genome.fa.s18.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  52  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17222229--17222289	14	4.6	13	75	15	54	39	1	13	45	1.53
17222667--17222709	21	2.0	22	86	4	61	58	11	2	27	1.46
17224793--17224832	14	2.7	15	84	7	55	65	2	10	22	1.35
17226282--17226325	12	3.6	12	82	14	54	13	0	6	79	0.92
17226282--17226319	19	2.0	20	89	5	60	13	0	7	78	0.94
17227950--17227989	21	2.0	20	85	14	55	0	57	0	42	0.98
17228447--17228489	19	2.3	19	100	0	86	34	0	4	60	1.17
17228867--17228931	20	3.2	20	76	12	53	33	4	3	58	1.34
17229549--17229604	21	2.6	22	81	13	71	28	8	0	62	1.25
17229560--17229600	22	1.9	21	90	5	64	26	12	0	60	1.31
17229519--17229614	37	2.5	37	79	12	97	31	7	1	60	1.31
17242097--17242509	87	4.7	87	84	7	530	26	16	18	38	1.91
17242259--17242293	14	2.5	14	95	0	61	25	8	0	65	1.21
17242539--17242588	25	2.0	25	100	0	100	44	16	8	32	1.76
17244345--17244387	19	2.3	19	100	0	86	34	0	4	60	1.17
17245450--17245505	21	2.6	22	81	13	71	28	8	0	62	1.25
17245461--17245501	22	1.9	21	90	5	64	26	12	0	60	1.31
17245420--17245515	37	2.5	37	79	12	97	31	7	1	60	1.31
17258311--17258366	24	2.4	24	82	5	62	25	0	21	53	1.46
17258455--17258488	16	2.1	17	88	5	52	17	0	38	44	1.49
17258310--17259252	157	6.0	156	87	4	1233	33	2	19	44	1.63
17258358--17259260	312	2.9	310	87	5	1284	34	2	19	43	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17259076--17259135	24	2.5	25	79	15	74	21	0	28	50	1.49
17259092--17259141	24	2.1	24	82	10	59	16	0	30	54	1.42
17259281--17259715	126	3.5	126	91	0	674	37	14	19	28	1.92
17262354--17262385	9	3.6	9	100	0	64	62	0	0	37	0.95
17263584--17263616	7	4.7	7	92	0	57	60	12	0	27	1.32
17264759--17264805	22	2.2	21	85	14	62	46	8	17	27	1.76
17270331--17270640	128	2.4	127	83	2	379	36	17	17	29	1.92
17271706--17271765	28	2.2	28	87	3	86	58	3	1	36	1.25
17272440--17272475	19	1.9	19	88	5	56	47	0	2	50	1.15
17273959--17274021	28	2.2	29	88	8	103	34	11	12	41	1.79
17275829--17275991	52	3.2	50	80	11	140	31	25	15	26	1.96
17275847--17275991	53	2.8	52	86	1	173	31	26	15	26	1.95
17275859--17275991	52	2.5	53	86	1	169	30	26	15	27	1.96
17279059--17279108	11	4.5	11	85	5	73	36	0	2	62	1.07
17279062--17279111	23	2.3	21	89	6	73	36	0	2	62	1.07
17280442--17280499	22	2.6	22	86	0	71	32	24	25	17	1.96
17280587--17280669	27	3.1	26	87	5	112	37	21	21	19	1.94
17280869--17281063	27	7.2	27	85	0	237	26	20	18	35	1.95
17280869--17281063	54	3.6	54	87	0	264	26	20	18	35	1.95
17281068--17281771	27	26.2	27	82	7	808	39	10	22	27	1.86
17285474--17285516	16	2.5	17	80	20	54	39	0	6	53	1.28
17289725--17289768	18	2.4	18	80	0	52	63	4	9	22	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17292793--17292822	15	2.0	15	93	0	51	40	10	26	23	1.86
17293300--17294480	590	2.0	590	96	0	2177	37	18	14	28	1.91
17298075--17298145	32	2.2	32	92	0	115	39	8	23	28	1.84
17298075--17298145	16	4.4	16	77	10	74	39	8	23	28	1.84
17299913--17299965	26	2.0	27	85	7	74	24	15	22	37	1.92
17314932--17314978	25	2.0	25	87	8	71	25	4	6	63	1.36
17315838--17315883	20	2.2	20	85	14	58	26	8	8	56	1.58
17316041--17316078	19	2.1	18	85	14	51	21	7	0	71	1.11
17316313--17316379	6	11.2	6	79	6	55	31	4	5	58	1.42
17316316--17316350	12	2.9	12	91	0	61	34	0	8	57	1.29
17320665--17320701	15	2.4	16	90	4	58	72	2	0	24	0.97
17320697--17320812	30	3.9	30	82	3	137	30	24	3	42	1.71
17320697--17320813	60	2.0	59	86	5	164	29	23	3	42	1.71
17320694--17320826	30	4.5	29	74	16	94	33	21	3	42	1.68
17320988--17321020	14	2.3	15	89	5	50	57	30	3	9	1.45
17321323--17321392	11	6.0	11	77	12	61	70	8	21	0	1.14
17321339--17321393	24	2.3	24	93	0	101	65	9	25	0	1.22
17321979--17322026	17	2.8	17	76	23	55	31	16	10	41	1.82
17322090--17322154	17	3.8	18	74	8	55	36	13	12	36	1.83
17322079--17322170	38	2.6	36	84	10	109	39	13	10	36	1.79
17322115--17322170	18	3.0	18	71	19	60	35	12	10	41	1.78
17322142--17322225	28	3.0	29	94	3	145	30	8	14	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17322195--17322457	17	14.1	18	73	14	126	32	11	10	46	1.74
17322378--17322455	19	4.1	20	79	12	92	37	12	8	41	1.75
17322335--17322470	37	3.7	38	74	13	110	31	12	11	44	1.77
17322587--17323166	295	2.0	295	99	0	1142	29	20	15	34	1.93
17335031--17335234	53	3.5	53	68	19	156	26	14	21	37	1.92
17334955--17335305	122	2.9	122	93	1	560	28	13	21	36	1.92
17335059--17335497	193	2.3	192	91	3	693	27	13	22	37	1.91
17335181--17335374	71	2.7	69	83	5	210	28	12	21	37	1.90
17335346--17335551	54	3.5	54	67	17	160	27	13	21	36	1.91
17335253--17335587	123	2.7	123	92	1	548	26	13	21	38	1.90
17335571--17335604	16	2.1	17	88	5	52	17	11	5	64	1.45
17335510--17335920	191	2.2	182	82	11	491	27	17	18	37	1.92
17335510--17335768	91	2.9	88	82	10	318	26	17	18	37	1.93
17335870--17336030	54	2.9	54	89	3	243	29	14	18	37	1.91
17336304--17336405	30	3.4	30	84	2	134	29	22	3	44	1.71
17336304--17336420	60	2.0	59	84	5	155	29	22	3	44	1.69
17343004--17343137	12	11.2	12	100	0	268	0	0	49	50	1.00
17343125--17343197	23	3.2	22	80	5	83	17	2	39	39	1.64
17343141--17343202	23	2.7	23	89	0	88	19	4	40	35	1.73
17343746--17344278	88	6.0	88	90	3	721	37	18	17	27	1.93
17344172--17344206	14	2.5	14	90	0	52	51	5	25	17	1.67
17344186--17344345	73	2.2	72	87	3	230	31	21	18	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17355877--17355916	9	4.4	9	81	12	55	72	0	2	25	0.97
17356063--17356129	25	2.7	25	81	6	75	52	5	8	32	1.57
17356061--17356147	25	3.5	25	75	10	72	51	5	8	34	1.55
17356166--17356199	3	11.3	3	87	0	50	61	0	2	35	1.11
17363531--17363665	52	2.8	46	81	12	171	37	14	22	25	1.93
17363562--17363669	52	2.1	52	96	0	198	37	12	21	28	1.90
17368206--17368689	241	2.0	242	98	0	934	41	11	11	34	1.78
17373139--17373164	6	4.3	6	100	0	52	53	15	15	15	1.73
17377245--17377322	37	2.1	36	90	6	122	48	3	3	43	1.39
17377354--17377427	25	3.0	25	80	3	80	66	2	29	1	1.14
17385485--17386175	59	11.7	59	100	0	1382	34	28	13	23	1.93
17397068--17397418	132	2.7	132	77	4	334	28	20	18	32	1.96
17405133--17405278	49	3.0	49	90	1	229	32	29	13	23	1.93
17406531--17406676	37	4.0	37	93	1	242	24	21	16	36	1.94
17406640--17406908	46	5.6	46	84	10	340	28	22	14	34	1.93
17406683--17406902	52	4.3	52	85	8	299	27	22	14	35	1.93
17406640--17406908	98	2.7	98	93	0	457	28	22	14	34	1.93
17410031--17410077	18	2.6	18	86	6	60	42	27	12	17	1.85
17413172--17413201	3	10.0	3	92	0	51	0	30	0	70	0.88
17414540--17414612	6	11.6	7	94	5	74	83	0	1	15	0.71
17414549--17414612	6	10.7	6	100	0	128	84	0	0	15	0.63
17423231--17423280	25	2.0	25	92	7	84	20	28	16	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17425942--17425988	10	4.6	10	82	12	51	59	6	0	34	1.23
17435595--17435637	18	2.4	18	92	0	68	41	9	27	20	1.83
17437685--17437743	30	2.0	30	89	0	91	30	20	27	22	1.98
17437857--17437939	26	3.2	26	79	3	96	39	15	21	22	1.91
17437872--17437953	26	3.2	26	77	6	87	40	19	20	19	1.92
17438148--17438262	27	4.3	27	79	12	128	24	17	16	41	1.89
17438148--17438262	54	2.1	54	85	6	153	24	17	16	41	1.89
17440754--17440841	30	2.9	30	80	6	99	27	20	28	23	1.99
17440926--17441003	26	3.0	26	75	0	84	38	21	24	15	1.92
17441194--17441254	27	2.3	27	80	5	70	21	19	19	39	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153