genome.fa.s18.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  27  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9464986--9465036	24	2.1	24	85	0	66	15	13	25	45	1.83
9465065--9465124	25	2.4	25	85	2	84	16	15	30	38	1.89
9486678--9486792	40	2.8	41	76	10	128	36	20	21	20	1.95
9486905--9486950	20	2.4	19	85	7	58	26	4	4	65	1.30
9487292--9487321	15	2.1	15	93	6	53	30	0	36	33	1.58
9487450--9487548	7	14.1	7	73	12	51	16	2	41	40	1.59
9487450--9487523	21	3.5	20	73	14	69	14	2	45	36	1.60
9490840--9490993	43	3.6	43	72	7	143	31	17	21	29	1.96
9490750--9490944	86	2.3	85	78	5	207	29	16	22	30	1.96
9490795--9490964	86	2.0	86	80	4	191	31	16	21	30	1.95
9493440--9493625	93	2.0	93	94	0	327	41	10	12	35	1.78
9496411--9496464	21	2.6	21	96	0	99	25	9	33	31	1.88
9496676--9496739	33	2.0	32	87	3	92	46	0	3	50	1.17
9500653--9500797	41	3.5	41	85	6	179	23	29	20	26	1.98
9500735--9500920	41	4.5	41	87	2	241	32	23	17	26	1.97
9501253--9501679	199	2.2	196	91	3	669	41	15	4	38	1.66
9507785--9507929	41	3.5	41	85	6	188	22	29	20	26	1.99
9507867--9508052	41	4.5	41	90	2	268	32	24	18	25	1.97
9509269--9509293	13	1.9	13	100	0	50	40	24	4	32	1.73
9510837--9510930	9	10.4	9	89	0	125	42	25	7	24	1.80
9514428--9514980	274	2.0	272	97	1	1038	47	5	13	33	1.64
9518273--9518324	24	2.2	24	89	0	77	55	9	1	32	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9520243--9520294	24	2.2	24	89	0	77	55	9	1	32	1.43
9525535--9525604	26	2.8	24	74	18	70	52	1	2	42	1.24
9525772--9525819	22	2.2	21	88	3	69	22	0	29	47	1.51
9525856--9525904	13	3.4	14	78	13	55	16	0	32	51	1.45
9525922--9525954	16	2.1	16	88	11	50	42	0	0	57	0.98
9526200--9526262	20	3.1	20	77	11	74	50	0	4	44	1.23
9526203--9526262	10	5.8	10	78	11	59	48	0	5	46	1.24
9526648--9526702	27	2.0	27	96	0	101	54	7	9	29	1.58
9530515--9530658	43	3.3	43	93	0	225	21	16	28	33	1.95
9536003--9536125	28	4.5	28	84	2	151	34	12	25	28	1.92
9536006--9536125	55	2.2	54	85	5	152	34	11	25	29	1.91
9538794--9538916	25	5.0	25	70	13	94	17	26	21	34	1.96
9538813--9538950	72	1.9	73	80	7	165	17	26	19	36	1.94
9540240--9540296	14	4.4	13	72	16	55	61	0	1	36	1.07
9540280--9540312	15	2.1	17	88	11	52	60	0	0	39	0.97
9540898--9541275	189	2.0	189	99	0	747	31	19	10	39	1.85
9553218--9553380	81	2.0	81	97	0	308	34	15	15	33	1.90
9580077--9580117	21	2.0	21	90	0	64	29	21	29	19	1.98
9585595--9585631	18	2.1	18	100	0	74	48	5	16	29	1.68
9585690--9585733	18	2.4	19	81	14	56	31	2	4	61	1.28
9588965--9589011	23	2.0	23	91	0	76	42	4	10	42	1.59
9589551--9589586	18	2.1	17	89	5	54	52	0	13	33	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9590317--9590365	21	2.4	20	75	3	53	20	18	24	36	1.94
9590750--9590800	25	2.0	25	96	0	93	37	5	19	37	1.76
9593324--9593368	22	2.1	21	87	4	63	13	17	26	42	1.86
9593450--9593838	43	9.0	43	90	0	580	28	32	17	21	1.97
9593438--9593899	129	3.6	128	84	5	517	29	30	17	21	1.96
9598826--9598910	39	2.2	39	85	4	109	21	22	18	37	1.94
9598913--9598957	22	2.0	22	91	8	74	26	0	4	68	1.08
9599311--9599339	8	3.8	8	90	9	51	37	48	0	13	1.43
9599320--9599360	21	1.9	22	85	5	57	39	39	0	21	1.54
9599547--9599585	16	2.4	17	95	4	71	46	0	0	53	1.00
9599696--9599763	21	3.2	20	76	17	66	35	41	0	23	1.55
9599771--9599859	7	12.6	7	73	2	61	47	29	1	22	1.59
9599770--9599917	21	7.0	21	71	6	82	47	27	1	24	1.60
9600173--9600218	20	2.4	20	82	7	51	63	4	4	28	1.33
9600229--9600333	41	2.6	41	92	0	174	32	29	19	19	1.96
9603496--9603522	2	13.5	2	100	0	54	51	0	0	48	1.00
9603522--9603549	2	14.0	2	100	0	56	50	0	50	0	1.00
9611577--9611607	9	3.4	9	90	0	53	25	12	22	38	1.90
9614358--9614413	24	2.3	24	80	14	62	39	16	26	17	1.91
9614400--9614559	24	6.5	24	70	11	74	34	21	26	18	1.96
9614377--9614515	72	1.9	72	82	5	174	31	20	28	18	1.97
9614434--9614514	23	3.4	22	75	11	63	29	20	30	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9614495--9614553	26	2.3	26	88	2	93	38	23	22	15	1.92
9614495--9614568	26	2.9	25	78	13	87	39	24	21	14	1.91
9619322--9619354	17	1.9	17	93	0	57	12	18	3	66	1.36
9620331--9620376	19	2.4	19	85	10	58	39	17	6	36	1.76
9620343--9620388	19	2.6	18	86	10	67	39	10	2	47	1.51
9621619--9621675	11	4.9	11	75	10	51	38	12	3	45	1.59
9621622--9621675	24	2.3	24	83	3	74	37	12	3	46	1.60
9628714--9628766	27	1.9	27	88	3	79	20	11	7	60	1.55
9630459--9630515	6	8.8	6	75	21	53	75	0	22	1	0.90
9630459--9630513	20	2.8	20	77	5	67	74	0	23	1	0.91
9630615--9630670	29	2.0	29	92	3	96	55	5	12	26	1.58
9633409--9633858	44	10.0	45	72	8	308	26	23	18	31	1.98
9633411--9633831	181	2.3	180	84	7	577	25	23	18	31	1.97
9633411--9633815	92	4.5	89	85	6	539	25	23	19	31	1.98
9641529--9641568	20	2.0	20	95	0	71	30	12	25	32	1.92
9645442--9645481	14	2.9	14	85	3	55	50	12	5	32	1.62
9650704--9650733	15	2.0	15	100	0	60	26	20	26	26	1.99
9658803--9658852	17	2.7	20	78	18	70	10	0	44	46	1.37
9663511--9663546	18	1.9	19	94	5	65	63	0	0	36	0.94
9663505--9663567	29	2.2	29	88	0	90	61	0	1	36	1.05
9667106--9667165	31	1.9	31	86	0	84	25	16	10	48	1.77
9668717--9668749	16	1.9	18	88	11	52	60	6	12	21	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9668941--9668971	14	2.2	14	94	0	53	0	9	16	74	1.07
9669536--9669600	32	2.1	32	94	2	114	47	13	9	29	1.74
9672769--9672882	39	2.9	39	100	0	228	43	16	7	31	1.77
9678925--9678973	25	1.9	26	91	4	82	38	10	16	34	1.82
9685302--9685361	32	1.9	31	86	3	84	48	6	5	40	1.51
9688178--9688270	45	2.0	47	85	8	129	63	8	15	12	1.51
9709375--9709499	42	3.0	42	97	0	232	27	25	24	22	2.00
9720124--9720227	41	2.7	38	79	5	111	35	21	14	28	1.92
9721091--9721126	17	2.0	18	89	10	56	0	27	0	72	0.85
9721180--9721245	20	3.2	20	85	8	71	21	4	4	69	1.24
9721279--9721328	19	2.6	20	84	6	59	36	8	4	52	1.50
9722016--9722051	18	2.1	17	94	5	63	50	0	0	50	1.00
9723548--9723625	3	25.7	3	75	7	68	64	2	3	29	1.25
9723681--9723734	15	3.5	14	77	20	54	74	1	1	22	1.02
9723681--9723729	17	3.0	17	82	8	66	73	2	2	22	1.04
9723853--9723886	17	1.9	18	88	5	52	70	8	2	17	1.25
9736546--9736597	26	2.0	26	85	14	72	34	1	7	55	1.39
9747906--9747978	10	7.5	10	68	27	50	38	2	0	58	1.12
9747885--9747996	30	3.7	28	81	11	125	38	2	0	58	1.19
9747895--9747978	39	2.1	40	82	8	100	39	3	0	57	1.16
9750059--9750156	28	3.5	28	86	4	117	31	12	27	28	1.93
9762628--9762657	6	5.0	6	100	0	60	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9766805--9766833	3	9.7	3	100	0	58	65	0	34	0	0.93
9766878--9766902	3	8.3	3	100	0	50	36	0	32	32	1.58
9767170--9767308	3	46.3	3	100	0	278	66	0	33	0	0.92
9769924--9769981	9	6.4	9	84	7	82	24	12	22	41	1.87
9778236--9778302	34	1.9	35	93	3	118	32	8	11	46	1.72
9779596--9779627	16	2.0	16	93	0	55	25	3	0	71	1.00
9785620--9785682	24	2.4	26	79	15	76	44	1	1	52	1.20
9787709--9787770	31	2.0	32	87	3	90	53	0	6	40	1.27
9792589--9792654	29	2.2	32	81	13	86	48	12	7	31	1.68
9795458--9795521	30	2.1	32	88	5	96	31	9	7	51	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153