genome.fa.s18.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  151  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47383657--47383854	51	3.9	51	82	7	260	29	27	17	25	1.98
47383762--47383844	26	3.3	26	61	19	66	31	27	15	25	1.96
47383660--47383882	101	2.2	102	84	7	285	29	27	16	26	1.97
47387520--47388114	297	2.0	297	100	0	1190	36	14	12	37	1.83
47393732--47393792	23	2.7	23	84	0	68	40	16	18	24	1.90
47393725--47393792	23	3.0	23	78	4	66	41	16	16	26	1.88
47393802--47394020	47	4.7	47	92	0	348	41	13	18	26	1.88
47393826--47393996	24	7.2	24	73	6	143	40	12	19	27	1.88
47393802--47394020	23	9.3	24	72	6	153	41	13	18	26	1.88
47394863--47394984	43	2.9	42	77	14	124	29	28	19	22	1.98
47401769--47401827	23	2.6	23	83	0	64	42	15	13	28	1.85
47401850--47402039	23	8.1	23	72	3	155	40	13	18	26	1.88
47401869--47402039	47	3.6	47	95	1	299	40	12	19	27	1.88
47401892--47402015	24	5.2	24	73	3	117	39	13	20	26	1.90
47402881--47403004	43	2.9	42	81	10	128	30	27	19	22	1.98
47403114--47403195	43	1.9	43	90	5	130	32	28	19	19	1.96
47402885--47403266	191	2.0	191	100	0	764	29	25	18	26	1.98
47411033--47411079	23	2.0	23	95	0	85	23	10	17	48	1.77
47412450--47412502	15	3.3	15	70	14	52	37	3	7	50	1.49
47412446--47412520	33	2.3	33	100	0	150	41	2	9	46	1.50
47412465--47412521	18	3.3	18	71	14	66	45	1	8	43	1.45
47417070--47417361	50	5.8	50	89	1	433	21	30	22	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47417070--47417361	149	1.9	151	88	2	437	21	30	22	25	1.99
47417070--47417361	99	2.9	100	90	1	424	21	30	22	25	1.99
47417456--47417485	13	2.3	13	94	0	51	50	13	3	33	1.58
47424697--47424880	50	3.7	50	85	2	235	20	29	22	27	1.98
47424697--47424880	100	1.8	101	85	1	262	20	29	22	27	1.98
47426998--47427035	20	2.0	20	94	5	69	23	28	15	31	1.96
47438961--47439016	25	2.2	25	81	12	71	25	23	19	32	1.98
47451637--47451740	52	2.0	52	100	0	208	40	3	9	46	1.55
47451700--47451754	16	3.4	16	71	14	58	41	3	3	50	1.37
47451697--47451762	33	2.0	33	100	0	132	39	3	6	51	1.42
47457519--47457614	44	2.2	42	82	12	106	31	26	16	26	1.97
47459528--47460030	27	18.6	27	81	2	431	41	20	15	22	1.89
47467941--47467992	21	2.5	22	75	9	54	48	3	28	19	1.66
47468374--47468410	17	2.2	17	90	0	56	24	18	8	48	1.75
47469186--47469251	33	2.0	33	82	5	80	27	16	24	31	1.96
47469221--47469331	28	4.0	28	85	0	150	29	18	24	27	1.98
47469476--47469725	27	9.3	29	79	14	250	19	17	18	44	1.87
47469475--47469725	81	3.1	79	84	6	317	19	17	18	44	1.87
47474175--47474216	22	2.1	19	86	13	57	45	2	0	52	1.13
47480049--47480098	24	2.1	24	85	7	66	50	16	16	18	1.79
47481454--47481522	27	2.6	27	67	17	70	31	11	21	34	1.89
47485756--47485919	59	2.8	60	80	8	185	37	20	13	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47485744--47485935	29	6.6	30	81	5	191	36	22	15	26	1.93
47485742--47485910	88	1.9	87	84	8	227	36	21	14	27	1.92
47485745--47485932	88	2.1	88	82	6	222	37	22	14	25	1.93
47487418--47487684	32	8.4	32	76	3	193	37	20	20	21	1.95
47487418--47487654	96	2.5	95	79	3	233	37	20	19	21	1.94
47487856--47487928	24	3.1	23	72	5	65	52	23	4	20	1.64
47487984--47488274	27	10.8	27	79	3	171	21	19	19	39	1.92
47488108--47488272	27	6.1	27	83	6	192	20	20	18	40	1.92
47491851--47491898	24	2.0	24	100	0	96	37	8	12	41	1.73
47495501--47495539	19	2.1	18	95	4	69	33	2	0	64	1.08
47495663--47495705	22	2.0	22	86	9	61	55	0	2	41	1.12
47495661--47495708	11	4.3	12	75	15	50	54	0	2	43	1.12
47499699--47499723	13	1.9	13	100	0	50	32	16	20	32	1.94
47500391--47500611	85	2.6	85	99	0	433	26	26	9	37	1.86
47505885--47505919	17	2.1	17	94	0	61	51	5	14	28	1.65
47510983--47511026	21	2.1	21	91	0	70	13	20	27	38	1.90
47511086--47511461	43	8.7	43	73	9	133	26	28	21	23	1.99
47511237--47511333	43	2.3	43	85	0	140	23	29	19	26	1.98
47511286--47511461	87	2.0	86	83	5	221	28	31	16	23	1.96
47511275--47511461	43	4.3	43	77	8	155	28	31	16	23	1.96
47511460--47511556	21	4.6	21	76	0	68	5	40	18	36	1.73
47511532--47511672	66	2.1	66	83	5	169	14	26	17	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47511548--47511696	66	2.3	66	81	6	160	16	24	17	41	1.89
47523568--47523613	22	2.1	22	91	0	74	43	0	8	47	1.34
47523527--47523643	56	2.1	56	96	0	216	42	0	8	48	1.33
47526376--47526412	10	3.7	10	92	0	65	43	13	0	43	1.44
47528131--47528198	15	4.9	14	71	16	52	41	36	0	22	1.54
47528134--47528171	15	2.5	15	86	0	58	36	44	0	18	1.50
47528688--47529006	41	7.8	41	75	8	226	37	23	23	15	1.93
47528688--47529006	82	3.9	80	79	8	308	37	23	23	15	1.93
47529276--47529360	40	2.1	40	100	0	170	35	2	22	40	1.67
47535181--47535249	20	3.5	19	76	4	66	14	27	17	40	1.88
47535254--47535303	20	2.5	20	83	6	57	8	34	20	38	1.82
47537792--47537852	22	2.8	22	84	0	77	42	9	9	37	1.71
47539585--47539623	20	1.9	21	84	5	53	41	12	0	46	1.42
47553512--47553545	9	3.7	9	96	4	59	73	8	0	17	1.08
47553511--47553560	11	4.9	10	83	13	66	70	6	2	22	1.20
47553508--47553568	11	5.8	11	82	5	65	67	4	4	22	1.30
47553508--47553569	10	6.0	10	81	7	52	66	4	4	24	1.31
47553600--47553645	23	1.9	24	86	8	67	52	2	17	28	1.56
47554625--47554679	6	9.7	6	80	7	62	67	1	18	12	1.32
47559721--47559774	25	2.2	25	82	0	63	33	20	18	27	1.96
47561624--47561765	29	4.9	29	71	8	128	37	11	25	25	1.90
47561602--47561765	86	1.9	87	91	1	267	37	12	25	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47561620--47561780	57	2.8	58	70	9	141	38	11	24	25	1.89
47575802--47575843	7	6.0	7	100	0	84	28	28	28	14	1.95
47582304--47582346	23	1.9	22	90	4	68	53	0	0	46	1.00
47588905--47588986	32	2.6	32	94	0	146	32	6	6	54	1.49
47597058--47597104	23	2.1	23	84	7	62	51	12	4	31	1.59
47602560--47602606	23	2.1	23	84	7	62	51	12	4	31	1.59
47610118--47610155	20	1.9	20	84	10	51	50	5	7	36	1.54
47615040--47615088	19	2.4	21	86	6	66	18	4	8	69	1.30
47615452--47615503	25	2.1	25	100	0	104	38	3	17	40	1.68
47615955--47615992	20	1.9	20	88	0	58	52	5	5	36	1.47
47619217--47619327	58	1.9	58	100	0	222	44	20	16	18	1.87
47620165--47620267	52	2.0	50	85	7	136	45	11	13	29	1.79
47623479--47623520	13	3.3	12	87	12	50	33	0	0	66	0.92
47631366--47631390	11	2.3	11	100	0	50	28	8	24	40	1.83
47642978--47643070	19	5.1	19	70	12	77	31	10	11	46	1.75
47642959--47643080	54	2.3	54	95	0	217	32	10	14	41	1.81
47643157--47643305	74	2.0	75	88	1	219	26	5	20	47	1.71
47645192--47645272	36	2.2	36	80	8	94	72	1	18	7	1.14
47645226--47645278	18	2.9	18	91	0	79	67	1	22	7	1.25
47645210--47645272	6	10.2	6	72	6	54	74	1	17	6	1.10
47647047--47647083	19	1.9	19	94	0	65	29	8	13	48	1.71
47651324--47651512	40	4.8	40	84	1	209	13	26	19	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47651339--47651487	79	1.9	81	90	2	239	14	28	18	38	1.90
47651421--47651504	20	4.2	20	70	1	62	11	32	17	38	1.87
47651324--47651512	79	2.4	80	81	0	227	13	26	19	40	1.89
47654360--47654411	25	2.2	24	89	6	79	26	25	21	26	1.99
47667608--47667972	27	13.5	27	81	5	323	42	18	18	20	1.89
47668132--47668187	26	2.1	27	86	3	78	16	25	25	33	1.95
47668145--47668217	26	2.8	26	89	0	101	15	24	23	36	1.93
47668347--47668408	28	2.2	28	85	0	79	25	22	27	24	2.00
47669500--47669588	25	3.8	25	71	21	77	44	25	16	12	1.83
47669536--47669620	20	4.0	20	71	14	71	42	25	20	11	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153