genome.fa.s18.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  62  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19991975--19992020	21	2.2	21	80	3	58	47	6	2	43	1.41
19991985--19992030	8	6.1	8	80	14	53	52	2	0	45	1.13
19991985--19992029	21	2.1	21	87	0	63	51	2	0	46	1.13
19997869--19997905	14	2.6	14	91	0	65	51	0	10	37	1.37
19998257--19998359	38	2.6	39	74	7	102	23	20	26	30	1.99
20000428--20000550	42	2.9	43	93	2	212	32	26	13	26	1.94
20004255--20004588	170	2.0	170	89	3	512	38	18	9	32	1.84
20008024--20008087	31	2.1	31	93	0	110	32	20	7	39	1.81
20009693--20009751	30	1.9	31	89	3	93	28	20	1	49	1.59
20019538--20019611	38	1.9	38	83	5	96	31	10	18	39	1.86
20020227--20020269	4	11.0	4	80	5	52	69	0	2	27	1.00
20020209--20020279	27	2.6	27	88	8	99	67	2	1	28	1.13
20020592--20020634	15	2.9	15	86	10	54	67	4	0	27	1.10
20021065--20021089	2	12.5	2	100	0	50	48	0	0	52	1.00
20021868--20021941	30	2.5	30	84	8	98	44	0	5	50	1.25
20022408--20022446	20	2.0	20	85	10	53	46	5	0	48	1.24
20034805--20034927	44	2.9	44	82	3	135	34	21	18	26	1.96
20034844--20034935	44	2.1	44	91	4	150	32	21	22	22	1.98
20035064--20035095	13	2.5	13	100	0	64	50	21	0	28	1.49
20035365--20035398	17	1.9	18	94	5	61	2	17	0	79	0.86
20035480--20035509	3	10.0	3	92	0	51	63	0	0	36	0.95
20035753--20035795	20	2.2	20	87	8	61	51	2	0	46	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20043080--20043116	18	2.1	17	90	5	56	8	18	0	72	1.08
20043080--20043116	14	2.7	14	88	12	51	8	18	0	72	1.08
20043138--20043182	3	15.0	3	100	0	90	66	0	0	33	0.92
20043377--20043413	18	2.1	17	90	5	56	8	18	0	72	1.08
20043377--20043413	14	2.7	14	88	12	51	8	18	0	72	1.08
20043435--20043479	3	15.0	3	100	0	90	66	0	0	33	0.92
20043031--20043626	297	2.0	297	100	0	1192	34	12	2	50	1.54
20043723--20043772	16	3.2	16	78	13	59	58	0	6	36	1.23
20043898--20043928	10	3.1	10	95	0	53	45	0	0	54	0.99
20048499--20048544	20	2.3	20	82	14	60	26	30	17	26	1.97
20051346--20051412	34	1.9	35	85	8	93	19	23	11	44	1.84
20052468--20052587	60	2.0	61	83	6	154	26	25	19	29	1.98
20061559--20061700	69	2.0	69	82	6	171	22	22	21	33	1.98
20065259--20065284	13	2.0	13	100	0	52	53	0	15	30	1.42
20066182--20066208	4	6.8	4	100	0	54	22	0	0	77	0.76
20070189--20070232	23	1.9	23	100	0	88	34	18	18	29	1.94
20072785--20072980	100	2.0	100	97	0	374	33	19	14	32	1.92
20074347--20074385	19	2.1	19	85	9	53	56	5	0	38	1.22
20074726--20074778	25	2.2	23	86	6	70	30	0	1	67	1.01
20078125--20078155	12	2.6	12	94	0	53	0	25	0	74	0.82
20078235--20078265	16	1.9	16	93	0	53	54	3	0	41	1.16
20078522--20078552	15	2.1	14	94	5	53	54	6	3	35	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20078539--20078607	21	3.4	20	71	16	70	55	7	1	36	1.37
20085786--20085815	11	2.6	12	94	5	53	0	23	0	76	0.78
20087468--20087553	3	28.0	3	73	13	50	54	2	10	32	1.47
20087469--20087535	20	3.6	19	75	15	59	55	0	11	32	1.37
20090699--20090816	43	2.7	43	83	7	125	29	25	18	26	1.98
20090745--20090837	43	2.2	43	80	7	100	32	24	16	26	1.96
20095364--20095401	20	1.9	20	88	0	58	63	0	2	34	1.09
20095588--20095621	18	1.9	18	88	5	52	44	2	2	50	1.32
20099551--20099633	43	1.9	43	87	0	121	57	12	15	14	1.65
20101684--20101722	20	1.9	19	85	10	51	53	15	7	23	1.67
20105285--20105323	19	2.1	19	100	0	78	30	15	20	33	1.94
20105304--20105555	79	3.2	79	89	1	371	18	19	24	37	1.94
20108175--20108239	19	3.2	21	67	20	57	12	27	21	38	1.89
20108157--20108257	39	2.6	39	90	0	157	12	27	23	35	1.92
20110567--20110694	46	2.8	46	97	0	238	19	25	29	25	1.98
20124493--20124655	3	53.0	3	71	18	97	33	1	3	61	1.22
20124818--20124875	24	2.5	22	78	13	64	25	3	5	65	1.29
20136672--20137114	153	2.9	152	88	5	651	31	16	19	33	1.94
20136672--20137114	75	5.8	76	83	5	534	31	16	19	33	1.94
20138951--20139089	3	46.0	3	69	21	62	33	2	2	61	1.23
20138943--20139000	9	6.3	9	82	9	64	37	3	0	58	1.15
20138943--20139089	18	8.2	18	73	19	80	34	2	2	60	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20139239--20139267	14	2.0	15	93	6	51	20	3	0	75	0.94
20145754--20145787	15	2.3	15	89	0	50	50	11	2	35	1.54
20146307--20146372	3	22.0	3	100	0	132	66	0	0	33	0.92
20151481--20151540	29	2.0	30	87	3	86	25	8	31	35	1.85
20151825--20151861	12	2.9	13	88	8	58	5	10	0	83	0.79
20155539--20155983	224	2.0	225	96	0	820	44	16	13	25	1.84
20160550--20160626	40	1.9	41	84	7	104	48	1	6	44	1.37
20163419--20163503	27	3.1	26	73	15	73	30	4	1	63	1.22
20163455--20163525	19	3.7	18	78	9	70	25	5	2	66	1.27
20163381--20163533	56	2.7	56	79	9	168	26	7	2	62	1.36
20163315--20163979	340	2.0	339	97	0	1260	33	4	5	56	1.42
20163759--20163835	19	4.2	19	74	14	63	31	5	1	62	1.25
20163768--20163863	9	10.3	9	69	18	63	26	4	2	67	1.19
20163794--20163863	19	3.7	19	75	5	61	25	2	2	68	1.17
20163774--20163854	28	2.9	27	78	8	81	27	4	2	65	1.26
20163937--20163963	12	2.2	12	100	0	54	14	0	7	77	0.97
20169551--20169607	30	1.9	30	82	13	73	45	3	0	50	1.18
20171039--20171086	24	2.0	24	100	0	96	33	25	8	33	1.86
20174472--20174531	27	2.2	27	88	5	86	43	16	20	20	1.88
20181261--20181293	15	2.3	15	89	5	50	48	6	0	45	1.27
20184635--20184716	42	2.0	42	85	0	110	31	24	13	30	1.93
20184677--20184983	47	6.5	47	94	1	492	31	25	14	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20189278--20189342	32	2.0	32	100	0	130	40	12	10	36	1.78
20190751--20190806	28	2.0	28	93	6	96	37	26	3	32	1.74
20190755--20190818	28	2.3	29	83	5	78	40	28	3	28	1.71
20203920--20203996	36	2.5	28	71	28	82	53	7	7	31	1.58
20204258--20204305	24	2.0	24	95	0	87	52	16	18	12	1.75
20205517--20205984	117	4.0	117	97	0	857	38	13	30	17	1.88
20214745--20214792	23	2.1	23	88	7	71	43	6	0	50	1.27
20215389--20215428	21	1.9	21	90	10	64	40	5	10	45	1.60
20216350--20216470	62	2.0	62	89	0	188	23	28	26	21	1.99
20235341--20235386	19	2.4	18	79	10	56	23	21	10	43	1.84
20239813--20239909	45	2.2	46	90	3	153	30	18	22	27	1.97
20239681--20240216	177	3.0	177	91	1	880	30	19	22	27	1.97
20240055--20240348	130	2.2	132	92	1	484	29	19	21	28	1.98
20239877--20240504	307	2.0	310	92	0	1055	30	18	21	29	1.97
20240185--20240504	177	1.8	178	90	0	525	30	18	20	30	1.97
20240475--20240696	44	5.1	44	67	16	142	35	22	22	19	1.96
20240499--20240702	84	2.4	84	86	5	268	34	22	23	19	1.96
20242949--20242993	22	2.0	22	95	0	81	48	11	0	40	1.39
20243878--20243945	27	2.4	27	78	4	73	42	32	4	20	1.72
20244488--20244610	51	2.4	52	87	2	169	27	21	11	39	1.87
20245468--20245517	16	3.1	16	79	2	55	58	0	0	42	0.98
20246492--20246529	20	1.9	19	89	5	58	36	0	5	57	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20246837--20246899	9	7.6	9	69	26	50	23	0	19	57	1.41
20246838--20246899	27	2.5	25	87	10	83	24	0	19	56	1.42
20255763--20255986	104	2.2	104	93	1	378	17	19	31	31	1.95
20255905--20256056	71	2.1	72	92	1	252	23	17	29	30	1.97
20262223--20262252	15	2.0	15	100	0	60	26	6	0	66	1.16
20262557--20262643	41	2.2	40	82	2	102	66	5	1	26	1.21
20262626--20262697	27	2.6	26	77	12	72	63	0	5	30	1.17
20262659--20262700	23	2.0	22	86	13	61	64	0	4	30	1.14
20266925--20266963	17	2.3	17	95	0	69	30	0	15	53	1.42
20272577--20272614	20	1.9	20	88	0	58	36	2	10	50	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153