genome.fa.s18.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  119  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37250023--37250067	13	3.1	16	76	23	55	57	0	0	42	0.98
37250086--37250122	15	2.6	15	83	8	51	48	0	0	51	1.00
37258811--37258935	62	2.0	63	83	6	157	30	16	9	44	1.79
37261865--37261893	14	2.1	14	100	0	58	37	20	13	27	1.91
37266739--37266813	32	2.3	32	84	8	91	41	26	14	17	1.88
37279522--37279582	22	2.8	21	87	2	77	39	3	1	55	1.26
37287500--37287541	16	2.8	16	78	10	52	80	0	2	16	0.81
37288477--37288892	44	9.6	43	73	8	225	26	23	21	29	1.99
37288465--37288891	87	4.9	87	71	13	306	25	23	21	29	1.99
37290131--37290183	7	7.9	7	79	8	56	16	15	0	67	1.23
37290125--37290182	20	2.9	20	84	5	82	17	17	0	65	1.27
37291117--37291145	6	4.8	6	100	0	58	17	0	13	68	1.20
37296398--37296439	16	2.8	16	78	10	52	80	0	2	16	0.81
37297117--37297178	10	6.0	10	72	12	54	61	6	0	32	1.21
37297123--37297185	21	3.1	20	86	13	85	60	4	0	34	1.18
37297123--37297185	20	3.1	21	86	11	87	60	4	0	34	1.18
37297140--37297233	48	2.0	48	81	8	111	55	4	0	40	1.19
37298778--37298803	4	6.5	4	100	0	52	23	0	0	76	0.78
37307389--37307426	16	2.4	16	86	0	58	57	0	2	39	1.12
37308431--37308500	29	2.3	30	79	11	72	55	7	8	28	1.56
37315308--37315689	192	2.0	192	96	0	701	23	24	15	36	1.94
37315725--37315779	18	3.1	18	91	0	92	34	12	20	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37321366--37321392	2	13.5	2	100	0	54	48	0	0	51	1.00
37321957--37321991	17	1.9	19	88	11	56	51	5	5	37	1.50
37322050--37322214	54	3.1	54	100	0	330	38	12	9	40	1.75
37323400--37323428	15	1.9	15	100	0	58	48	17	13	20	1.81
37326784--37326824	21	2.0	21	90	0	64	19	29	21	29	1.98
37339076--37339109	17	2.1	17	88	5	52	23	0	5	70	1.09
37346116--37346145	16	1.9	16	93	6	53	20	0	13	66	1.24
37348606--37348663	3	19.0	3	82	3	53	34	1	5	58	1.30
37348741--37348785	21	2.3	19	88	7	63	33	2	4	60	1.29
37348965--37349012	11	4.7	11	76	23	52	35	0	6	58	1.23
37348973--37349009	18	2.1	18	94	0	65	35	0	5	59	1.20
37348965--37349036	30	2.5	30	84	8	87	34	2	5	56	1.37
37349171--37349230	24	2.4	25	75	5	59	33	3	13	50	1.58
37351258--37351292	18	1.9	18	100	0	70	51	28	14	5	1.65
37351981--37352028	20	2.5	20	83	10	55	68	0	6	25	1.12
37351974--37352037	21	3.2	20	72	10	58	68	0	7	23	1.15
37352287--37352330	22	2.0	22	87	12	65	25	9	0	65	1.21
37352326--37352423	9	10.6	9	74	21	62	29	2	2	66	1.14
37352364--37352419	20	2.8	20	83	2	69	32	1	1	64	1.14
37352298--37352423	30	4.4	30	75	16	90	29	3	1	65	1.20
37352308--37352423	57	2.1	57	82	9	141	29	3	1	65	1.19
37354254--37354345	11	8.4	11	72	3	51	16	10	7	65	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37358730--37358774	22	2.0	22	95	0	81	17	0	17	64	1.29
37362718--37362813	51	1.9	50	97	2	183	30	4	13	52	1.59
37363626--37363690	30	2.2	30	83	10	80	60	3	3	33	1.28
37367498--37367566	30	2.3	31	79	2	77	53	15	13	17	1.73
37368178--37368290	43	2.6	43	98	0	217	29	21	31	17	1.96
37378358--37378705	44	7.9	44	79	3	371	31	25	15	28	1.96
37378358--37378705	132	2.6	132	96	0	633	31	25	15	28	1.96
37395146--37395180	17	2.1	18	89	10	56	77	0	11	11	1.00
37405932--37406097	53	3.1	53	87	6	203	27	15	27	30	1.96
37407471--37407513	6	7.0	6	81	5	50	76	0	20	2	0.89
37407461--37407513	19	2.8	19	85	2	63	73	0	22	3	0.99
37407460--37407518	12	5.1	12	77	6	59	72	0	22	5	1.03
37407568--37407595	4	7.0	4	100	0	56	50	25	0	25	1.50
37410474--37410539	20	3.3	20	93	2	116	46	15	10	27	1.78
37418879--37419280	201	2.0	201	98	0	768	30	15	15	38	1.88
37421619--37421651	15	2.2	15	94	0	57	39	18	9	33	1.82
37423106--37423200	49	1.9	49	91	0	154	23	37	17	21	1.94
37432421--37432447	13	2.1	13	100	0	54	25	7	7	59	1.51
37438813--37438905	18	5.2	18	92	0	150	33	16	22	27	1.95
37440105--37440908	156	5.1	155	82	5	883	29	22	12	34	1.92
37440766--37441020	133	1.9	132	84	7	336	33	23	12	30	1.92
37442824--37442860	6	5.8	6	93	6	56	21	0	0	78	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37446112--37446243	39	3.4	39	82	4	167	18	12	22	46	1.81
37448683--37448722	20	2.0	21	85	14	57	17	2	5	75	1.10
37449011--37449049	18	2.1	19	85	4	53	17	2	7	71	1.21
37451072--37451112	21	1.9	22	90	5	66	36	2	19	41	1.65
37453198--37454124	29	32.0	29	98	0	1764	34	13	27	24	1.93
37454127--37454258	33	4.0	33	86	1	176	36	8	20	34	1.83
37457833--37457959	62	2.0	62	100	0	254	49	3	4	42	1.39
37472551--37472605	20	2.8	20	88	0	83	29	16	29	25	1.97
37475127--37475160	14	2.4	14	90	9	52	14	2	5	76	1.09
37475124--37475148	13	1.9	13	100	0	50	24	0	4	72	1.02
37475671--37475717	20	2.3	20	85	0	67	21	12	36	29	1.91
37475904--37476021	55	2.1	55	84	6	159	25	22	13	38	1.90
37476653--37476699	20	2.3	20	92	0	76	31	17	29	21	1.96
37490461--37490517	19	2.9	19	80	12	62	43	24	1	29	1.64
37490614--37490700	27	3.2	27	81	0	111	44	17	16	21	1.86
37506028--37506078	25	2.0	25	84	0	66	60	1	7	29	1.36
37506110--37506155	24	2.0	23	86	4	65	28	4	6	60	1.40
37507362--37507417	16	3.3	17	82	5	69	35	1	0	62	1.06
37507367--37507415	25	1.9	26	88	12	75	38	2	0	59	1.09
37513986--37514065	32	2.5	32	95	2	144	41	28	2	27	1.69
37516780--37516809	15	2.0	15	93	0	51	13	36	0	50	1.42
37520513--37520598	27	3.2	27	85	3	111	22	18	18	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37520840--37520927	44	2.0	44	93	0	149	34	39	6	19	1.78
37523558--37523698	56	2.7	53	90	6	207	21	29	21	26	1.99
37527048--37527074	8	3.4	8	100	0	54	59	0	11	29	1.32
37529548--37529597	3	16.7	3	87	0	73	32	34	0	34	1.58
37530800--37530842	14	3.0	14	93	3	68	65	25	2	6	1.30
37531890--37531955	30	2.2	30	83	2	89	50	1	1	46	1.20
37532188--37532251	32	2.0	32	87	0	92	12	9	9	68	1.39
37532195--37532262	32	2.1	32	83	0	82	17	7	5	69	1.33
37532195--37532271	11	7.2	11	76	4	50	16	6	7	68	1.35
37532213--37532271	21	2.8	21	73	2	55	18	8	6	66	1.41
37532415--37532453	14	2.9	14	82	17	55	71	0	0	28	0.86
37534779--37534941	84	1.9	84	83	9	208	41	13	25	19	1.88
37540970--37541007	19	2.0	19	89	0	58	50	7	2	39	1.46
37550596--37550646	6	8.3	6	75	12	50	78	0	5	15	0.93
37551745--37551796	25	2.1	25	89	7	79	5	3	42	48	1.45
37551850--37551892	21	2.0	21	86	4	59	16	2	9	72	1.21
37552204--37552578	44	7.8	44	70	16	246	28	21	21	28	1.99
37552126--37552651	98	5.4	98	95	0	890	28	21	21	28	1.98
37552248--37552606	54	7.2	54	69	17	310	28	21	20	28	1.98
37552505--37552876	143	2.6	143	92	0	609	26	22	22	28	1.99
37561552--37562181	322	2.0	322	90	1	1014	37	17	18	26	1.93
37567583--37567626	21	2.1	21	100	0	88	40	18	9	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37571163--37571187	9	2.8	9	100	0	50	0	8	44	48	1.32
37572866--37572961	47	2.0	47	97	0	183	46	6	5	41	1.51
37574612--37574698	39	2.2	39	81	6	95	19	25	26	28	1.99
37575374--37575419	24	2.0	24	86	4	67	26	19	10	43	1.84
37576578--37576857	146	2.0	135	86	7	371	17	22	2	57	1.52
37579938--37580027	45	2.0	45	97	0	171	41	14	11	33	1.81
37583254--37583294	17	2.3	18	87	4	57	31	2	19	46	1.63
37589190--37589381	51	3.8	52	78	8	189	32	26	16	24	1.96
37589181--37589381	102	2.0	102	86	3	280	32	25	16	24	1.96
37593560--37593686	50	2.6	49	83	5	141	28	25	17	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153