genome.fa.s18.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  32  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11205317--11205382	16	3.9	16	78	13	53	48	10	13	27	1.75
11205484--11205761	17	15.4	17	74	9	144	45	10	12	32	1.75
11205521--11205588	23	3.0	22	91	4	100	41	7	7	44	1.60
11205504--11205588	23	4.0	21	83	15	97	43	8	7	41	1.62
11205706--11205761	18	3.1	19	76	7	62	41	14	10	33	1.80
11205756--11205806	18	2.9	17	77	8	57	47	7	9	35	1.66
11206300--11206371	10	8.0	9	79	13	69	0	19	0	80	0.71
11206302--11206373	18	4.1	18	78	10	94	0	16	0	83	0.65
11206314--11206373	16	3.6	16	80	10	75	0	15	0	85	0.61
11206640--11206692	13	4.0	13	83	9	54	0	22	0	77	0.77
11206657--11206715	3	18.0	3	86	13	73	0	33	0	66	0.92
11206647--11206715	10	7.3	10	82	11	74	0	30	0	69	0.89
11206657--11206712	13	4.5	13	80	17	64	0	33	0	66	0.92
11207068--11207184	30	3.9	30	80	3	130	43	4	22	29	1.72
11207070--11207184	60	1.9	59	84	5	151	43	4	21	30	1.72
11207467--11207676	50	4.0	50	86	8	267	36	17	16	29	1.92
11207467--11207676	54	3.9	54	87	7	295	36	17	16	29	1.92
11207467--11207676	104	2.0	105	89	3	325	36	17	16	29	1.92
11207761--11207793	13	2.4	14	95	5	59	69	9	9	12	1.36
11207754--11207801	14	3.5	14	85	5	62	62	8	10	18	1.52
11207666--11207855	106	1.8	105	87	3	283	39	17	16	25	1.91
11207878--11208679	72	11.1	72	95	1	1351	33	18	16	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11207878--11208679	217	3.7	216	93	2	1351	33	18	16	31	1.93
11208891--11209122	122	1.9	126	83	6	312	33	23	14	28	1.94
11209064--11209194	70	1.9	70	90	0	208	28	21	14	35	1.93
11223872--11223939	24	2.8	24	79	0	73	51	2	29	16	1.59
11238446--11238478	3	11.0	3	100	0	66	0	33	0	66	0.92
11253074--11253118	22	2.1	21	88	12	65	53	4	15	26	1.61
11253210--11253239	7	4.3	7	100	0	60	26	13	46	13	1.80
11257819--11257859	20	2.0	21	85	4	57	48	19	2	29	1.61
11261779--11261839	29	2.1	29	85	11	81	47	4	0	47	1.23
11262732--11262785	25	2.2	25	83	6	65	40	0	3	55	1.17
11265600--11265653	21	2.6	21	87	0	72	27	7	33	31	1.84
11266509--11266563	28	2.0	28	89	7	85	58	0	0	41	0.98
11266522--11266621	19	5.2	18	70	16	67	61	2	2	35	1.19
11266522--11266641	30	4.1	28	76	9	71	60	2	3	33	1.26
11266575--11266632	30	1.9	30	89	0	89	60	3	1	34	1.24
11266507--11266621	38	2.9	38	74	13	117	59	1	1	37	1.18
11266800--11266870	19	3.6	19	73	17	56	28	7	2	61	1.36
11266799--11266891	38	2.4	38	79	13	91	27	6	2	63	1.30
11267389--11267437	18	2.7	18	84	6	55	34	12	16	36	1.86
11270815--11270908	44	2.1	44	100	0	188	37	13	6	42	1.70
11270833--11270903	22	3.2	22	63	21	58	42	12	7	38	1.70
11270887--11270930	22	2.0	22	91	4	72	40	13	4	40	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11271518--11271542	13	1.9	13	100	0	50	40	20	8	32	1.81
11277334--11277373	14	2.7	15	88	11	64	62	0	0	37	0.95
11277348--11277403	21	2.7	22	78	8	55	58	1	1	37	1.19
11278085--11278124	20	2.1	18	86	9	53	35	2	2	60	1.24
11279653--11279681	15	2.0	15	93	6	51	68	6	0	24	1.13
11286791--11286932	73	2.0	72	90	4	223	35	16	19	28	1.94
11287304--11287356	26	2.0	26	85	0	70	50	3	5	39	1.44
11287350--11287475	52	2.6	50	77	15	124	50	1	8	38	1.43
11287443--11287493	25	2.0	25	81	7	59	64	1	3	29	1.22
11287629--11287655	3	9.0	3	100	0	54	66	0	0	33	0.92
11289030--11289136	44	2.4	44	77	9	110	25	27	14	32	1.95
11289489--11290069	45	13.0	45	72	8	418	23	21	23	30	1.99
11289486--11290067	89	6.5	88	82	3	503	23	21	24	30	1.99
11289489--11290067	134	4.3	134	76	6	501	23	21	23	30	1.99
11292334--11292566	41	5.7	41	90	0	358	28	21	27	22	1.99
11293602--11293681	40	2.0	40	97	0	151	20	21	22	36	1.95
11294488--11294544	6	9.3	6	81	11	71	0	19	1	78	0.83
11294488--11294541	11	5.0	11	80	13	67	0	18	1	79	0.82
11294489--11294544	29	2.0	29	86	10	82	0	17	1	80	0.80
11298940--11298992	19	2.6	20	77	19	56	56	1	7	33	1.38
11298995--11299062	33	2.1	31	83	5	82	48	2	8	39	1.49
11299208--11299242	15	2.3	15	95	0	61	68	5	2	22	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11315322--11315893	237	2.5	233	88	3	834	38	8	7	44	1.64
11317473--11317530	30	1.9	31	92	3	100	68	12	10	8	1.38
11318282--11318329	18	2.6	18	81	12	53	37	0	25	37	1.56
11319577--11319639	31	2.0	31	96	0	117	22	7	31	38	1.83
11321407--11321432	11	2.4	11	100	0	52	26	0	0	73	0.84
11321668--11321750	12	6.5	12	66	17	51	43	2	0	54	1.13
11327876--11327925	10	5.2	10	80	7	59	70	0	30	0	0.88
11327879--11327921	19	2.3	19	88	11	63	69	0	30	0	0.88
11327991--11328025	3	11.3	3	93	6	61	68	0	31	0	0.90
11328208--11328256	21	2.4	21	86	3	64	69	18	12	0	1.19
11328348--11328444	15	6.5	15	81	5	108	80	0	19	0	0.71
11328346--11328440	8	12.0	8	76	10	97	80	0	20	0	0.72
11328346--11328444	23	4.4	23	75	13	100	79	0	20	0	0.73
11328765--11328803	21	1.9	21	84	5	53	53	10	2	33	1.48
11328989--11329031	22	2.0	22	86	8	63	53	16	4	25	1.62
11328645--11329068	219	1.9	220	80	9	492	38	13	11	36	1.81
11329027--11329188	17	9.4	17	78	8	157	30	11	10	47	1.74
11329023--11329188	35	4.8	33	77	13	147	29	12	10	48	1.73
11329150--11329227	36	2.1	37	81	11	88	39	6	12	41	1.69
11330979--11331068	45	2.0	45	91	0	144	24	16	24	34	1.95
11331113--11331156	23	1.9	22	82	17	54	38	0	25	36	1.56
11333228--11333277	23	2.2	24	78	10	59	58	8	2	32	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11335145--11335213	23	3.0	23	86	0	102	14	23	24	37	1.92
11335145--11335236	46	2.0	46	82	4	114	15	25	22	36	1.93
11340193--11340263	37	1.9	37	94	2	126	23	30	9	35	1.88
11359104--11359275	10	17.7	10	66	22	75	36	3	2	58	1.28
11359944--11359970	13	2.1	13	100	0	54	51	14	0	33	1.43
11361292--11361350	21	3.0	21	78	11	54	55	3	0	40	1.16
11368964--11368988	11	2.3	11	100	0	50	28	24	0	48	1.52
11373565--11373602	4	9.5	4	83	11	51	23	2	0	73	0.95
11377384--11377441	30	1.9	30	89	0	89	41	3	24	31	1.71
11377653--11377684	13	2.5	13	94	0	55	31	0	12	56	1.37
11377779--11378020	50	4.7	50	86	4	297	26	24	29	19	1.99
11377779--11378028	100	2.4	103	88	6	364	26	24	29	20	1.99
11384978--11385035	30	1.9	30	89	0	89	41	3	24	31	1.71
11385247--11385278	13	2.5	13	94	0	55	31	0	12	56	1.37
11385373--11385614	50	4.7	50	86	4	297	26	24	29	19	1.99
11385373--11385622	100	2.4	103	88	6	364	26	24	29	20	1.99
11390288--11390317	12	2.5	12	94	0	51	53	0	10	36	1.35
11391427--11391466	18	2.2	18	86	8	55	20	0	12	67	1.22
11391468--11391501	12	2.8	12	90	0	50	67	0	2	29	1.05
11393245--11393269	2	12.5	2	100	0	50	48	0	0	52	1.00
11393439--11393484	23	2.1	23	84	15	62	43	4	8	43	1.55
11394115--11394159	20	2.2	20	84	7	56	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11394128--11394167	20	2.1	19	90	4	62	37	0	0	62	0.95
11394806--11394901	31	3.1	31	95	3	174	45	13	9	31	1.75
11396100--11396986	443	2.0	443	84	2	1163	35	16	13	33	1.88
11400488--11400735	31	8.0	31	97	1	471	42	15	9	31	1.80
11406598--11406998	201	2.0	201	98	0	766	33	27	8	29	1.87
11411572--11411602	11	2.8	11	95	0	53	0	35	0	64	0.94
11411586--11411630	22	2.1	21	84	12	56	2	28	0	68	1.01
11412311--11412357	17	2.8	17	93	3	78	27	0	19	53	1.45
11413586--11413768	46	4.0	46	95	0	312	36	8	26	28	1.86
11424153--11424194	18	2.3	19	80	8	52	26	2	2	69	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153