genome.fa.s18.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  29  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10160628--10160873	122	2.0	122	94	1	431	42	7	23	26	1.80
10171326--10171358	15	2.2	15	100	0	66	45	6	24	24	1.75
10172742--10172782	20	2.0	20	100	0	82	14	19	14	51	1.77
10179002--10179121	20	6.0	20	66	3	80	17	27	19	35	1.94
10178973--10179100	60	2.1	59	78	4	139	18	29	18	32	1.95
10179016--10179123	40	2.7	40	92	0	171	19	29	18	32	1.96
10182672--10182825	50	3.0	50	83	7	157	24	31	18	25	1.98
10186282--10186512	127	1.8	127	83	1	311	35	11	16	36	1.85
10188196--10188815	82	7.4	83	84	7	635	22	20	24	32	1.98
10188192--10188810	167	3.7	168	86	7	681	22	20	24	32	1.98
10188954--10189603	87	7.4	87	92	1	865	24	23	24	28	2.00
10188949--10189603	176	3.7	176	87	3	890	23	23	23	28	2.00
10189079--10189216	44	3.2	43	62	11	109	24	26	23	26	2.00
10189110--10189336	44	5.2	44	63	12	142	23	22	25	28	1.99
10189330--10189554	44	5.2	44	61	18	119	24	24	23	27	2.00
10189374--10189510	43	3.2	43	63	17	111	22	22	26	28	1.99
10190578--10190610	16	1.9	18	88	11	52	0	15	6	78	0.93
10192382--10192445	21	3.0	21	69	24	62	46	10	21	20	1.81
10192372--10192463	42	2.2	42	88	2	130	48	9	21	19	1.77
10193988--10194218	127	1.8	127	82	1	302	35	11	16	36	1.85
10215740--10215818	39	2.0	41	87	5	117	30	20	29	20	1.97
10215735--10215826	39	2.3	41	81	5	116	32	19	26	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10218559--10218672	39	2.9	40	81	3	133	32	31	16	19	1.94
10218694--10218888	39	5.1	39	82	6	236	32	32	18	15	1.93
10218694--10218888	78	2.5	78	87	3	270	32	32	18	15	1.93
10220096--10220363	104	2.6	105	93	1	450	29	30	20	18	1.97
10220698--10220755	30	1.9	30	82	0	71	29	24	8	37	1.85
10221571--10221684	39	2.9	38	90	5	174	32	32	18	16	1.93
10222018--10222051	18	1.9	18	94	5	61	47	14	0	38	1.45
10228655--10228912	66	3.9	66	99	0	507	26	37	17	18	1.93
10229046--10229181	57	2.3	60	86	10	190	22	25	22	30	1.99
10232151--10232370	39	5.6	39	83	4	273	34	30	18	16	1.93
10232151--10232370	117	1.9	117	87	3	327	34	30	18	16	1.93
10258014--10258106	35	2.7	35	84	3	107	24	18	17	39	1.91
10268391--10268429	21	1.9	21	89	5	62	28	2	2	66	1.18
10274538--10274621	27	3.1	27	91	1	134	41	17	19	21	1.90
10277528--10277569	20	2.1	20	100	0	84	28	16	21	33	1.95
10280380--10282230	615	3.0	615	99	0	3648	27	24	16	31	1.96
10287736--10287915	91	2.0	91	94	2	317	25	14	17	43	1.86
10292963--10292999	19	1.9	19	94	0	65	27	16	16	40	1.89
10295323--10295400	29	2.7	28	84	11	104	25	15	30	28	1.96
10314869--10314898	9	3.3	9	100	0	60	36	33	20	10	1.86
10316358--10316391	13	2.6	13	90	0	50	32	5	14	47	1.69
10322225--10322265	21	2.0	21	81	18	50	24	26	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10329336--10329376	2	20.5	2	100	0	82	0	48	0	51	1.00
10333643--10333673	3	10.3	3	100	0	62	0	32	0	67	0.91
10335794--10335836	19	2.3	19	95	0	77	41	6	11	39	1.68
10335805--10335859	19	3.1	18	80	17	53	36	3	14	45	1.63
10336387--10336464	19	3.6	19	71	25	57	21	2	3	71	1.14
10336367--10336466	46	2.2	46	96	1	184	23	2	4	71	1.14
10336367--10336459	25	3.8	25	73	12	95	21	2	4	72	1.13
10336398--10336473	20	3.2	25	63	25	65	28	1	3	65	1.18
10336527--10336580	21	2.8	20	78	10	67	29	1	3	64	1.21
10336520--10336572	27	2.0	27	82	14	65	32	1	3	62	1.24
10338293--10338341	17	2.9	17	76	11	55	16	24	26	32	1.96
10342263--10342338	23	3.3	23	80	12	93	32	23	18	25	1.97
10348595--10348649	23	2.4	24	81	9	69	7	20	30	41	1.79
10352453--10352483	12	2.6	12	94	0	53	22	41	29	6	1.78
10354121--10354237	23	5.1	23	85	2	155	24	21	23	30	1.99
10368704--10368743	21	1.9	21	85	10	55	45	2	0	52	1.14
10368772--10368933	55	3.1	51	76	12	134	33	4	4	57	1.40
10378162--10378249	42	2.2	40	76	15	90	22	29	22	25	1.99
10378236--10378316	29	2.8	29	88	0	117	19	33	30	16	1.94
10390971--10391375	106	3.8	105	85	9	539	31	14	13	40	1.85
10395277--10395303	12	2.2	12	100	0	54	18	14	66	0	1.25
10395271--10395341	30	2.4	29	86	9	90	16	16	57	8	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10398035--10398089	9	6.2	9	95	2	85	21	10	25	41	1.86
10398250--10398274	12	2.1	12	100	0	50	16	24	36	24	1.94
10400627--10400663	2	18.5	2	100	0	74	51	0	48	0	1.00
10407836--10407921	37	2.3	37	91	0	145	29	12	23	34	1.92
10407786--10407970	88	2.1	86	91	2	298	30	14	23	32	1.94
10407873--10408034	50	3.2	50	87	2	236	31	13	24	30	1.94
10409634--10409768	41	3.3	40	83	11	175	27	21	28	22	1.99
10409936--10410015	38	2.1	38	83	4	99	33	8	18	38	1.82
10412440--10412483	23	1.9	23	86	9	63	27	27	27	18	1.98
10434221--10434351	27	4.9	27	71	3	93	36	16	22	24	1.94
10434334--10434408	27	2.8	27	83	4	89	32	12	29	26	1.92
10434358--10434413	27	2.1	27	93	0	94	32	8	32	26	1.87
10443248--10443299	20	2.5	20	81	6	59	53	0	1	44	1.11
10443442--10443513	28	2.7	27	81	10	76	50	4	0	45	1.21
10444230--10444272	19	2.2	20	84	12	63	32	18	0	48	1.48
10444401--10444492	38	2.5	37	82	5	96	27	27	21	23	1.99
10444425--10444535	38	2.9	38	77	8	107	31	25	19	23	1.98
10444425--10444534	41	2.8	38	80	6	114	31	24	20	23	1.98
10447711--10447759	22	2.1	24	88	7	75	61	2	2	34	1.19
10448421--10448520	26	3.6	26	66	23	69	63	13	12	11	1.52
10448425--10448522	31	3.3	31	68	13	96	64	12	12	10	1.49
10449830--10449881	25	2.1	25	85	7	70	0	28	3	67	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10449831--10449916	10	8.3	10	70	7	55	2	20	4	72	1.14
10449870--10449900	15	2.0	16	93	6	55	6	12	9	70	1.31
10450382--10450406	9	2.8	9	100	0	50	68	8	0	24	1.16
10455108--10455165	23	2.3	26	82	8	77	22	24	20	32	1.98
10455731--10455780	24	2.1	24	80	0	64	50	6	8	36	1.57
10455851--10455882	16	1.9	17	93	6	57	75	3	18	3	1.08
10456831--10456885	22	2.5	22	91	5	85	10	25	18	45	1.82
10459049--10459094	24	1.9	24	83	16	60	32	0	17	50	1.47
10459253--10459393	40	3.6	40	74	6	135	26	18	24	30	1.98
10459580--10459623	11	3.7	12	85	8	54	50	0	20	29	1.49
10459602--10459640	12	3.2	13	85	10	55	48	0	20	30	1.50
10467699--10467728	8	3.8	8	100	0	60	13	13	13	60	1.60
10474385--10474429	22	2.0	23	86	4	65	35	2	6	55	1.38
10481258--10481301	14	3.0	15	81	15	56	65	0	20	13	1.26
10489429--10489472	10	4.2	10	88	8	61	75	2	2	20	1.03
10489451--10489568	20	6.2	18	71	20	64	60	5	1	33	1.29
10489436--10489513	20	3.9	19	72	16	59	65	2	0	32	1.06
10490001--10490052	9	5.9	9	78	13	54	30	3	0	65	1.10
10490000--10490052	17	3.0	17	78	10	61	30	5	0	64	1.17
10510508--10510546	17	2.3	18	86	8	55	64	0	0	35	0.94
10517171--10517195	4	6.2	4	100	0	50	72	0	0	28	0.86
10537026--10537054	12	2.3	13	94	5	51	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10543490--10543672	46	4.0	46	91	0	294	27	27	9	35	1.87
10544418--10544465	17	2.9	17	84	3	62	50	18	2	29	1.59
10547827--10547864	20	1.9	20	88	0	58	52	0	10	36	1.36
10548725--10548823	41	2.4	41	88	5	139	38	11	26	24	1.88
10557567--10557601	15	2.3	15	100	0	70	34	5	11	48	1.63
10581403--10581432	6	5.0	6	91	0	51	0	46	3	50	1.18
10585137--10585232	23	4.2	23	92	5	167	31	25	20	22	1.98
10585458--10585496	18	2.2	17	86	13	53	46	20	0	33	1.51
10593168--10593199	16	2.0	16	93	0	55	65	0	21	12	1.25
10608899--10608978	39	2.1	39	95	0	142	43	15	7	33	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153