991--30757089	21	4.7	21	83	0	108	6	41	18	34	1.75
30757110--30757239	65	2.0	65	84	4	172	12	26	20	41	1.87
30762647--30762777	9	15.9	9	69	16	70	35	3	16	44	1.64
30762652--30762771	16	7.9	16	66	19	78	35	2	16	45	1.61
30762668--30762785	25	4.8	25	69	8	89	35	2	16	45	1.61
30762842--30762876	13	2.7	13	95	0	61	40	0	8	51	1.33
30762857--30762917	22	2.8	22	100	0	122	40	0	11	47	1.40
30763013--30763051	13	2.7	15	88	11	55	33	0	20	46	1.51
30763013--30763088	16	4.8	16	78	10	68	34	1	17	47	1.56
30765674--30765710	10	3.7	10	92	0	65	43	13	0	43	1.44
30766690--30766720	16	2.0	15	93	6	53	51	25	6	16	1.68
30766704--30766918	89	2.4	89	99	0	421	34	25	13	26	1.93
30767546--30767583	15	2.5	15	86	0	58	36	44	0	18	1.50
30770928--30770958	16	2.0	15	93	6	53	51	25	6	16	1.68
30771692--30771759	15	4.9	14	71	16	52	41	36	0	22	1.54
30771695--30771732	15	2.5	15	86	0	58	36	44	0	18	1.50
30774618--30774652	18	2.0	17	88	5	52	45	0	0	54	0.99
30774631--30774914	61	4.7	59	67	15	188	43	2	4	49	1.36
30774742--30774903	15	10.9	15	67	21	58	44	1	3	50	1.30
30774605--30774914	120	2.6	120	94	0	539	43	1	4	50	1.34
30774871--30774912	15	2.7	16	82	14	52	45	0	2	52	1.13
30775129--30775196	16	4.2	16	96	0	127	36	36	0	26	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30775752--30775972	41	5.4	40	71	8	149	38	23	23	14	1.92
30775781--30775991	41	5.2	40	73	10	160	36	23	24	14	1.93
30775733--30776013	82	3.4	80	79	9	284	37	23	23	15	1.93
30787010--30787087	38	2.0	39	95	2	140	65	3	23	7	1.35
30789779--30789817	19	2.1	19	95	0	69	46	5	12	35	1.65
30792666--30792727	21	3.0	21	78	0	79	43	17	22	16	1.87
30792662--30792784	42	2.9	42	77	4	122	41	20	19	18	1.91
30794320--30794742	94	4.5	94	80	2	456	26	19	19	35	1.95
30794677--30794784	44	2.5	44	84	6	130	27	18	20	33	1.96
30799849--30799919	34	2.1	34	100	0	142	43	18	0	38	1.50
30800012--30800153	29	4.9	29	82	1	131	23	26	13	37	1.91
30800012--30800153	59	2.4	58	83	3	169	23	26	13	37	1.91
30802993--30803019	14	1.9	14	100	0	54	44	3	22	29	1.70
30807804--30807883	10	8.6	9	75	15	56	35	3	1	60	1.23
30807804--30807883	19	4.3	18	70	19	65	35	3	1	60	1.23
30807805--30807929	19	6.8	17	69	17	56	32	3	1	62	1.21
30808020--30808236	89	2.5	88	81	8	248	35	8	19	37	1.82
30808355--30808385	15	2.1	15	100	0	62	38	6	32	22	1.80
30808543--30808581	18	2.3	17	86	8	53	38	5	12	43	1.65
30809323--30809352	15	2.0	15	93	0	51	23	6	46	23	1.75
30812714--30812744	15	2.1	15	100	0	62	38	6	32	22	1.80
30812902--30812940	18	2.3	17	86	8	53	38	5	12	43	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30817693--30817782	45	2.0	44	86	2	126	33	4	27	34	1.77
30817693--30817799	45	2.5	43	82	8	123	34	3	28	32	1.75
30817947--30817981	18	2.0	17	88	5	52	54	0	0	45	0.99
30817841--30818150	157	2.0	157	97	0	584	44	2	4	47	1.38
30818084--30818125	15	2.7	16	82	14	52	52	2	0	45	1.13
30818093--30818134	15	2.9	15	82	10	52	52	0	0	47	1.00
30818082--30818379	120	2.5	121	93	3	512	50	4	2	42	1.37
30818203--30818254	15	3.6	15	80	12	56	53	1	0	44	1.11
30818420--30818480	28	2.2	28	85	5	81	50	3	0	45	1.17
30818427--30818570	45	3.1	46	64	23	104	48	4	2	44	1.36
30818395--30818602	91	2.3	90	89	4	317	46	4	3	45	1.41
30818420--30818562	44	3.2	43	66	20	103	47	3	2	46	1.34
30818445--30818583	47	3.0	46	68	17	126	48	4	2	43	1.37
30821742--30821767	13	2.0	13	100	0	52	53	7	0	38	1.30
30823570--30823654	43	2.0	43	95	0	152	56	18	14	10	1.66
30839387--30839428	19	2.2	19	83	8	50	33	4	21	40	1.74
30840819--30840867	24	2.0	24	100	0	98	46	4	8	40	1.52
30841609--30841649	14	2.9	14	85	0	55	41	12	2	43	1.55
30842267--30842335	28	2.4	29	90	2	104	14	33	0	52	1.42
30843674--30843903	79	2.9	79	86	2	302	27	9	18	44	1.80
30844706--30844730	13	1.9	13	100	0	50	0	8	24	68	1.16
30846823--30846863	21	2.0	21	100	0	82	29	19	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30849206--30849231	13	2.0	13	100	0	52	46	0	0	53	1.00
30851844--30851870	11	2.5	11	100	0	54	33	11	11	44	1.75
30858847--30858873	14	1.9	14	100	0	54	33	7	14	44	1.73
30865352--30865477	22	5.3	24	80	10	127	38	21	25	15	1.92
30866541--30866627	41	2.1	41	81	8	97	56	5	0	37	1.23
30871787--30871878	21	4.3	21	74	16	73	63	7	0	29	1.22
30871821--30871884	11	6.2	10	72	16	51	60	7	0	31	1.25
30876249--30876287	20	1.9	21	89	5	62	51	0	10	38	1.36
30885043--30885098	21	2.7	21	78	13	53	41	7	1	50	1.40
30885597--30885697	32	3.3	31	71	19	95	24	9	6	58	1.55
30886191--30886220	7	4.3	7	100	0	60	26	0	60	13	1.34
30890513--30890554	15	2.8	15	88	0	66	38	7	0	54	1.28
30891897--30891930	16	2.1	16	88	0	50	20	14	20	44	1.87
30900055--30900815	381	2.0	381	95	0	1380	34	13	25	25	1.94
30902982--30903282	44	6.8	43	67	14	157	31	19	23	24	1.98
30902999--30903511	132	3.9	131	85	3	670	30	18	24	25	1.98
30903036--30903538	266	1.9	266	86	4	712	30	18	23	26	1.98
30904852--30904883	13	2.5	13	94	0	55	37	6	0	56	1.25
30916656--30916748	49	1.9	49	84	6	127	51	13	20	13	1.75
30923903--30923933	15	2.1	15	93	0	53	38	19	9	32	1.84
30941361--30941403	18	2.4	18	88	7	61	30	34	4	30	1.78
30944750--30944823	22	3.3	21	74	12	60	44	20	18	16	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30944815--30945014	32	6.3	32	84	0	231	37	17	21	24	1.94
30944815--30945014	64	3.1	64	86	0	258	37	17	21	24	1.94
30944815--30945014	96	2.1	95	86	0	274	37	17	21	24	1.94
30945023--30945073	26	2.0	26	84	0	66	37	23	23	15	1.93
30945055--30945120	27	2.5	26	80	9	71	34	22	22	19	1.96
30945199--30945287	24	3.7	24	84	3	117	44	21	6	26	1.77
30945305--30945745	27	16.4	27	81	2	449	24	21	19	34	1.97
30945565--30945797	80	2.9	81	78	6	190	24	18	18	37	1.93
30945759--30945848	43	2.1	43	81	8	103	23	13	14	48	1.79
30945798--30945868	27	2.6	27	82	4	81	25	12	12	49	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153