genome.fa.s18.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  25  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8798549--8798691	75	1.9	75	79	2	162	23	25	18	32	1.97
8811876--8811962	21	4.1	21	76	7	95	36	21	21	19	1.95
8811876--8811962	44	2.0	41	82	6	102	36	21	21	19	1.95
8812951--8812998	24	2.1	23	84	7	62	56	2	0	41	1.11
8813124--8813188	30	2.3	27	86	7	85	41	0	0	58	0.98
8813136--8813188	27	2.1	26	86	10	74	43	0	0	56	0.99
8813129--8813180	16	3.4	16	75	25	58	40	0	0	59	0.97
8821882--8821908	13	2.1	13	100	0	54	22	22	22	33	1.97
8822872--8822957	31	2.8	31	87	0	109	30	15	4	50	1.64
8828774--8828832	7	9.0	7	79	20	58	23	3	0	72	0.99
8828791--8828833	12	3.5	12	81	6	59	23	4	0	72	1.04
8828777--8828836	25	2.4	26	94	5	106	21	3	0	75	0.95
8829982--8830186	111	1.8	113	86	2	297	31	11	23	33	1.91
8831736--8831766	16	1.9	16	100	0	62	19	19	0	61	1.35
8832275--8832306	3	10.7	3	93	0	55	0	28	0	71	0.86
8847971--8848011	19	2.2	19	100	0	82	21	4	19	53	1.63
8853204--8853231	4	7.0	4	100	0	56	25	50	0	25	1.50
8859000--8859039	21	1.9	21	84	0	53	5	5	45	45	1.47
8862317--8862361	19	2.4	18	85	7	63	44	0	2	53	1.13
8863987--8864046	30	2.1	27	84	9	75	53	6	1	38	1.37
8863994--8864044	26	2.0	25	88	3	75	54	7	1	35	1.40
8865758--8865840	26	3.3	26	65	19	66	39	2	13	44	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8876299--8876363	32	2.1	32	94	2	114	29	9	12	49	1.71
8877334--8877377	23	1.9	22	82	17	54	38	25	0	36	1.56
8877476--8877550	23	3.3	23	94	0	123	34	28	18	18	1.95
8881476--8881522	19	2.5	20	86	6	62	42	10	21	25	1.85
8883619--8883750	50	2.6	51	77	9	130	55	2	8	34	1.42
8883737--8883813	2	40.0	2	70	12	54	48	1	6	44	1.37
8883730--8883813	22	3.8	22	73	14	64	48	1	7	42	1.38
8883972--8884004	15	2.1	16	94	5	59	63	0	0	36	0.95
8884673--8884708	11	3.5	11	92	7	58	80	5	5	8	1.01
8889076--8889133	22	2.7	21	86	7	80	31	1	0	67	1.01
8889160--8889197	12	3.2	12	92	7	60	36	0	0	63	0.95
8889373--8889465	44	2.1	44	87	4	132	35	5	23	35	1.78
8889613--8889645	17	1.9	17	93	0	57	66	0	0	33	0.92
8889786--8890107	152	2.1	153	97	0	610	46	6	10	36	1.64
8891097--8891135	20	2.0	20	94	0	69	25	15	23	35	1.94
8891248--8891300	23	2.3	24	75	15	58	64	0	0	35	0.94
8891241--8891318	17	4.3	17	70	20	59	60	0	1	38	1.05
8895185--8895250	29	2.3	29	83	0	87	31	7	15	45	1.74
8898072--8898132	9	6.8	9	92	0	95	24	9	27	37	1.87
8913321--8913353	16	2.0	17	88	5	50	51	0	0	48	1.00
8918278--8918309	16	2.1	16	94	5	57	62	0	0	37	0.95
8929894--8929933	21	2.0	21	90	5	64	22	0	22	55	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8930313--8930362	21	2.4	22	77	19	61	38	6	14	42	1.70
8935160--8935209	24	2.0	26	84	11	68	54	10	10	26	1.65
8935228--8935268	16	2.5	16	88	11	57	70	2	9	17	1.25
8949633--8949673	13	3.2	13	92	0	73	24	9	29	36	1.87
8951052--8951096	22	2.1	22	84	12	58	57	0	2	40	1.11
8954417--8954460	21	2.1	21	86	0	61	56	9	11	22	1.62
8965856--8965905	17	2.7	20	78	18	70	10	0	44	46	1.37
8985976--8986000	13	1.9	13	100	0	50	24	8	28	40	1.83
8987760--8987896	72	1.9	72	93	0	238	55	15	6	22	1.63
8989911--8990030	62	1.9	62	89	3	188	60	15	7	16	1.56
8995002--8995167	22	7.5	22	99	0	323	27	31	0	40	1.57
8995224--8995281	29	2.0	29	87	9	84	37	1	1	58	1.18
8995379--8995412	15	2.3	15	90	5	52	26	0	5	67	1.13
8996146--8996184	20	2.0	20	90	10	62	35	2	5	56	1.35
8996355--8996386	7	4.6	7	100	0	64	28	0	12	59	1.34
8997246--8997292	24	2.0	24	86	0	67	23	25	23	27	2.00
8997544--8997730	29	6.5	29	89	0	286	45	19	1	33	1.58
8999217--8999571	29	12.3	29	87	1	471	43	25	0	30	1.60
9012958--9012996	20	1.9	20	84	5	51	43	7	2	46	1.46
9014668--9014697	13	2.3	13	100	0	60	0	36	6	56	1.26
9014975--9015045	27	2.8	24	74	12	70	12	40	19	26	1.88
9026856--9027258	206	2.0	205	94	0	716	30	25	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9037222--9037283	31	2.0	31	82	14	76	46	1	0	51	1.10
9037417--9037487	15	4.4	15	75	18	63	50	0	1	47	1.09
9037417--9037487	34	2.2	31	85	7	97	50	0	1	47	1.09
9037977--9038034	26	2.2	26	85	11	75	31	5	5	58	1.42
9044160--9044198	17	2.3	17	90	0	60	46	2	2	48	1.29
9044236--9044302	17	3.8	17	80	5	80	55	1	4	38	1.29
9044236--9044303	18	3.8	18	80	3	84	55	1	4	38	1.29
9044195--9044528	178	1.9	181	84	4	462	50	2	6	40	1.43
9044435--9044464	10	3.1	10	95	4	53	73	6	0	20	1.05
9044503--9044547	18	2.5	19	82	10	60	48	2	0	48	1.13
9046363--9046403	20	2.0	20	100	0	82	29	24	34	12	1.91
9046419--9046539	59	2.0	60	96	1	226	28	20	14	36	1.92
9048187--9049180	494	2.0	494	99	0	1954	31	16	11	40	1.84
9051732--9051792	32	1.9	32	83	12	81	44	4	1	49	1.33
9052141--9052190	13	3.8	13	78	0	64	32	6	26	36	1.81
9054736--9054804	22	3.1	22	81	8	86	42	15	23	18	1.89
9062967--9063002	2	18.0	2	100	0	72	0	50	0	50	1.00
9071931--9071963	16	2.1	16	88	5	50	63	0	3	33	1.10
9081303--9081359	28	2.0	29	89	3	89	29	0	0	70	0.88
9081308--9081366	28	2.1	28	87	0	82	28	1	0	69	0.98
9081336--9081385	26	1.9	26	87	0	73	34	2	2	62	1.18
9084369--9084413	9	5.0	9	88	0	72	42	22	11	24	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9084523--9084566	18	2.4	18	88	0	61	13	2	43	40	1.57
9086137--9086198	23	2.6	24	76	5	72	32	22	27	17	1.97
9086185--9086253	26	2.7	26	82	6	79	39	24	18	17	1.92
9086210--9086260	26	2.0	26	84	7	68	37	23	21	17	1.94
9089927--9089953	2	13.5	2	100	0	54	51	48	0	0	1.00
9089970--9090140	77	2.2	77	83	5	213	47	21	10	21	1.80
9092000--9092045	23	2.0	24	82	4	58	32	26	0	41	1.56
9092190--9092228	3	13.3	3	86	5	53	66	0	2	30	1.05
9093205--9093261	28	2.2	25	81	9	60	26	14	15	43	1.85
9093500--9093775	126	2.2	126	86	5	373	30	15	21	32	1.94
9095799--9096012	108	2.0	108	98	0	410	24	22	27	25	2.00
9096826--9097124	29	10.3	29	87	8	405	31	0	24	43	1.59
9096946--9096985	20	2.0	20	100	0	80	30	0	30	40	1.57
9099237--9099278	22	1.9	22	85	0	57	64	7	0	28	1.20
9099263--9099296	15	2.3	15	90	5	52	67	5	0	26	1.13
9099253--9099296	14	3.1	15	80	9	56	63	6	0	29	1.20
9099387--9099439	17	3.0	17	71	10	52	60	0	0	39	0.97
9099394--9099449	28	2.0	28	89	6	87	60	1	0	37	1.07
9099540--9099586	22	2.1	22	92	0	76	42	0	27	29	1.56
9099488--9099586	52	1.9	52	82	0	126	36	0	30	33	1.58
9100081--9100123	21	2.0	21	81	0	50	58	6	0	34	1.25
9100211--9100271	24	2.5	23	80	15	61	49	4	0	45	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9100219--9100298	35	2.3	35	83	8	94	50	3	0	46	1.19
9102073--9102117	23	2.0	23	90	0	72	57	17	2	22	1.50
9102575--9102614	21	1.9	21	94	0	71	30	27	17	25	1.97
9102658--9102718	30	2.0	30	81	9	70	22	9	18	49	1.77
9103418--9103525	15	7.2	15	64	12	60	44	7	22	25	1.79
9103414--9103525	30	3.7	30	93	0	188	45	7	22	25	1.77
9108111--9108218	15	7.2	15	69	12	87	43	7	23	25	1.79
9108104--9108218	30	3.8	30	97	0	203	44	6	23	25	1.78
9118023--9118059	3	12.3	3	100	0	74	32	0	0	67	0.91
9127535--9127577	13	3.3	13	84	9	52	34	4	27	32	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153