genome.fa.s18.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  54  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17683907--17683965	17	3.6	16	76	19	59	30	1	0	67	1.00
17683901--17683965	33	2.0	33	85	11	89	30	1	0	67	1.00
17692593--17692627	16	2.1	17	94	5	63	11	11	0	77	1.00
17700373--17700408	16	2.2	16	100	0	72	25	0	36	38	1.56
17700622--17700679	16	3.6	16	78	21	52	53	1	0	44	1.10
17700645--17700679	18	2.0	17	88	5	52	54	0	0	45	0.99
17700532--17700848	157	2.0	157	95	0	571	44	3	5	47	1.43
17700791--17700832	15	2.9	15	82	10	52	52	0	0	47	1.00
17700922--17700956	18	2.0	17	88	5	52	54	0	0	45	0.99
17701852--17704612	920	3.0	920	98	0	5414	30	17	16	36	1.92
17704768--17704818	23	2.2	23	89	0	75	29	9	19	41	1.84
17714597--17714629	17	1.9	17	88	11	50	45	3	0	51	1.16
17714789--17714826	21	1.9	21	84	10	53	28	7	0	63	1.23
17720724--17720748	12	2.1	12	100	0	50	36	24	32	8	1.84
17729502--17729527	7	3.7	7	100	0	52	0	0	11	88	0.52
17740561--17740614	26	2.1	27	83	13	69	31	5	1	61	1.30
17741825--17741850	12	2.2	12	100	0	52	30	7	15	46	1.74
17743230--17743257	13	2.2	13	100	0	56	53	14	0	32	1.41
17743951--17743976	5	5.2	5	100	0	52	57	19	23	0	1.40
17745959--17746028	19	3.6	19	82	5	88	57	5	1	35	1.32
17745999--17746064	27	2.4	27	77	7	71	57	3	0	39	1.14
17745999--17746065	18	3.7	18	67	16	50	58	2	0	38	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17745958--17746076	20	6.2	20	74	9	79	57	5	0	36	1.27
17766534--17766626	48	1.9	48	91	4	152	22	25	13	37	1.92
17772872--17772924	24	2.2	24	82	0	70	20	41	1	35	1.64
17774296--17774336	17	2.4	18	84	11	52	34	0	2	63	1.08
17776503--17776627	42	3.0	42	82	6	130	46	15	21	16	1.84
17786316--17786728	204	2.0	204	94	0	718	18	32	14	35	1.91
17788017--17788055	18	2.1	19	86	13	55	43	0	2	53	1.14
17788757--17788785	15	1.9	15	100	0	58	51	0	0	48	1.00
17788757--17788801	15	3.1	15	78	18	51	51	0	0	48	1.00
17789437--17789495	30	2.0	30	96	0	109	54	13	3	28	1.55
17789534--17789573	11	3.6	11	82	0	53	60	10	10	20	1.57
17789535--17789582	22	2.2	22	81	7	53	62	6	14	16	1.51
17790329--17790371	18	2.2	20	88	8	63	53	11	0	34	1.37
17791319--17791404	21	4.3	21	66	24	60	38	6	3	51	1.46
17791279--17791404	58	2.2	58	94	1	218	39	6	3	50	1.44
17791915--17792197	127	2.3	124	94	3	496	29	15	20	34	1.94
17795336--17795592	30	9.0	26	81	12	121	30	0	22	46	1.55
17795322--17797109	29	59.8	29	85	10	2342	29	0	24	45	1.57
17795603--17796230	30	22.0	24	71	26	241	29	0	24	46	1.53
17799412--17799473	29	2.2	28	80	5	72	43	14	16	25	1.86
17801204--17801234	3	10.3	3	92	0	53	70	0	0	29	0.87
17801203--17801232	15	2.0	15	100	0	60	73	0	0	26	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17801530--17801591	31	2.0	31	100	0	124	41	16	9	32	1.80
17807831--17807947	60	2.0	60	94	0	207	28	18	18	34	1.95
17809857--17809921	29	2.2	29	88	0	94	72	13	10	3	1.23
17814488--17814594	54	2.0	54	98	0	205	27	17	26	28	1.98
17815567--17815727	80	2.0	80	98	0	313	18	8	22	49	1.75
17815887--17816043	85	1.8	85	95	0	287	22	11	8	57	1.61
17816374--17816402	15	1.9	15	100	0	58	34	13	6	44	1.71
17818168--17818203	3	12.0	3	100	0	72	66	0	0	33	0.92
17820232--17820272	19	2.1	20	86	4	57	63	7	0	29	1.21
17823126--17823154	14	2.1	14	100	0	58	65	6	0	27	1.18
17830168--17830298	41	3.1	41	76	11	122	28	14	25	32	1.95
17830750--17831545	2	398.0	2	100	0	1592	50	0	0	50	1.00
17832596--17832680	25	3.5	24	68	16	66	64	9	9	16	1.48
17839117--17839196	34	2.4	33	75	8	81	25	3	3	67	1.24
17839256--17839289	18	1.9	18	88	5	52	44	0	5	50	1.26
17841070--17841540	125	3.8	126	95	1	813	29	16	21	31	1.96
17844573--17845042	116	4.1	116	97	0	850	43	8	9	38	1.68
17845049--17845122	29	2.6	29	89	4	114	31	1	21	45	1.60
17845094--17845141	25	2.0	25	84	12	64	25	0	29	45	1.53
17845101--17845357	23	10.7	23	67	25	92	27	0	25	45	1.59
17845271--17845330	29	2.1	29	96	0	111	25	0	26	48	1.52
17845353--17845585	25	9.7	25	75	15	224	44	13	0	41	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17845353--17845585	70	3.3	70	92	5	362	44	13	0	41	1.49
17845553--17845638	43	2.0	45	90	4	140	50	12	0	37	1.41
17846061--17846095	18	1.9	18	94	0	61	34	8	31	25	1.86
17847945--17848000	22	2.5	22	97	2	103	39	0	32	28	1.57
17864510--17864547	20	1.9	20	89	10	60	23	10	10	55	1.65
17873276--17873349	32	2.3	32	90	2	112	44	32	12	10	1.76
17876785--17876830	23	2.0	23	82	4	56	54	8	2	34	1.43
17876818--17877065	119	2.1	120	97	0	471	46	5	2	45	1.38
17877529--17877561	14	2.3	15	89	5	50	39	15	0	45	1.46
17882633--17882694	32	1.9	32	83	6	81	41	14	14	29	1.85
17888215--17888245	16	1.9	16	93	0	53	9	9	9	70	1.33
17891211--17891323	41	2.8	41	88	0	163	32	23	22	21	1.98
17902468--17902557	25	3.6	25	77	5	74	34	16	28	20	1.94
17904156--17904346	51	3.8	51	78	8	210	31	27	16	24	1.96
17904154--17904338	101	1.8	102	88	3	284	32	26	17	23	1.97
17908675--17908817	66	2.2	66	97	0	268	20	8	25	44	1.80
17916458--17916570	42	2.7	42	82	2	131	45	18	21	15	1.86
17916494--17916565	21	3.4	21	66	0	63	47	16	20	15	1.83
17916478--17916611	42	3.2	42	81	0	124	44	15	21	17	1.86
17924441--17924809	46	8.0	46	92	0	605	29	25	8	36	1.86
17924441--17924809	92	4.0	92	97	0	677	29	25	8	36	1.86
17926010--17926057	17	2.9	17	90	3	71	54	18	0	27	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17941031--17941088	25	2.3	26	75	3	64	55	6	6	31	1.53
17941829--17941908	42	1.9	42	94	0	142	28	32	22	16	1.95
17953546--17953688	71	2.0	71	97	0	268	41	12	11	34	1.79
17953634--17953871	118	2.0	118	96	0	440	39	15	15	29	1.88
17953871--17954063	95	2.0	96	95	1	352	34	10	17	36	1.85
17954166--17954375	104	2.0	104	95	0	375	33	14	16	35	1.89
17960347--17960406	21	2.7	22	75	12	61	63	5	1	30	1.25
17966911--17966957	23	2.0	24	84	12	62	42	0	8	48	1.33
17973698--17973737	20	2.0	21	90	5	64	20	30	20	30	1.97
17975446--17975599	45	3.4	45	93	0	254	36	18	20	25	1.95
17976487--17976608	5	24.4	5	100	0	244	40	0	0	59	0.97
17976634--17976688	16	3.6	15	83	11	67	74	3	18	3	1.11
17976634--17976688	14	3.6	14	77	15	56	74	3	18	3	1.11
17977633--17977692	26	2.3	27	80	8	70	15	23	25	36	1.93
17977744--17977909	24	6.8	25	70	12	94	21	25	19	32	1.97
17977646--17977823	72	2.4	73	76	7	164	18	24	21	35	1.96
17983501--17983610	22	5.0	22	73	4	96	46	22	19	11	1.82
17993485--17993516	4	8.0	4	92	0	55	25	3	0	71	1.00
18005178--18005482	82	3.7	82	86	2	380	16	22	22	38	1.93
18005179--18005420	123	2.0	123	80	4	274	16	23	21	38	1.92
18005180--18005439	41	6.3	41	76	6	240	15	22	22	39	1.92
18007040--18007119	40	2.0	40	97	0	151	36	17	11	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18007930--18007966	10	3.7	10	92	0	65	43	0	13	43	1.44
18008034--18008085	27	1.9	27	88	0	77	40	0	9	50	1.35
18009270--18009306	11	3.4	11	96	0	65	37	2	5	54	1.38
18009529--18009561	14	2.3	15	94	5	59	6	21	12	60	1.53
18012433--18012478	22	2.1	22	95	0	83	47	10	0	41	1.38
18012399--18012624	56	4.0	56	92	2	382	47	10	2	40	1.50
18012455--18012730	34	7.9	34	69	17	138	45	12	1	40	1.51
18012484--18012534	22	2.4	22	90	3	86	49	9	0	41	1.36
18012545--18012590	22	2.1	22	95	0	83	47	10	0	41	1.38
18012614--18012844	25	9.3	24	69	17	77	43	17	1	37	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153