genome.fa.s18.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  95  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29950950--29951075	20	6.6	20	70	18	65	33	4	0	61	1.23
29951017--29951072	28	2.0	29	82	10	71	33	1	1	62	1.16
29951034--29951146	7	16.6	7	66	27	50	35	3	0	60	1.20
29951299--29951371	22	3.4	21	82	14	78	36	2	0	60	1.11
29954534--29954659	46	2.7	46	95	0	216	22	21	26	30	1.99
29956180--29956258	37	2.1	37	88	4	115	25	30	18	25	1.98
29956377--29956598	47	4.6	47	89	2	309	27	30	9	32	1.88
29963244--29963330	27	3.1	27	63	18	70	28	8	25	37	1.84
29963236--29963347	56	2.0	56	100	0	224	26	7	26	39	1.82
29964411--29964494	25	3.4	25	75	6	80	23	26	17	32	1.97
29983001--29983042	18	2.4	18	92	4	68	40	11	19	28	1.87
29984121--29984195	26	2.9	26	76	9	82	18	20	20	41	1.91
29988652--29988677	13	2.0	13	100	0	52	46	7	15	30	1.74
29998330--29998396	33	2.0	33	94	0	116	44	11	8	34	1.73
29999007--29999091	43	2.0	43	97	0	161	38	8	31	21	1.83
29999298--29999379	30	2.7	30	79	9	87	40	0	1	58	1.06
30001543--30001813	46	5.9	46	89	2	375	41	13	23	21	1.88
30001542--30001801	93	2.8	92	89	2	380	42	13	23	20	1.88
30001543--30001813	139	2.0	137	88	1	398	41	13	23	21	1.88
30003086--30003168	22	3.6	23	75	14	82	18	24	18	39	1.92
30006920--30007147	47	4.9	47	87	1	316	42	14	22	20	1.88
30006921--30007147	93	2.4	93	91	0	364	42	14	22	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30026509--30026640	47	2.8	47	79	3	122	31	15	25	27	1.96
30034217--30034363	42	3.5	42	79	9	147	29	21	17	31	1.96
30040168--30040591	27	15.7	27	82	5	259	37	21	8	33	1.83
30040325--30040591	81	3.3	80	83	5	315	41	20	7	29	1.81
30040706--30040794	27	3.3	26	85	4	99	37	19	24	19	1.94
30041598--30041707	26	4.3	26	92	6	174	28	18	23	30	1.98
30041598--30041707	51	2.2	49	88	9	168	28	18	23	30	1.98
30041598--30041717	25	4.7	25	89	5	127	27	20	24	28	1.99
30041913--30041991	31	2.5	31	91	0	131	30	18	25	25	1.98
30049507--30049544	18	2.2	18	86	9	53	68	0	10	21	1.19
30053232--30053275	23	2.0	22	82	13	54	38	13	0	47	1.43
30056237--30056263	14	1.9	14	100	0	54	22	7	11	59	1.56
30066403--30066515	5	22.6	5	100	0	226	19	0	0	80	0.71
30069323--30069410	27	3.1	27	79	8	97	30	22	23	22	1.99
30069518--30069585	28	2.4	28	92	0	109	32	7	25	35	1.83
30077209--30077326	55	2.1	55	83	7	141	36	22	22	18	1.95
30077242--30077326	28	3.1	27	86	6	118	32	22	24	20	1.97
30077429--30077498	28	2.5	28	95	0	122	31	7	28	32	1.84
30084751--30084819	30	2.3	30	89	0	102	23	31	23	21	1.98
30106098--30106138	22	2.0	21	86	13	59	21	21	7	48	1.74
30107994--30108021	6	4.7	6	100	0	56	35	0	0	64	0.94
30110319--30110382	31	2.0	32	96	3	121	45	9	0	45	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30113273--30113334	28	2.2	28	85	0	79	48	6	16	29	1.70
30113301--30113676	126	3.0	125	92	2	601	37	16	17	28	1.91
30116663--30116783	54	2.2	55	84	7	149	47	4	1	46	1.34
30117203--30117245	18	2.4	18	88	0	59	44	9	27	18	1.80
30117307--30117390	30	2.8	30	77	0	87	14	10	38	36	1.81
30117894--30117919	7	3.7	7	100	0	52	57	15	0	26	1.38
30131582--30131613	16	2.0	16	100	0	64	50	12	12	25	1.75
30132383--30132427	23	2.0	23	100	0	90	17	6	40	35	1.76
30136064--30136088	6	4.2	6	100	0	50	52	16	0	32	1.44
30136699--30136732	14	2.4	14	90	0	50	14	2	17	64	1.40
30146317--30146353	16	2.3	17	90	9	60	48	0	13	37	1.43
30146811--30146864	28	1.9	28	84	0	72	46	3	12	37	1.60
30148230--30148263	5	6.8	5	87	12	52	82	2	0	14	0.79
30151425--30151482	29	2.0	29	93	0	98	51	3	25	18	1.62
30165086--30165136	26	2.0	26	100	0	102	39	15	3	41	1.66
30166204--30166356	42	3.6	42	79	5	157	32	26	16	24	1.96
30173897--30173933	19	2.1	19	90	10	60	37	10	10	40	1.75
30178599--30178646	24	2.0	24	95	0	87	8	6	31	54	1.55
30188324--30188493	85	2.0	85	98	0	331	54	9	9	26	1.63
30189328--30189373	21	2.2	21	92	0	74	15	36	19	28	1.92
30189338--30189384	21	2.2	21	88	0	67	12	36	23	27	1.91
30193498--30193715	105	2.1	105	97	1	413	37	12	6	43	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30198002--30198072	27	2.6	27	84	4	90	22	21	12	43	1.86
30198027--30198084	27	2.1	27	87	0	80	22	24	15	37	1.93
30198163--30198293	45	2.9	45	82	0	172	24	20	12	41	1.87
30211644--30211874	71	3.2	71	71	4	214	34	7	12	45	1.71
30223820--30223854	16	2.2	16	94	0	61	71	0	8	20	1.11
30223964--30224022	13	4.7	12	79	8	55	71	8	3	16	1.25
30223964--30224011	4	11.5	4	78	8	51	75	8	0	16	1.04
30223964--30224022	17	3.5	16	79	9	55	71	8	3	16	1.25
30224389--30224430	21	2.0	21	85	0	57	69	0	0	30	0.89
30231239--30231293	30	1.9	30	85	10	80	52	5	1	40	1.35
30234444--30234490	23	2.0	23	84	8	60	74	2	0	23	0.93
30236698--30236723	9	2.9	9	100	0	52	30	0	0	69	0.89
30237040--30237086	15	2.9	16	80	17	53	46	0	2	51	1.13
30237040--30237095	17	3.3	18	80	11	57	48	0	1	50	1.11
30271805--30271870	35	1.9	34	82	14	82	66	3	24	6	1.28
30272858--30273115	42	6.1	42	85	0	291	24	18	21	35	1.95
30274002--30274111	54	2.1	53	98	1	211	40	3	13	41	1.62
30278346--30278452	49	2.2	49	83	3	126	21	15	30	31	1.95
30280194--30280264	27	3.0	23	74	20	58	67	4	7	21	1.32
30283845--30284034	18	10.6	18	98	0	344	27	11	27	33	1.91
30292357--30292413	25	2.3	25	96	0	105	29	12	22	35	1.91
30302152--30302235	43	2.0	43	95	0	150	40	21	9	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30302381--30302492	23	4.8	22	77	11	107	37	20	21	20	1.94
30302381--30302492	24	4.7	23	77	15	104	37	20	21	20	1.94
30309977--30310016	21	2.0	20	85	5	53	10	37	27	25	1.88
30315357--30315410	27	2.0	27	100	0	108	14	25	3	55	1.56
30316228--30316402	48	3.6	48	76	1	172	28	21	28	21	1.99
30317925--30318086	54	3.0	54	98	0	306	24	22	12	40	1.89
30320154--30320193	13	3.1	13	92	0	71	40	25	7	27	1.82
30320741--30320888	40	3.7	40	80	3	145	25	22	26	26	2.00
30320741--30320888	80	1.9	80	85	2	208	25	22	26	26	2.00
30322239--30322416	27	6.6	27	85	3	214	30	28	14	26	1.95
30322260--30322415	82	1.9	81	89	3	242	30	28	14	26	1.95
30324527--30324568	22	1.9	22	85	9	59	33	9	14	42	1.78
30327156--30327325	43	4.0	43	72	8	132	34	25	13	26	1.93
30332863--30332895	7	4.7	7	100	0	66	27	0	15	57	1.38
30338250--30338325	22	3.3	22	67	22	66	32	13	28	25	1.93
30338225--30338418	47	4.1	47	89	0	280	31	10	28	28	1.91
30338247--30338474	94	2.4	91	81	11	255	33	10	27	28	1.90
30338623--30338767	37	3.9	37	94	0	245	22	19	33	24	1.97
30341894--30343221	338	3.9	338	99	0	2593	39	9	17	32	1.83
30350476--30350580	53	2.0	53	94	0	183	40	16	5	37	1.72
30352468--30352691	40	5.6	40	83	6	274	25	26	23	24	2.00
30352468--30352691	83	2.8	80	85	5	274	25	26	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30359797--30359889	23	3.8	23	78	13	73	24	21	19	34	1.96
30361371--30361490	59	2.0	59	82	3	143	47	5	16	30	1.70
30365680--30365718	14	2.8	14	92	0	60	41	7	17	33	1.79
30366163--30366216	15	3.3	15	74	18	54	44	0	1	53	1.11
30366249--30366284	16	2.2	17	90	9	58	36	0	2	61	1.11
30366244--30366290	13	3.3	14	80	14	51	46	0	2	51	1.13
30369238--30369462	40	5.6	40	80	4	265	24	27	23	24	2.00
30369641--30369807	46	3.6	46	76	7	160	31	17	27	23	1.97
30370123--30370247	38	3.3	38	94	3	216	30	24	16	28	1.96
30376736--30376996	40	6.6	40	80	5	271	24	27	23	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153