genome.fa.s18.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  148  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46270179--46270497	46	7.0	46	89	2	428	38	15	24	21	1.92
46270180--46270520	137	2.5	138	85	3	440	39	15	23	21	1.91
46270707--46270750	17	2.5	17	82	10	54	50	2	15	31	1.57
46271578--46271846	96	2.8	96	80	5	285	28	20	28	22	1.98
46271572--46271848	48	5.8	48	75	9	219	28	20	28	22	1.99
46274036--46274076	17	2.4	17	100	0	82	9	26	46	17	1.79
46274150--46274220	29	2.5	28	84	4	88	26	18	26	28	1.98
46277580--46277683	52	2.0	52	92	3	174	18	26	10	44	1.82
46278077--46278131	8	6.9	8	78	0	56	41	20	25	12	1.87
46278069--46278131	24	2.7	24	85	2	74	44	19	23	12	1.85
46282171--46282269	29	3.4	29	83	1	119	26	17	29	27	1.97
46285942--46286010	9	7.2	9	74	18	59	60	1	0	37	1.06
46285951--46286009	21	2.9	21	78	16	61	62	1	0	35	1.05
46303996--46304038	20	2.2	20	83	8	52	44	20	0	34	1.52
46304135--46304178	21	2.1	21	100	0	88	4	27	18	50	1.66
46306214--46306326	42	2.7	42	86	4	147	29	26	12	31	1.93
46306300--46306402	46	2.2	46	82	1	116	31	26	15	27	1.96
46307126--46307163	20	1.9	20	84	10	51	42	13	23	21	1.88
46309012--46309193	46	4.0	46	89	1	249	39	14	23	21	1.91
46309620--46309720	50	2.0	50	98	0	193	28	11	20	38	1.88
46309900--46309980	31	2.6	31	96	0	144	27	27	17	28	1.97
46309956--46310132	50	3.5	50	86	3	248	25	22	16	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46312802--46312870	36	1.9	36	81	0	84	40	11	17	30	1.85
46313161--46313309	50	3.0	48	82	5	140	30	16	30	22	1.95
46313218--46313334	50	2.3	50	85	0	153	29	18	30	21	1.97
46313224--46313354	50	2.6	50	82	2	147	30	16	32	20	1.94
46313358--46313471	46	2.4	46	75	12	113	35	23	22	18	1.96
46313172--46313499	145	2.2	148	78	4	340	31	18	28	21	1.97
46314650--46314680	12	2.6	12	100	0	62	35	6	9	48	1.62
46317160--46317422	40	6.6	40	86	3	309	26	28	20	24	1.99
46318932--46319080	77	1.9	77	100	0	298	23	22	20	33	1.97
46323821--46323985	83	2.0	83	98	0	321	29	21	20	29	1.98
46325008--46325270	40	6.6	40	87	3	316	27	27	20	24	1.99
46331877--46331914	19	2.0	20	85	15	53	39	23	0	36	1.55
46332144--46332313	92	1.8	93	86	3	245	31	27	19	22	1.98
46332139--46332310	46	3.7	46	74	13	165	31	26	19	22	1.97
46332733--46332792	30	2.0	30	83	0	75	33	25	3	38	1.72
46335182--46335269	29	3.1	29	88	1	142	29	14	26	29	1.95
46338863--46338939	24	3.2	24	85	3	102	18	24	18	38	1.92
46341757--46341801	18	2.5	18	92	0	81	22	20	15	42	1.89
46341748--46341812	18	3.6	18	85	0	76	24	23	15	36	1.93
46345304--46345412	58	1.9	58	83	9	143	27	14	23	33	1.94
46345304--46345425	57	2.1	58	80	7	133	28	13	24	32	1.94
46349248--46349357	55	2.0	55	98	0	211	32	11	25	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46370976--46371084	37	2.9	37	94	0	182	26	30	19	23	1.98
46371385--46371461	24	3.2	24	65	23	63	27	32	12	27	1.93
46371298--46371580	145	2.0	141	90	2	449	26	30	12	30	1.92
46371293--46371580	47	6.0	47	88	3	396	27	30	11	30	1.92
46371293--46371580	98	3.0	93	86	6	396	27	30	11	30	1.92
46373725--46373967	81	3.0	81	99	0	477	28	23	7	40	1.82
46375565--46375622	30	1.9	30	92	0	98	34	12	24	29	1.91
46375958--46376130	46	3.7	47	78	6	172	25	20	29	24	1.99
46392028--46392268	47	5.1	47	86	2	329	31	9	31	26	1.89
46392028--46392213	96	1.9	96	96	0	345	31	9	30	29	1.88
46392029--46392268	96	2.5	95	87	1	311	31	10	32	26	1.89
46392387--46392465	37	2.1	37	88	4	115	25	18	30	25	1.98
46399552--46399907	27	13.2	27	85	1	390	30	21	7	39	1.82
46399552--46399907	54	6.6	54	85	0	435	30	21	7	39	1.82
46399552--46399907	81	4.4	81	86	0	444	30	21	7	39	1.82
46400413--46400485	31	2.4	31	90	0	110	21	19	10	47	1.79
46400413--46400508	31	3.3	28	77	16	90	20	18	12	47	1.81
46400441--46400508	25	2.7	25	90	0	109	19	20	13	47	1.82
46401706--46401762	30	1.9	30	85	0	78	31	12	26	29	1.92
46402864--46402966	37	2.8	37	92	0	170	25	31	20	23	1.98
46403107--46404581	48	30.9	48	95	1	2509	31	30	7	30	1.86
46409310--46409452	65	2.2	65	80	5	155	20	28	27	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46422269--46422295	13	2.1	13	100	0	54	14	37	33	14	1.88
46442039--46442209	49	3.5	48	75	15	156	26	15	30	26	1.96
46448264--46448509	96	2.6	96	91	0	393	36	17	33	11	1.86
46454535--46454728	40	4.9	39	88	3	262	22	28	24	24	1.99
46458168--46458233	33	2.0	33	94	5	116	39	0	18	42	1.50
46475455--46475527	36	2.0	36	86	0	101	32	24	20	21	1.97
46475621--46475739	46	2.6	46	90	5	179	20	19	27	32	1.96
46477942--46478117	46	3.8	46	73	15	146	19	17	29	32	1.95
46482397--46482504	26	4.2	26	91	0	171	37	25	4	32	1.76
46492207--46492281	38	2.0	37	94	0	123	33	21	24	20	1.96
46493141--46493187	23	2.0	23	83	0	58	23	31	8	36	1.85
46499474--46499612	40	3.5	39	89	4	199	26	25	23	23	2.00
46499614--46499907	149	2.0	149	100	0	588	34	22	10	33	1.88
46507118--46507165	9	5.3	9	76	0	51	60	10	2	27	1.41
46507118--46507169	18	2.9	18	75	11	61	59	9	3	26	1.46
46508564--46508602	16	2.5	15	84	8	51	7	0	10	82	0.86
46511832--46512143	40	7.8	40	81	0	372	25	27	21	25	1.99
46511832--46512142	120	2.6	120	95	1	543	26	27	21	25	1.99
46513920--46514101	40	4.6	40	90	0	267	29	26	21	23	1.99
46515460--46515485	13	2.0	13	100	0	52	61	7	0	30	1.24
46520603--46520705	41	2.6	41	86	11	135	25	28	21	25	1.99
46520680--46520801	60	2.0	60	100	0	244	33	24	13	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46528346--46528557	40	5.3	40	87	4	243	25	21	28	25	1.99
46528346--46528557	80	2.7	80	85	3	268	25	21	28	25	1.99
46528346--46528590	80	3.1	80	80	5	205	26	21	28	24	1.99
46531315--46531466	47	3.3	47	86	2	182	28	30	9	31	1.88
46532311--46532351	20	2.0	20	100	0	82	31	14	0	53	1.41
46539645--46539953	161	1.9	161	87	2	451	28	17	15	38	1.91
46551689--46551733	20	2.2	21	80	11	58	24	33	15	26	1.95
46551698--46551742	20	2.2	20	92	0	72	24	26	15	33	1.95
46551881--46551929	23	2.2	22	82	7	55	28	0	6	65	1.16
46560262--46560317	27	2.2	25	87	6	76	8	25	1	64	1.32
46579844--46579883	21	2.0	20	85	14	55	5	15	5	75	1.15
46582871--46582919	20	2.5	20	75	0	53	12	32	2	53	1.50
46585067--46585105	20	2.1	18	85	9	51	28	15	2	53	1.55
46585066--46585105	21	2.0	20	86	13	57	27	15	2	55	1.53
46585144--46585175	16	2.0	17	88	11	50	3	3	6	87	0.73
46585975--46586046	30	2.4	30	85	0	90	30	8	34	26	1.86
46587436--46587461	10	2.6	10	100	0	52	23	7	0	69	1.14
46591213--46591262	18	2.5	20	87	9	68	74	2	20	4	1.08
46601232--46601268	18	2.1	18	94	0	65	27	27	16	29	1.97
46601574--46601612	16	2.4	16	87	8	53	74	5	10	10	1.21
46604585--46604658	37	2.0	37	100	0	148	21	43	8	27	1.80
46606857--46606895	18	2.2	17	82	13	51	5	17	2	74	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46609782--46609834	23	2.3	23	87	9	72	32	13	9	45	1.75
46611132--46611177	13	3.5	13	88	5	65	76	2	6	15	1.09
46614310--46614362	21	2.5	21	77	17	56	75	1	13	9	1.12
46614337--46614435	45	2.2	46	92	1	164	66	3	15	15	1.37
46615334--46615373	12	3.3	12	78	0	53	72	2	15	10	1.21
46615408--46615469	33	1.9	32	86	3	88	59	0	22	17	1.37
46616719--46616806	30	2.9	30	78	13	81	73	4	12	9	1.22
46616750--46616788	15	2.5	16	87	4	53	82	2	12	2	0.89
46617651--46617690	12	3.3	12	78	0	53	72	2	15	10	1.21
46617725--46617786	33	1.9	32	86	3	88	59	0	22	17	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153