genome.fa.s18.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  125  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39401231--39401307	23	3.3	23	85	0	91	18	16	22	42	1.89
39412313--39412363	11	4.5	11	87	2	66	25	25	0	49	1.51
39412314--39412363	22	2.2	23	92	3	84	24	26	0	50	1.50
39412438--39412486	25	1.9	25	83	4	62	59	2	12	26	1.44
39412993--39413043	21	2.4	22	87	9	70	11	5	11	70	1.32
39418742--39418768	14	1.9	14	100	0	54	14	59	7	18	1.58
39420556--39420580	10	2.5	10	100	0	50	48	0	8	44	1.32
39420563--39420706	56	2.5	57	75	12	152	47	8	9	34	1.67
39420676--39420730	26	2.1	26	96	0	101	60	9	7	23	1.52
39420729--39421617	28	30.4	28	82	10	980	26	0	23	49	1.52
39420745--39420819	29	2.7	26	95	2	96	26	0	21	52	1.47
39421032--39421073	23	2.0	20	95	5	57	21	0	23	54	1.44
39420729--39421617	175	5.1	170	85	7	866	26	0	23	49	1.52
39420729--39421617	57	15.2	56	83	10	1043	26	0	23	49	1.52
39421694--39421743	25	2.0	25	88	4	73	38	14	4	44	1.63
39421857--39421908	24	2.2	24	85	0	68	1	23	30	44	1.64
39422164--39422209	18	2.6	18	82	0	56	39	8	30	21	1.84
39423931--39423978	20	2.3	20	92	3	78	60	0	0	39	0.97
39426122--39426293	40	4.3	40	88	2	222	25	27	21	25	1.99
39426124--39426346	40	5.6	39	83	5	216	25	27	21	25	1.99
39426122--39426346	80	2.8	79	80	7	240	25	27	21	25	1.99
39426278--39426355	40	1.9	41	82	10	97	26	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39428234--39428869	152	4.2	150	90	4	961	51	7	9	30	1.63
39428234--39428869	305	2.1	305	90	3	996	51	7	9	30	1.63
39430401--39430453	25	2.1	25	89	0	79	50	20	5	22	1.69
39451073--39451171	47	2.1	47	81	3	110	25	15	23	36	1.93
39454643--39454695	23	2.3	23	93	0	88	24	18	24	32	1.97
39459552--39459632	26	3.2	26	62	28	64	23	14	28	33	1.94
39459856--39459887	16	2.0	16	93	0	55	59	0	15	25	1.36
39463503--39463546	20	2.2	20	100	0	88	52	15	9	22	1.71
39469142--39469571	29	14.8	29	85	1	531	39	13	26	20	1.89
39470142--39470193	23	2.3	23	78	15	56	15	7	28	48	1.73
39479683--39479743	29	2.1	29	93	0	104	36	13	22	27	1.92
39480332--39480402	25	2.8	25	79	8	81	29	19	21	29	1.98
39481388--39482197	270	3.0	270	89	1	1225	35	15	10	38	1.81
39491671--39491726	28	2.0	28	96	0	103	41	17	8	32	1.81
39498012--39498050	21	1.9	21	89	5	62	15	25	15	43	1.86
39502837--39502932	20	4.8	20	73	0	84	19	22	21	35	1.96
39502839--39502939	40	2.5	40	80	0	121	18	22	21	36	1.95
39506154--39506224	36	2.0	36	88	0	106	38	28	8	25	1.85
39506135--39508137	335	6.0	335	95	0	3533	38	22	9	29	1.86
39506947--39506977	16	1.9	16	100	0	62	38	19	0	41	1.51
39507282--39507312	16	1.9	16	100	0	62	38	19	0	41	1.51
39509518--39509573	27	2.2	25	87	6	76	46	1	1	50	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39509993--39510030	19	2.0	19	85	10	51	21	42	0	36	1.53
39526469--39526506	19	2.0	19	85	10	51	21	42	0	36	1.53
39528294--39528338	15	2.8	16	83	6	56	26	0	24	48	1.51
39528373--39528529	39	3.9	39	83	4	172	33	3	19	44	1.66
39531373--39531419	22	2.0	24	88	8	71	21	8	6	63	1.44
39533990--39534125	50	2.7	50	76	4	141	30	22	22	25	1.99
39533979--39534235	100	2.6	102	79	6	292	30	23	21	24	1.99
39534060--39534406	172	2.0	172	81	5	398	29	22	21	26	1.99
39534262--39534502	50	4.8	50	68	11	161	29	21	22	26	1.99
39533856--39534879	272	3.8	272	95	0	1780	29	23	21	25	1.99
39534232--39534507	100	2.8	102	84	7	327	29	22	22	26	1.99
39534332--39534678	172	2.0	172	85	3	466	28	23	22	25	1.99
39534534--39534773	50	4.8	50	70	11	179	30	24	21	23	1.99
39534525--39534779	100	2.5	100	83	6	304	30	24	21	22	1.99
39534795--39534910	49	2.3	50	82	2	153	28	23	23	25	1.99
39548850--39548882	17	1.9	17	93	0	57	36	21	30	12	1.90
39549343--39549497	50	3.1	50	69	7	134	30	22	21	25	1.99
39549369--39549617	100	2.5	101	81	3	272	31	23	20	24	1.98
39549373--39549617	50	4.9	50	71	7	169	31	23	20	24	1.98
39549634--39549749	49	2.3	49	79	8	137	26	24	24	25	2.00
39551294--39551340	22	2.0	24	88	8	71	21	8	6	63	1.44
39552805--39552987	92	2.0	92	97	0	348	48	13	7	30	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39562046--39562085	17	2.3	18	95	4	73	42	20	0	37	1.52
39562615--39562924	108	2.9	107	85	5	396	31	17	18	32	1.94
39578685--39578775	38	2.4	37	83	3	119	32	15	20	30	1.94
39584714--39584760	19	2.6	18	87	12	69	70	2	4	23	1.16
39596515--39596585	26	2.7	26	93	0	124	26	22	21	29	1.99
39599904--39601123	610	2.0	610	93	0	2064	36	15	15	32	1.89
39601804--39601855	15	3.2	15	73	19	50	44	0	1	53	1.11
39601943--39601977	16	2.2	16	89	0	52	57	2	0	40	1.14
39604190--39604724	289	1.9	289	92	0	910	34	19	8	37	1.83
39614621--39614820	47	4.2	47	89	2	301	28	31	8	32	1.87
39614621--39614820	96	2.1	94	90	1	310	28	31	8	32	1.87
39615206--39615463	119	2.2	120	85	6	337	25	26	22	25	2.00
39615187--39615470	40	7.1	40	86	5	353	24	27	22	25	2.00
39618113--39618147	18	1.9	18	88	0	52	54	0	2	42	1.15
39620009--39620044	15	2.4	15	95	0	63	30	5	11	52	1.59
39621307--39621346	8	5.0	8	96	0	71	77	0	0	22	0.77
39632015--39632067	19	2.8	19	97	0	97	33	26	22	16	1.96
39636251--39636317	30	2.2	30	89	0	98	22	32	19	25	1.97
39636816--39637080	143	1.9	143	86	1	379	43	17	15	23	1.88
39642096--39642138	20	2.2	20	86	0	59	76	2	18	2	1.00
39649298--39649330	17	1.9	17	100	0	66	36	27	6	30	1.81
39650440--39650474	17	2.0	18	88	5	54	45	2	5	45	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39653420--39653548	43	3.0	42	84	4	161	47	3	24	25	1.66
39653420--39653548	42	3.0	43	85	4	172	47	3	24	25	1.66
39656020--39656068	18	2.8	18	90	3	73	34	20	0	44	1.52
39661077--39661206	43	3.0	42	82	7	163	48	3	23	25	1.65
39664419--39664479	28	2.2	28	82	11	72	39	1	1	57	1.18
39664441--39664500	27	2.2	27	85	5	77	40	0	0	60	0.97
39671813--39671845	17	1.9	17	93	0	57	42	0	15	42	1.46
39674027--39674153	35	3.6	35	80	5	139	35	15	25	23	1.94
39677588--39677687	46	2.2	45	87	1	137	46	19	16	19	1.85
39677677--39677800	45	2.8	45	92	2	205	35	16	22	25	1.95
39677769--39677930	45	3.6	45	82	8	186	45	16	19	18	1.86
39679541--39679572	13	2.5	13	100	0	64	6	28	34	31	1.82
39683040--39683245	103	2.0	103	97	0	385	29	10	20	39	1.85
39683850--39683897	18	2.7	18	100	0	96	54	4	0	41	1.20
39684521--39684557	18	2.0	19	89	5	58	5	43	0	51	1.24
39688084--39688132	20	2.5	20	81	15	66	14	22	6	57	1.59
39688390--39688426	18	2.0	19	94	5	67	48	5	21	24	1.71
39689634--39689764	41	3.2	41	84	0	172	22	19	6	51	1.70
39692306--39692354	20	2.5	20	81	15	66	14	22	6	57	1.59
39692556--39692750	50	3.9	50	79	2	205	22	27	22	28	1.99
39700296--39700438	50	2.9	49	84	2	178	24	29	20	25	1.99
39706190--39706229	19	2.1	19	100	0	80	25	5	15	55	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39712972--39713100	51	2.5	51	78	0	159	40	13	6	39	1.70
39716149--39716275	51	2.5	51	77	0	155	41	14	5	38	1.69
39716862--39716935	36	2.1	36	100	0	148	25	10	16	47	1.79
39717410--39717641	56	4.1	56	98	0	446	45	9	21	22	1.81
39728152--39728229	25	3.2	24	80	7	68	26	23	24	25	2.00
39744020--39744065	23	2.0	23	100	0	92	52	0	17	30	1.45
39744870--39744930	30	2.0	30	84	9	79	50	11	4	32	1.60
39746888--39747177	50	5.7	53	77	12	232	28	23	26	21	1.99
39746940--39747177	100	2.4	99	82	0	296	28	23	26	21	1.99
39758731--39758893	43	3.8	42	84	5	177	33	23	14	27	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153