genome.fa.s18.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  113  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35504641--35504671	3	10.3	3	92	0	53	64	0	3	32	1.09
35504640--35504669	15	2.0	15	100	0	60	60	0	6	33	1.23
35504749--35507097	88	26.8	88	85	2	2889	28	24	19	28	1.99
35504749--35507097	703	3.4	703	88	2	3221	28	24	19	28	1.99
35506948--35507097	79	1.9	79	88	2	230	32	26	16	26	1.96
35508251--35508313	20	3.0	21	90	4	92	14	12	0	73	1.11
35508251--35508313	7	9.0	7	89	5	92	14	12	0	73	1.11
35509267--35509309	17	2.6	17	85	7	54	18	0	6	74	1.04
35510817--35510850	9	3.8	9	92	0	50	8	47	0	44	1.34
35513353--35513401	3	16.3	3	86	0	71	63	4	2	30	1.24
35513391--35513441	16	3.2	16	75	5	50	68	5	1	23	1.22
35514478--35514532	25	2.2	26	78	9	62	61	7	9	21	1.50
35514963--35514997	8	4.5	8	85	7	54	11	0	48	40	1.39
35514963--35515011	23	2.2	22	89	10	73	14	0	46	38	1.44
35514963--35515011	15	3.3	15	80	11	55	14	0	46	38	1.44
35514989--35515022	14	2.4	14	90	0	50	26	0	41	32	1.56
35515159--35515677	146	3.5	146	98	0	984	46	13	15	25	1.81
35515583--35515879	109	2.8	103	88	5	409	51	11	12	25	1.72
35516696--35516756	30	2.0	30	93	0	104	26	21	39	13	1.90
35517471--35517530	31	1.9	31	96	0	111	28	15	23	33	1.94
35519227--35519273	21	2.2	21	84	0	58	40	12	0	46	1.42
35519982--35520065	8	10.5	8	71	16	59	47	15	1	35	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35519982--35520065	17	4.7	17	70	21	64	47	15	1	35	1.53
35519886--35520057	46	3.6	46	72	14	125	46	16	1	35	1.57
35520009--35520065	17	3.4	17	78	9	71	47	15	1	35	1.56
35520713--35520981	43	6.3	43	83	1	324	26	18	29	25	1.98
35523360--35523393	17	2.0	17	88	11	52	44	0	11	44	1.40
35526207--35526270	32	2.0	32	100	0	128	31	28	9	31	1.88
35531328--35531516	98	1.9	98	87	0	279	26	12	22	38	1.90
35542385--35542435	19	2.7	19	80	17	61	33	1	0	64	1.05
35545885--35545945	21	2.9	21	87	0	86	18	21	18	42	1.89
35548214--35548262	8	5.9	9	75	15	52	77	4	0	18	0.92
35548214--35548263	16	3.1	16	80	8	66	78	4	0	18	0.91
35554073--35554127	9	6.2	9	74	19	53	63	0	3	32	1.12
35554073--35554121	26	2.0	24	88	8	71	61	0	4	34	1.15
35554260--35554309	7	7.0	7	76	19	50	66	2	6	26	1.26
35554268--35554309	19	2.1	19	86	8	57	66	0	7	26	1.17
35555773--35555821	24	2.0	24	100	0	98	38	12	24	24	1.90
35558771--35558915	65	2.2	65	87	2	211	44	28	9	17	1.81
35562422--35562505	35	2.4	36	80	7	102	26	25	27	21	1.99
35562465--35562568	35	3.0	35	75	0	109	24	18	26	30	1.98
35563919--35563972	27	2.0	27	92	0	90	42	12	24	20	1.87
35565015--35565111	27	3.6	27	88	0	140	34	12	21	31	1.91
35565035--35565120	27	3.2	25	80	9	91	32	12	20	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35576686--35576725	19	2.1	19	90	4	62	20	5	2	72	1.15
35590230--35590254	13	1.9	13	100	0	50	40	16	0	44	1.47
35594300--35594415	50	2.3	50	90	0	178	22	25	23	28	1.99
35601398--35601450	23	2.4	22	76	20	56	9	16	1	71	1.21
35606280--35606602	41	7.9	41	86	4	447	30	28	22	18	1.97
35606651--35606773	40	3.1	38	81	4	129	23	21	19	34	1.96
35608324--35608379	20	2.8	21	78	13	64	39	14	25	21	1.91
35615279--35615431	40	3.9	40	81	13	183	26	18	26	28	1.98
35622965--35623105	40	3.5	40	85	5	196	24	24	26	23	2.00
35625101--35625196	18	5.5	17	77	8	88	7	17	2	72	1.17
35625117--35625163	24	2.0	24	95	0	85	8	12	4	74	1.19
35625101--35625196	6	16.5	6	69	6	72	7	17	2	72	1.17
35630598--35630649	20	2.5	20	84	9	61	75	1	19	3	1.06
35632322--35632393	33	2.1	34	89	2	110	38	8	12	40	1.73
35635020--35635055	18	2.1	17	89	5	54	5	11	5	77	1.10
35636061--35636093	12	3.0	11	87	12	50	24	0	9	66	1.20
35636061--35636093	11	2.9	12	91	8	52	24	0	9	66	1.20
35637503--35637896	197	2.0	197	98	0	761	45	14	7	32	1.73
35639837--35639914	39	2.0	39	97	0	147	52	7	7	32	1.58
35640067--35640142	40	1.9	40	97	0	143	21	22	23	32	1.98
35644841--35644881	12	3.4	12	86	6	57	7	43	21	26	1.79
35649343--35649373	16	1.9	16	93	0	53	32	16	6	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35656425--35656474	18	2.5	20	87	9	68	74	2	20	4	1.08
35658211--35658351	44	3.2	44	64	7	122	32	15	16	35	1.90
35658174--35658368	90	2.2	90	100	0	390	36	14	14	34	1.87
35664019--35664052	16	2.1	17	88	5	52	35	20	5	38	1.77
35671045--35671082	19	2.0	19	85	10	51	63	2	21	13	1.42
35672390--35672441	14	3.9	13	76	20	54	50	15	7	26	1.71
35673069--35673140	27	2.7	27	84	0	99	38	29	18	13	1.89
35673205--35673248	13	3.4	12	79	14	52	22	11	15	50	1.76
35686078--35686302	60	3.8	60	86	1	301	27	26	11	34	1.91
35686102--35686211	31	3.6	31	65	9	82	27	28	10	33	1.90
35694873--35694921	25	2.1	23	85	11	64	22	14	26	36	1.92
35694917--35694964	25	1.9	25	86	0	69	31	16	20	31	1.95
35701183--35701288	40	2.7	40	96	0	203	38	19	24	16	1.92
35715021--35715051	16	2.0	15	93	6	53	51	0	19	29	1.47
35716005--35716053	25	2.0	25	95	0	89	30	22	20	26	1.98
35719172--35719196	6	4.2	6	100	0	50	0	32	0	68	0.90
35719252--35719280	13	2.1	14	93	6	51	41	24	13	20	1.89
35734392--35734435	22	1.9	22	86	9	61	38	15	2	43	1.60
35745181--35745303	62	2.0	62	98	0	237	43	21	17	17	1.88
35750587--35750627	18	2.3	19	80	16	52	36	0	14	48	1.44
35767815--35767866	27	1.9	27	84	0	68	28	30	19	21	1.97
35780199--35780263	34	1.9	34	93	0	112	24	0	30	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35784937--35785245	170	1.8	170	85	2	431	28	17	26	27	1.97
35790195--35790464	33	8.2	32	75	15	214	44	19	6	29	1.75
35790253--35790361	14	6.8	17	66	20	74	43	21	8	27	1.81
35790185--35790460	35	8.4	34	71	16	152	44	18	6	29	1.75
35790214--35790506	64	4.5	66	85	5	368	45	18	7	29	1.77
35790249--35790491	31	7.6	29	72	18	107	44	18	8	27	1.78
35790850--35791259	78	5.3	78	94	0	689	40	17	3	38	1.68
35795418--35795588	94	1.8	94	84	0	234	33	21	17	27	1.96
35805969--35806333	179	2.0	179	95	0	658	33	15	20	30	1.94
35809851--35809884	16	2.2	15	89	5	50	44	0	0	55	0.99
35810169--35810268	49	2.0	49	98	0	191	25	36	18	21	1.95
35810548--35810607	25	2.4	25	83	10	70	38	3	0	58	1.15
35810548--35810607	8	7.2	8	76	14	50	38	3	0	58	1.15
35816432--35816465	16	2.1	16	88	5	50	8	0	14	76	1.01
35816996--35817075	41	2.0	41	92	0	133	22	25	20	32	1.98
35824687--35824737	21	2.4	22	87	6	70	7	21	0	70	1.12
35824687--35824743	21	2.7	20	82	15	62	7	22	0	70	1.11
35834326--35834593	40	6.7	40	93	0	455	31	19	26	22	1.98
35841808--35841977	40	4.3	39	86	6	200	25	21	27	25	1.99
35841835--35842012	79	2.2	80	79	5	184	25	21	28	25	1.99
35845590--35845628	19	2.0	19	85	5	51	48	5	2	43	1.38
35846336--35846379	3	14.7	3	100	0	88	0	31	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35859085--35859190	48	2.2	49	86	1	142	38	5	3	51	1.43
35868659--35868857	38	5.3	38	74	2	150	19	21	25	34	1.96
35868700--35868859	76	2.1	75	84	1	203	19	21	26	32	1.97
35868700--35868929	75	3.0	75	82	4	228	17	21	26	33	1.96
35868862--35868980	41	2.9	41	78	0	121	19	19	24	36	1.94
35877673--35877699	14	1.9	14	100	0	54	22	7	7	62	1.46
35883833--35883876	22	2.0	21	83	12	54	40	0	0	59	0.98
35885364--35885413	18	2.7	18	93	3	82	66	0	0	34	0.92
35901730--35901764	17	2.0	18	88	5	54	25	0	2	71	1.00
35907810--35907890	26	3.2	26	66	16	78	53	6	12	28	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153