genome.fa.s18.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  145  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45324262--45324301	13	3.1	13	88	0	62	10	10	5	75	1.19
45325289--45325322	17	2.0	17	88	11	52	64	0	14	20	1.28
45328205--45328254	24	2.1	24	100	0	100	24	24	20	32	1.98
45329073--45329107	17	2.1	17	100	0	70	11	34	25	28	1.91
45329374--45329532	78	2.0	78	97	0	300	41	11	10	35	1.77
45335891--45335944	25	2.2	25	82	0	63	29	20	14	35	1.93
45335905--45335953	25	2.0	25	91	0	80	32	16	14	36	1.89
45336123--45336170	25	1.9	25	95	0	87	37	29	6	27	1.81
45336832--45336870	18	2.0	20	85	9	55	48	10	12	28	1.74
45341291--45341339	22	2.2	22	82	7	64	73	0	4	22	1.00
45341525--45341579	27	2.1	25	83	6	65	58	10	10	20	1.62
45345611--45345670	29	2.0	30	84	9	79	41	11	28	18	1.85
45345660--45345791	30	4.5	30	69	20	82	39	10	28	21	1.87
45353054--45353466	30	13.8	30	79	7	342	38	14	23	23	1.91
45353229--45353453	89	2.5	89	94	0	378	40	14	24	20	1.90
45353196--45353497	119	2.5	117	80	7	290	40	15	22	21	1.91
45357272--45357337	17	3.8	17	73	13	62	60	18	0	21	1.36
45367525--45367715	41	4.7	41	82	7	228	34	20	23	21	1.97
45367718--45367823	42	2.5	42	85	0	149	23	14	23	38	1.91
45369608--45369661	24	2.2	24	90	3	81	18	9	25	46	1.79
45371359--45371486	52	2.5	52	88	3	188	28	31	13	26	1.94
45373389--45373652	40	6.7	40	89	5	360	25	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45381619--45381880	39	6.7	40	88	7	337	24	27	22	25	2.00
45385241--45385443	27	7.5	27	83	3	239	42	20	19	17	1.89
45385289--45385464	27	6.5	26	85	5	174	40	21	22	15	1.91
45385276--45385464	81	2.3	81	83	5	213	39	21	22	16	1.92
45387055--45387346	50	5.8	50	74	8	209	28	21	26	23	1.99
45387055--45387296	100	2.4	101	80	8	251	27	21	27	23	1.99
45387545--45387583	12	3.2	12	85	0	51	51	5	23	20	1.67
45388661--45388730	28	2.5	28	90	2	115	21	30	22	25	1.99
45389840--45390026	50	3.6	50	79	5	169	27	20	28	22	1.99
45390275--45390313	12	3.2	12	85	0	51	51	5	23	20	1.67
45390276--45390319	20	2.2	20	87	0	61	52	4	25	18	1.64
45391396--45391460	33	2.0	33	81	6	78	24	26	24	24	2.00
45393535--45393576	20	2.1	20	91	8	68	7	23	0	69	1.13
45395856--45395936	25	3.3	24	74	8	74	46	7	19	25	1.76
45401560--45401620	17	3.4	17	76	12	59	70	1	8	19	1.21
45401777--45401827	26	1.9	26	84	11	68	54	15	1	27	1.52
45401787--45401841	27	2.1	25	83	6	65	58	9	5	27	1.51
45405860--45406253	30	13.2	30	75	9	156	39	12	24	23	1.89
45406041--45406181	29	4.8	29	88	1	210	40	14	28	17	1.88
45406041--45406182	59	2.4	58	89	1	212	40	14	28	17	1.88
45406041--45406201	59	2.8	58	86	3	200	40	12	28	18	1.87
45406003--45406229	88	2.6	88	80	10	275	39	12	25	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45413665--45413989	30	10.8	30	76	5	201	40	12	23	23	1.89
45413742--45413980	89	2.7	90	84	7	306	42	13	21	21	1.88
45423874--45424024	54	2.8	53	81	3	196	33	18	20	27	1.96
45424206--45424272	29	2.3	29	86	0	89	19	11	23	44	1.84
45429922--45430000	41	1.9	41	94	0	140	21	30	18	29	1.97
45441308--45441493	50	3.7	50	81	3	198	22	27	23	26	1.99
45446098--45446448	47	7.4	47	95	1	603	29	29	7	32	1.86
45451886--45452125	50	4.7	50	78	4	214	23	28	21	26	1.99
45453726--45453804	35	2.3	35	85	8	101	45	0	5	49	1.24
45454333--45454365	16	2.0	17	94	5	59	72	0	27	0	0.85
45455304--45455404	45	2.2	45	84	10	136	21	18	17	41	1.90
45455389--45455433	19	2.4	19	88	7	65	20	17	13	48	1.80
45459706--45459764	25	2.3	26	80	8	68	30	23	18	27	1.98
45459964--45460015	26	2.0	26	82	14	63	38	5	19	36	1.76
45466975--45467021	6	7.8	6	95	0	76	0	0	19	80	0.70
45466975--45467040	18	3.7	17	78	11	62	4	0	13	81	0.83
45467025--45467079	10	5.7	10	78	8	51	18	1	9	70	1.22
45468055--45468199	70	2.1	70	89	1	218	25	11	13	50	1.74
45473354--45473459	29	3.8	28	76	9	83	39	23	12	24	1.89
45483262--45483376	3	38.3	3	71	13	67	57	3	7	31	1.44
45485909--45485956	20	2.4	20	85	0	60	22	31	14	31	1.94
45485922--45485967	20	2.3	20	88	0	74	15	30	19	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45501495--45501537	20	2.2	20	87	8	61	16	18	4	60	1.52
45502174--45502265	25	3.7	25	80	8	89	29	19	23	27	1.98
45502219--45502272	25	2.2	25	86	0	72	38	18	20	22	1.93
45502219--45502284	25	2.6	24	81	9	69	40	16	19	22	1.91
45503200--45503231	5	6.4	5	100	0	64	18	0	0	81	0.70
45504671--45504729	29	2.0	29	86	0	82	22	10	23	44	1.83
45507730--45507807	29	2.7	28	84	11	104	25	15	30	28	1.96
45507760--45508087	174	1.9	174	98	0	629	29	14	25	30	1.95
45523382--45523440	21	2.8	21	89	5	84	28	13	30	27	1.94
45528892--45528928	9	4.1	9	89	0	56	29	10	10	48	1.72
45533865--45533946	23	3.5	23	80	5	85	31	10	17	40	1.84
45533912--45533958	23	2.0	23	84	8	60	38	10	17	34	1.84
45547139--45547176	20	1.9	20	84	10	51	23	10	0	65	1.23
45547251--45547315	10	7.3	9	72	14	55	30	1	0	67	1.00
45547275--45547323	26	1.9	25	83	4	62	30	4	0	65	1.11
45547671--45547709	21	1.9	20	89	5	60	30	0	2	66	1.05
45549736--45549777	8	4.9	8	86	13	57	26	4	0	69	1.08
45549736--45549794	25	2.3	26	82	11	68	27	6	1	64	1.28
45554141--45554364	50	4.5	50	75	2	171	25	23	20	29	1.99
45554522--45555249	132	5.5	132	88	2	1052	28	23	19	28	1.98
45554501--45555279	265	2.9	265	86	3	1086	27	23	19	28	1.98
45556420--45556465	22	2.1	22	88	8	67	15	15	0	69	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45560828--45560859	15	2.2	14	94	5	55	53	9	6	31	1.58
45565066--45565118	24	2.2	24	86	0	70	39	9	22	28	1.85
45567537--45567656	62	1.9	62	96	0	222	39	11	12	36	1.80
45570883--45571321	222	2.0	217	90	3	691	36	15	9	38	1.79
45580213--45580476	40	6.7	40	89	5	360	25	27	21	25	1.99
45591595--45591868	46	6.0	46	93	0	476	25	13	18	42	1.87
45591691--45592075	162	2.4	162	88	5	550	25	13	18	41	1.87
45591807--45592093	46	6.2	46	85	6	352	26	13	18	41	1.88
45591597--45592093	92	5.4	91	85	7	423	25	13	18	42	1.87
45591595--45591919	138	2.4	137	89	4	442	25	13	18	42	1.87
45593528--45593594	12	5.3	12	77	19	66	82	0	10	7	0.85
45593530--45593581	18	2.9	17	85	5	59	82	0	9	7	0.84
45593526--45593594	27	2.7	26	78	14	79	81	0	10	8	0.89
45593548--45593584	18	2.1	17	95	5	65	81	0	8	10	0.89
45597514--45597565	21	2.4	21	80	3	59	26	23	1	48	1.62
45597779--45598116	51	6.7	50	77	5	275	29	25	14	30	1.95
45597773--45598116	102	3.4	102	84	2	424	29	25	14	30	1.95
45604717--45604748	15	2.1	16	94	5	57	9	25	12	53	1.68
45607410--45607681	29	9.4	29	76	5	221	23	26	12	36	1.91
45614955--45615132	27	6.6	27	82	3	178	29	27	15	27	1.96
45618514--45619160	325	2.0	325	97	0	1231	28	23	19	29	1.98
45623345--45623522	27	6.6	27	81	3	169	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45626989--45627217	117	2.0	117	90	1	361	26	21	21	30	1.99
45632456--45632510	15	3.8	15	85	2	69	1	21	1	74	1.01
45634527--45634558	10	3.1	10	95	4	55	0	12	0	87	0.54
45645007--45645038	4	8.0	4	100	0	64	25	0	0	75	0.81
45647530--45647588	18	3.1	19	75	20	52	67	3	23	5	1.26
45647532--45647590	20	2.9	21	74	20	63	69	3	22	5	1.23
45653125--45653202	39	2.0	39	97	0	147	32	17	26	23	1.97
45656684--45656941	45	5.8	45	91	3	348	24	29	23	21	1.99
45660886--45660923	19	2.0	19	85	10	51	68	0	10	21	1.19
45671594--45671672	37	2.1	37	88	4	115	25	30	18	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153