genome.fa.s18.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  34  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11691189--11691268	41	1.9	42	84	2	108	17	33	26	22	1.96
11692365--11692389	8	3.1	8	100	0	50	40	24	24	12	1.88
11696846--11697067	111	2.0	111	100	0	444	33	11	15	39	1.83
11697153--11697582	214	2.0	215	99	0	844	34	12	12	40	1.81
11697575--11697668	25	3.7	25	67	18	59	35	7	7	50	1.59
11697587--11697692	51	2.1	51	98	0	203	37	4	9	48	1.57
11697871--11697910	20	2.0	20	90	0	62	50	12	10	27	1.72
11697859--11697925	34	1.9	35	87	3	100	46	11	8	32	1.72
11702132--11702158	13	2.1	13	100	0	54	37	0	14	48	1.45
11705389--11705433	21	2.1	21	100	0	90	26	20	28	24	1.99
11705389--11705441	21	2.5	21	93	0	79	26	18	30	24	1.98
11706776--11706817	19	2.1	20	79	20	52	50	0	0	50	1.00
11706781--11706848	30	2.3	29	82	12	77	44	1	1	52	1.19
11710395--11710448	26	2.1	26	100	0	108	40	7	11	40	1.69
11710400--11710456	26	2.2	26	90	0	87	45	5	14	35	1.67
11712703--11712780	39	2.0	39	100	0	156	41	7	10	41	1.68
11731092--11731153	31	2.0	31	100	0	124	38	16	12	32	1.86
11734302--11734551	133	1.9	133	90	0	401	30	19	19	30	1.96
11736837--11736887	24	2.1	25	82	10	61	37	3	3	54	1.37
11737333--11737382	23	2.3	23	86	6	68	52	14	8	26	1.68
11737416--11737446	3	10.3	3	100	0	62	67	0	0	32	0.91
11756623--11756679	16	3.6	16	95	0	87	29	0	36	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11756925--11756959	18	2.0	17	88	5	52	54	0	0	45	0.99
11756884--11757127	79	3.1	79	65	17	220	47	3	2	46	1.33
11757059--11757100	15	2.7	16	82	14	52	52	2	0	45	1.13
11756812--11757125	154	2.0	156	96	1	578	44	3	5	47	1.41
11757068--11757109	15	2.9	15	82	10	52	52	0	0	47	1.00
11757189--11757220	16	1.9	17	93	6	57	46	0	0	53	1.00
11762004--11762038	18	1.9	18	94	0	61	60	0	0	40	0.97
11769504--11769540	19	2.0	19	94	5	67	37	8	21	32	1.83
11770526--11770571	20	2.2	21	84	7	58	34	0	2	63	1.07
11771605--11771663	31	1.9	31	86	6	84	37	8	3	50	1.49
11773678--11773781	22	4.4	24	81	7	108	15	24	20	40	1.90
11773681--11773735	25	2.2	24	90	0	65	16	25	21	36	1.94
11777128--11777160	15	2.2	15	94	0	57	18	3	48	30	1.63
11780927--11780957	15	2.1	15	100	0	62	25	6	0	67	1.14
11786499--11787024	197	2.7	196	86	3	698	27	15	16	40	1.89
11793044--11793101	22	2.6	22	81	7	64	41	15	5	37	1.70
11793080--11793152	19	3.8	19	88	0	101	36	15	8	39	1.77
11793073--11793152	38	2.2	36	86	4	115	36	16	7	40	1.77
11793477--11793975	132	3.8	132	92	1	804	29	24	17	28	1.97
11795344--11795396	22	2.5	21	82	11	63	13	11	1	73	1.18
11800389--11800465	19	3.7	21	76	13	68	41	15	5	37	1.70
11800389--11800446	22	2.6	22	81	7	64	41	17	5	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11800425--11800478	19	2.8	19	88	0	90	37	14	9	38	1.79
11801827--11801873	20	2.4	19	79	6	58	31	2	0	65	1.04
11801827--11801882	20	2.8	20	71	12	53	32	1	0	66	1.03
11805702--11805751	25	2.0	25	100	0	100	28	0	0	72	0.86
11805702--11805745	7	5.7	7	80	19	52	20	0	0	79	0.73
11806889--11806931	22	2.0	22	86	9	61	67	2	0	30	1.03
11829010--11829044	18	2.0	17	88	5	52	37	0	0	62	0.95
11830686--11830726	22	1.9	22	85	5	57	60	0	0	39	0.96
11841186--11841238	13	4.1	13	85	0	79	35	28	7	28	1.84
11841254--11842511	642	1.9	649	89	4	1965	40	12	13	32	1.83
11853467--11853500	3	11.3	3	100	0	68	32	0	0	67	0.91
11854952--11855085	49	2.7	49	84	2	162	23	21	28	26	1.99
11856611--11856642	13	2.5	13	100	0	64	15	6	6	71	1.26
11856798--11856840	8	4.9	9	81	13	54	32	0	2	65	1.06
11860531--11860593	28	2.2	28	97	2	117	50	3	38	7	1.47
11873287--11873330	18	2.3	20	88	7	65	63	2	0	34	1.07
11874264--11874380	59	2.0	59	91	0	189	52	8	11	27	1.67
11875679--11875722	23	1.9	23	81	9	54	45	0	2	52	1.13
11883377--11883403	12	2.2	12	100	0	54	22	48	0	29	1.51
11886443--11886587	46	3.2	46	92	4	240	34	16	18	30	1.93
11888474--11888516	17	2.6	16	82	10	50	41	2	2	53	1.26
11894387--11894415	15	2.0	15	93	6	51	34	13	0	51	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11897215--11897256	21	2.0	20	86	13	59	50	0	9	40	1.35
11897447--11897543	40	2.4	42	75	3	99	21	30	30	16	1.95
11897710--11897889	90	2.0	90	98	0	351	46	14	8	31	1.74
11898017--11898072	22	2.5	23	82	2	69	51	1	1	44	1.22
11898048--11898087	16	2.5	16	91	0	62	47	2	7	42	1.45
11906922--11906982	21	2.9	22	68	22	58	36	1	1	60	1.16
11906942--11906983	17	2.5	17	80	11	50	35	2	2	59	1.23
11908481--11908532	18	2.7	20	74	17	56	59	0	3	36	1.16
11908624--11908661	20	1.9	20	88	0	58	50	10	7	31	1.66
11913180--11913217	17	2.4	17	86	8	53	36	0	2	60	1.11
11916645--11916700	23	2.5	22	78	16	62	50	5	1	42	1.35
11920323--11920417	35	2.7	35	98	0	181	66	0	2	31	1.04
11921584--11921617	11	3.1	11	100	0	68	26	29	17	26	1.98
11923993--11924040	24	2.1	23	84	7	62	56	2	10	31	1.45
11924417--11924475	29	2.0	30	83	9	77	50	0	3	45	1.18
11925737--11925812	27	2.8	27	90	4	118	17	25	38	19	1.93
11925871--11925923	22	2.3	23	84	12	74	66	1	30	1	1.13
11935840--11935880	21	2.0	21	90	0	64	29	21	29	19	1.98
11937786--11937819	16	2.1	16	88	0	50	50	14	17	17	1.79
11943476--11943522	21	2.2	22	92	3	78	21	38	19	21	1.94
11949175--11949242	33	2.1	33	97	0	127	36	4	20	38	1.73
11953389--11953417	4	7.2	4	100	0	58	75	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11966551--11966730	94	1.9	93	84	5	238	32	14	13	38	1.86
11967189--11967345	78	2.0	78	100	0	314	43	20	12	23	1.86
11981669--11981851	91	2.0	89	91	2	294	26	13	28	31	1.94
11981809--11981895	44	2.0	44	100	0	174	32	16	20	31	1.94
11983067--11983227	51	3.3	50	84	11	235	27	24	15	32	1.95
11983071--11983230	44	3.5	44	88	6	212	28	24	16	31	1.96
11987186--11987218	16	2.1	16	100	0	66	42	18	12	27	1.85
11988085--11988118	5	6.6	5	96	3	59	20	2	41	35	1.68
11992151--11992322	22	7.8	22	85	0	218	29	9	18	43	1.80
11992148--11992317	88	1.9	88	93	0	295	30	8	17	42	1.80
11992148--11992322	44	4.0	44	87	0	260	29	9	17	43	1.80
11994765--11994826	29	2.2	29	88	2	90	27	9	12	50	1.72
12009131--12009193	25	2.4	26	84	10	76	30	30	19	20	1.97
12009132--12009319	76	2.5	76	76	2	198	31	22	15	29	1.95
12012905--12012991	44	2.0	44	93	0	147	39	17	12	31	1.87
12024968--12025078	49	2.3	50	82	6	129	30	31	18	19	1.96
12035454--12035521	5	13.2	5	72	20	52	20	1	1	76	0.94
12035454--12035529	15	5.4	14	76	13	75	21	2	1	75	1.00
12035460--12035529	7	9.1	8	72	19	60	21	2	1	74	1.03
12035637--12035698	17	3.8	16	76	16	65	19	3	1	75	1.02
12035657--12035698	22	2.0	21	85	4	57	21	2	0	76	0.90
12035637--12035705	17	4.2	16	70	18	61	18	2	2	75	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12043639--12043679	20	2.0	21	86	13	59	34	7	0	58	1.26
12044061--12044099	19	2.1	19	100	0	78	23	5	15	56	1.59
12059143--12059188	22	2.0	22	87	4	65	21	2	6	69	1.22
12062593--12062660	34	2.0	34	85	0	91	55	4	1	38	1.29
12064393--12064473	31	2.6	31	84	0	108	34	14	23	27	1.94
12065666--12065703	11	3.3	12	85	10	53	63	0	0	36	0.95
12070447--12070484	11	3.3	12	85	10	53	63	0	0	36	0.95
12072633--12072659	13	2.1	13	100	0	54	29	7	22	40	1.81
12084173--12084224	20	2.7	20	81	3	70	44	0	1	53	1.11
12084663--12084725	30	2.1	30	87	0	90	26	4	12	55	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153