genome.fa.s18.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  39  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13309279--13309305	13	2.1	13	100	0	54	29	0	22	48	1.51
13309484--13309581	33	2.9	35	73	19	91	50	0	3	46	1.17
13323262--13323340	41	1.9	41	81	0	95	32	24	18	24	1.97
13331632--13331662	15	2.1	15	100	0	62	38	6	32	22	1.80
13331819--13331857	18	2.3	17	86	8	53	38	5	12	43	1.65
13332600--13332629	15	2.0	15	93	0	51	23	6	46	23	1.75
13335990--13336020	15	2.1	15	100	0	62	38	6	32	22	1.80
13336177--13336215	18	2.3	17	86	8	53	38	5	12	43	1.65
13345737--13345778	6	7.0	6	88	0	57	52	2	26	19	1.58
13348370--13348471	40	2.5	40	88	0	150	15	22	32	29	1.95
13350304--13350361	27	2.1	28	87	3	82	34	25	8	31	1.86
13352835--13352902	16	4.2	16	88	0	109	29	0	32	38	1.58
13353118--13353172	15	3.4	16	80	16	53	50	1	0	47	1.11
13353138--13353172	18	2.0	17	88	5	52	54	0	0	45	0.99
13353051--13353362	157	2.0	157	96	0	570	44	3	3	48	1.35
13353275--13353316	15	2.7	16	82	14	52	52	2	0	45	1.13
13353284--13353325	15	2.9	15	82	10	52	52	0	0	47	1.00
13353278--13353623	120	2.9	120	97	0	665	48	6	2	43	1.39
13353415--13353449	18	2.0	17	88	5	52	54	0	0	45	0.99
13362614--13362666	23	2.4	22	76	20	56	9	18	1	69	1.25
13366812--13366858	21	2.2	22	92	3	78	21	38	19	21	1.94
13368710--13368755	12	3.8	12	82	2	56	10	8	2	78	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13368716--13368784	30	2.3	30	82	7	79	15	5	2	75	1.12
13368783--13368829	22	2.1	22	88	4	67	19	2	4	74	1.09
13368901--13368942	14	3.1	13	80	19	50	78	2	2	16	0.96
13368927--13368981	23	2.3	23	84	3	65	72	3	7	16	1.21
13368951--13369003	13	4.2	13	74	11	56	79	1	9	9	1.02
13369672--13369745	35	2.1	35	97	0	139	39	17	14	28	1.89
13371862--13371895	18	1.9	18	88	5	52	70	0	2	26	1.01
13379975--13380005	16	1.9	16	93	0	53	54	12	0	32	1.38
13380286--13380317	14	2.3	14	100	0	64	43	31	12	12	1.80
13380838--13380961	43	2.9	43	80	11	128	30	29	19	20	1.97
13384037--13384113	28	2.8	28	80	7	86	28	29	19	22	1.98
13384067--13384138	28	2.5	28	81	4	72	27	26	23	22	1.99
13384118--13384181	27	2.3	28	81	13	78	28	23	18	29	1.98
13383928--13384311	172	2.2	172	81	4	416	27	26	21	25	1.99
13384825--13384887	27	2.3	27	83	5	74	39	17	20	22	1.92
13386425--13386564	70	2.0	70	95	0	253	34	12	25	27	1.92
13387246--13387326	39	2.1	39	81	4	92	32	7	22	38	1.82
13407464--13407508	18	2.5	18	89	7	65	80	0	15	4	0.87
13419163--13419207	21	2.1	22	84	12	58	53	0	2	44	1.13
13424119--13424176	30	1.9	30	86	13	84	39	8	0	51	1.33
13428012--13428048	13	2.9	13	92	4	58	43	24	0	32	1.55
13428040--13428079	13	3.1	13	88	0	62	40	22	7	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13428755--13428807	25	2.2	24	89	3	79	73	1	1	22	1.03
13431318--13431353	18	2.0	18	88	0	54	16	0	5	77	0.94
13433818--13433842	7	3.6	7	100	0	50	84	0	0	16	0.63
13435450--13435498	24	2.0	24	88	0	71	30	22	32	14	1.93
13435532--13435637	26	4.3	24	81	8	99	35	25	22	16	1.94
13435561--13435635	26	2.9	26	90	2	116	37	24	22	16	1.93
13440639--13440677	14	2.8	14	84	0	51	23	5	2	69	1.21
13452767--13452935	51	3.4	51	72	12	172	37	15	15	31	1.89
13452768--13453004	96	2.5	95	86	0	321	37	15	17	29	1.91
13452767--13453004	51	4.9	51	69	14	171	36	15	17	29	1.91
13452912--13453070	44	3.6	44	83	5	205	33	18	20	27	1.96
13453082--13453190	50	2.2	50	83	0	128	31	17	17	33	1.93
13456949--13457044	40	2.4	40	98	0	183	19	23	27	29	1.99
13460743--13460773	3	10.3	3	100	0	62	0	32	0	67	0.91
13462235--13462290	24	2.3	24	90	0	85	39	5	7	48	1.54
13468305--13468354	16	3.1	16	82	8	57	62	2	2	34	1.18
13468486--13468516	15	2.0	16	93	6	55	58	0	0	41	0.98
13470046--13470110	11	5.8	12	76	18	68	27	30	1	40	1.66
13470070--13470169	51	2.0	51	86	4	139	28	25	3	44	1.69
13470326--13470356	15	2.1	15	93	0	53	29	3	6	61	1.37
13472593--13472641	14	3.6	14	74	20	50	40	34	0	24	1.55
13472593--13472662	33	2.1	35	86	5	99	41	31	1	25	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13472627--13472753	21	6.0	21	81	1	137	46	25	2	25	1.65
13472627--13472753	43	3.0	43	83	6	159	46	25	2	25	1.65
13475111--13475169	30	2.0	30	86	6	84	40	0	38	20	1.53
13475388--13475415	9	3.1	9	100	0	56	32	10	10	46	1.73
13475467--13475506	9	4.4	9	93	0	71	40	22	12	25	1.89
13476846--13477375	126	4.2	125	91	2	834	29	23	17	30	1.97
13476846--13477375	251	2.1	251	90	3	836	29	23	17	30	1.97
13477526--13477583	16	3.7	16	70	21	50	50	29	0	20	1.49
13477889--13477938	16	3.1	17	80	8	50	62	2	4	32	1.25
13477948--13477972	13	1.9	13	100	0	50	24	12	0	64	1.27
13478272--13478376	50	2.1	50	94	0	183	30	18	8	42	1.80
13481183--13481269	45	1.9	45	90	0	138	22	17	36	22	1.94
13484092--13484426	33	9.7	33	70	21	156	21	20	26	31	1.98
13484087--13484319	104	2.3	103	92	1	378	21	21	27	30	1.98
13484219--13484417	71	2.7	75	84	6	257	21	18	27	32	1.96
13486146--13486218	21	3.5	21	71	0	65	39	15	26	19	1.90
13486161--13486273	42	2.7	43	83	5	142	42	16	24	15	1.88
13495046--13495101	15	3.4	16	78	9	60	28	7	17	46	1.75
13495046--13495116	16	4.4	16	77	10	56	29	7	19	43	1.77
13500895--13501042	74	2.0	74	100	0	296	32	20	21	25	1.97
13503578--13503624	24	2.0	24	91	0	76	46	10	2	40	1.50
13504836--13504900	13	5.0	14	68	22	52	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13504870--13504908	20	2.0	20	94	0	69	58	0	0	41	0.98
13506214--13506278	16	4.1	16	91	0	94	33	0	35	30	1.58
13506511--13506545	18	2.0	17	88	5	52	54	0	0	45	0.99
13506631--13506665	18	2.0	17	88	5	52	54	0	0	45	0.99
13517541--13517588	21	2.3	21	96	0	87	22	37	10	29	1.88
13519367--13519412	24	1.9	24	100	0	92	52	26	4	17	1.63
13520120--13520372	41	6.2	41	94	0	425	20	27	21	30	1.98
13522141--13522165	13	1.9	13	100	0	50	40	24	4	32	1.73
13524960--13525303	50	6.9	50	94	0	553	21	32	22	24	1.98
13531776--13531916	50	2.8	51	90	1	221	22	29	23	24	1.99
13536114--13536174	18	3.4	19	68	23	51	44	14	8	32	1.75
13545413--13545445	11	3.0	11	100	0	66	9	27	0	63	1.24
13545733--13545776	23	1.9	23	90	0	70	59	9	2	29	1.41
13546927--13546969	22	2.0	22	81	9	52	39	13	2	44	1.57
13551701--13551768	34	2.0	34	85	0	91	35	0	14	50	1.44
13563507--13563699	47	4.0	48	81	8	196	23	17	29	30	1.97
13563511--13563718	93	2.1	97	80	8	228	25	16	28	28	1.97
13564426--13564675	83	3.0	83	98	0	482	29	6	21	42	1.79
13566091--13566125	13	2.7	13	100	0	70	42	8	0	48	1.33
13570273--13570367	30	3.1	31	78	4	102	30	6	15	47	1.71
13570359--13570553	48	3.9	48	83	7	255	29	16	22	31	1.96
13570359--13570552	102	1.9	102	92	0	325	29	15	22	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13577185--13577240	6	9.3	6	84	5	69	50	3	0	46	1.19
13577302--13577345	8	5.4	8	81	5	52	38	2	2	56	1.24
13577306--13577346	17	2.3	18	87	4	57	34	2	2	60	1.23
13577777--13577801	11	2.3	11	100	0	50	72	8	0	20	1.10
13578065--13578229	43	3.8	43	91	1	251	25	27	21	25	1.99
13578544--13578613	21	3.3	21	89	0	104	5	44	17	32	1.72
13578569--13578766	87	2.3	87	89	1	290	10	31	19	38	1.85
13578650--13578700	21	2.4	21	86	0	66	3	41	17	37	1.68
13581764--13581856	3	30.3	3	76	12	82	30	3	3	63	1.26
13581776--13581861	33	2.6	34	85	7	108	30	4	2	62	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153