genome.fa.s18.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  91  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28738978--28739054	33	2.3	32	80	6	91	33	16	22	27	1.95
28738873--28739066	105	1.8	105	85	2	273	32	16	23	26	1.96
28740240--28740272	17	2.0	17	88	5	50	69	12	6	12	1.35
28744035--28744063	14	2.1	14	100	0	58	44	13	20	20	1.85
28745928--28745987	24	2.6	23	75	15	68	50	1	0	48	1.11
28751236--28751275	13	3.0	14	78	14	57	42	5	20	32	1.73
28753430--28753484	28	2.0	28	82	7	67	61	1	0	36	1.06
28754579--28754643	32	2.1	30	88	5	94	26	3	13	56	1.52
28755231--28755344	34	3.5	32	79	11	108	50	14	0	34	1.50
28755376--28755446	21	3.4	21	72	0	70	46	26	0	26	1.53
28755367--28755465	42	2.3	43	81	10	121	47	29	1	22	1.58
28755432--28755476	16	2.8	16	90	6	65	53	35	0	11	1.37
28764136--28764185	17	3.1	16	80	11	50	74	10	0	16	1.08
28764414--28764474	30	2.0	30	90	0	95	24	26	31	18	1.97
28764772--28764801	13	2.3	13	94	0	51	16	26	30	26	1.97
28767278--28767308	6	5.0	6	96	4	53	80	0	0	19	0.71
28767250--28767306	25	2.3	26	75	9	64	73	1	3	21	1.07
28768976--28769012	18	2.0	19	89	5	58	45	8	18	27	1.77
28771309--28771353	22	2.0	22	100	0	90	35	4	13	46	1.63
28788193--28788239	20	2.4	20	89	3	69	57	6	10	25	1.56
28794160--28794198	21	1.9	21	89	5	62	30	17	20	30	1.96
28794611--28794659	24	2.0	24	100	0	98	20	4	12	63	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28805140--28805234	49	1.9	49	97	0	181	57	7	29	5	1.48
28808878--28808947	20	3.3	19	75	22	68	4	18	1	75	1.04
28809002--28809058	8	7.2	8	72	23	50	47	1	0	50	1.11
28809637--28809687	21	2.4	21	93	0	84	15	27	33	23	1.95
28813484--28813525	21	2.0	21	100	0	84	42	33	0	23	1.55
28814591--28814616	13	2.0	13	100	0	52	53	0	0	46	1.00
28819201--28819245	16	2.9	16	87	9	58	48	0	8	42	1.34
28819114--28819383	132	2.1	131	97	0	513	40	4	14	40	1.66
28826690--28826728	18	2.1	19	90	4	62	30	20	10	38	1.86
28827412--28827438	13	2.1	13	100	0	54	14	7	11	66	1.43
28828768--28828828	31	2.0	31	86	0	86	49	4	9	36	1.58
28834013--28834246	123	1.9	123	84	3	319	22	26	14	35	1.94
28834013--28834246	41	5.7	41	88	0	288	22	26	14	35	1.94
28843161--28843223	30	2.1	30	96	0	117	57	15	3	23	1.53
28844951--28845314	104	3.6	104	88	6	537	18	20	31	30	1.96
28844974--28845277	98	3.1	97	87	8	450	19	19	30	30	1.96
28847058--28847571	31	16.8	31	71	9	277	42	15	7	34	1.74
28847058--28847564	92	5.5	92	92	0	800	42	15	6	34	1.74
28849574--28849736	73	2.2	73	80	5	177	35	19	23	20	1.96
28849624--28849752	25	5.2	25	70	10	95	34	20	24	21	1.97
28853050--28853095	18	2.6	18	89	0	65	65	0	0	34	0.93
28853052--28853100	18	2.8	17	81	6	62	65	0	2	32	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28853300--28853436	9	14.0	9	68	15	76	59	0	4	35	1.23
28853334--28853383	22	2.3	22	86	3	66	52	2	2	44	1.24
28853374--28853439	19	3.5	19	78	12	73	63	0	3	33	1.10
28853375--28853436	28	2.2	28	86	10	92	64	0	3	32	1.09
28853619--28853712	49	2.0	47	83	8	118	22	6	4	67	1.32
28854408--28854462	26	2.1	26	96	0	101	29	0	16	54	1.42
28854636--28854662	2	13.5	2	100	0	54	48	0	0	51	1.00
28854936--28855121	43	4.3	43	79	1	122	30	31	18	20	1.96
28854914--28855121	86	2.4	85	79	3	200	27	30	18	23	1.97
28854978--28855146	86	2.0	86	81	0	203	27	28	18	25	1.98
28854896--28855140	129	1.9	129	79	3	278	27	30	20	22	1.98
28857626--28857679	23	2.5	22	82	8	58	44	0	7	48	1.31
28857628--28857694	20	3.2	21	73	14	50	47	0	7	44	1.31
28857701--28857744	21	2.2	20	88	12	63	13	6	0	79	0.92
28858419--28858668	89	2.8	88	94	2	437	45	25	1	27	1.63
28858589--28858735	66	2.3	66	86	4	201	45	21	0	31	1.57
28859236--28859472	41	5.8	41	88	3	336	33	24	21	20	1.97
28859915--28859945	14	2.1	15	94	5	55	41	0	3	54	1.16
28860437--28860503	27	2.5	27	95	2	118	44	0	11	43	1.41
28865549--28866380	416	2.0	416	100	0	1664	43	20	14	20	1.87
28866966--28867015	26	1.9	26	95	0	91	32	18	8	42	1.79
28866982--28867212	115	2.0	115	99	0	453	38	10	14	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28869200--28869267	9	7.3	9	70	18	50	63	2	1	32	1.18
28869202--28869249	10	5.0	10	80	14	57	68	2	0	29	1.01
28869202--28869249	19	2.5	19	83	12	71	68	2	0	29	1.01
28869202--28869267	18	3.5	19	80	12	73	63	3	1	31	1.19
28876057--28876082	11	2.4	11	100	0	52	26	0	0	73	0.84
28876041--28876111	29	2.4	30	82	13	85	30	1	0	67	0.99
28876135--28876213	41	1.9	41	92	0	131	22	22	13	40	1.90
28878213--28878292	29	2.8	29	80	3	99	33	16	6	43	1.73
28887157--28887181	13	1.9	13	100	0	50	48	0	8	44	1.32
28888237--28888301	19	3.4	19	68	19	53	35	3	10	50	1.53
28891333--28891439	25	4.4	23	81	9	85	38	22	22	16	1.93
28891351--28891439	25	3.6	25	89	0	133	39	22	20	17	1.92
28892402--28892444	5	8.8	5	94	5	79	58	0	0	41	0.98
28899009--28899039	6	5.2	6	100	0	62	0	0	16	83	0.64
28899658--28899689	15	2.1	15	94	0	55	50	0	0	50	1.00
28899688--28899866	60	3.1	54	65	22	137	48	7	1	43	1.41
28899647--28900086	120	3.7	120	97	0	810	48	5	1	43	1.37
28899908--28899942	18	2.0	17	88	5	52	54	0	0	45	0.99
28900028--28900062	18	2.0	17	88	5	52	54	0	0	45	0.99
28905611--28905705	48	2.0	48	91	0	154	25	11	18	44	1.84
28905747--28905787	21	2.0	21	95	0	73	31	7	0	60	1.24
28909778--28909821	21	2.2	21	84	8	56	63	4	22	9	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28909778--28909832	21	2.5	22	78	21	53	67	3	21	7	1.31
28912203--28912259	18	3.1	19	80	10	64	57	3	0	38	1.16
28917918--28917969	24	2.2	24	92	0	86	36	1	9	51	1.46
28917935--28917981	24	2.0	24	83	8	60	36	8	6	48	1.59
28923231--28923339	42	2.6	43	91	2	177	10	20	17	52	1.73
28929390--28929470	42	2.0	41	97	0	144	24	35	11	27	1.89
28930037--28930232	96	2.0	96	91	0	311	26	9	24	39	1.85
28932486--28932543	23	2.5	24	75	13	59	48	0	3	48	1.18
28937977--28938005	14	2.0	15	93	6	51	27	3	6	62	1.37
28938196--28938240	23	2.0	23	81	0	54	42	0	2	55	1.12
28945086--28945467	133	2.8	137	88	4	594	55	14	2	28	1.50
28945489--28945745	114	2.2	114	82	3	293	59	17	2	19	1.49
28945761--28945826	34	1.9	35	87	9	100	56	7	0	36	1.28
28956819--28956843	13	1.9	13	100	0	50	20	0	24	56	1.43
28958558--28958611	23	2.3	23	96	0	99	22	51	3	22	1.63
28980127--28980170	23	1.9	23	95	0	79	13	27	25	34	1.93
28985401--28985456	28	2.0	28	89	3	85	50	7	10	32	1.64
28985983--28986041	23	2.4	25	83	5	77	64	15	6	13	1.48
28989999--28990245	50	4.8	50	81	6	212	28	21	26	23	1.99
28992564--28992673	43	2.6	43	81	4	125	27	17	26	29	1.97
28993172--28993219	23	2.1	23	96	0	87	22	4	14	58	1.54
28999092--28999130	11	3.5	11	78	0	51	56	10	0	33	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29006255--29006310	8	6.8	9	78	17	52	71	0	0	28	0.86
29006267--29006317	23	2.2	24	92	3	86	76	0	0	23	0.79
29010249--29010402	61	2.5	61	87	5	215	42	1	3	52	1.28
29010727--29010753	3	9.0	3	100	0	54	33	66	0	0	0.92
29012811--29012889	28	2.8	28	84	5	88	20	22	17	39	1.92
29012962--29013090	60	2.2	60	82	0	150	30	24	14	31	1.95
29013211--29013313	53	1.9	53	86	0	143	29	26	11	33	1.91
29019696--29019757	17	3.6	17	78	10	72	66	0	6	27	1.16
29019695--29019771	34	2.2	35	93	2	129	63	0	6	29	1.19
29019777--29019842	25	2.8	24	77	6	71	65	4	6	24	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153