genome.fa.s18.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  47  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15643551--15643583	16	2.0	17	88	5	50	36	21	0	42	1.53
15644075--15644104	3	10.0	3	100	0	60	66	0	0	33	0.92
15644520--15644562	5	8.2	5	85	10	59	55	0	0	44	0.99
15660225--15660290	32	2.1	32	97	0	123	36	9	16	37	1.81
15661761--15661801	18	2.3	18	83	4	57	14	41	29	14	1.86
15667703--15667761	30	2.0	30	93	0	100	45	11	8	33	1.71
15667711--15667760	15	3.3	15	69	20	50	46	10	8	36	1.67
15669271--15669331	30	2.0	30	96	0	113	21	21	11	45	1.82
15672835--15672905	3	24.0	3	83	8	92	29	1	2	66	1.15
15673036--15673080	22	2.0	22	83	8	56	35	2	8	53	1.45
15673099--15673159	31	2.0	31	87	6	88	22	4	6	65	1.36
15673493--15673549	24	2.5	22	80	8	69	36	1	8	52	1.43
15679934--15680911	489	2.0	489	100	0	1956	31	23	14	30	1.95
15681911--15682036	26	4.8	26	91	0	207	30	7	25	36	1.84
15684641--15684670	10	2.8	11	90	10	53	83	0	0	16	0.65
15684917--15684954	18	2.2	17	86	9	51	21	7	2	68	1.28
15686787--15686835	20	2.7	18	77	22	57	51	8	2	38	1.43
15691929--15691991	30	2.1	29	97	2	117	44	23	6	25	1.77
15695084--15695143	21	3.0	19	78	9	66	3	28	0	68	1.05
15702171--15702230	22	2.8	23	71	19	58	3	30	1	65	1.19
15704952--15705012	21	2.8	22	73	14	65	36	21	22	19	1.95
15705482--15705515	17	1.9	18	88	5	52	35	23	0	41	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15706005--15706049	3	15.0	3	80	0	54	57	0	2	40	1.11
15713740--15713847	53	2.1	52	98	1	207	50	19	11	19	1.77
15714003--15714059	28	2.0	30	83	13	75	68	5	0	26	1.11
15717012--15717045	15	2.3	15	89	0	50	44	2	20	32	1.67
15729486--15729524	14	2.7	15	80	15	55	53	5	5	35	1.45
15735352--15735402	21	2.4	21	86	0	75	27	7	33	31	1.85
15738665--15738725	31	2.0	31	93	0	104	44	11	9	34	1.74
15744354--15744482	46	2.8	46	89	2	179	40	14	23	21	1.90
15747034--15747073	11	3.6	11	82	0	53	55	7	15	22	1.65
15748740--15748780	20	2.0	20	95	0	73	29	14	19	36	1.92
15753971--15754002	15	2.1	15	94	0	55	56	21	0	21	1.43
15755000--15755135	56	2.4	56	92	0	227	33	24	15	27	1.95
15765267--15765365	42	2.4	42	91	0	162	18	20	15	46	1.84
15765355--15765424	21	3.3	21	79	0	86	14	21	17	47	1.82
15765267--15765408	42	3.4	42	85	1	160	17	22	15	44	1.86
15765351--15765452	42	2.4	42	86	0	132	14	22	18	44	1.86
15767312--15767380	20	3.4	20	74	18	79	40	18	4	36	1.71
15767307--15767388	41	2.0	41	97	0	155	39	18	4	37	1.72
15768612--15768688	21	3.6	22	91	8	133	36	18	27	18	1.94
15770261--15770298	18	2.1	18	90	0	58	44	44	2	7	1.47
15770327--15770365	20	2.0	20	84	0	51	74	7	0	17	1.05
15770383--15770432	9	5.6	9	81	9	66	24	10	20	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15771305--15771394	39	2.2	41	88	3	130	53	4	2	40	1.33
15771497--15771562	29	2.2	29	79	15	73	50	3	0	46	1.16
15787071--15787122	23	2.3	23	87	9	79	61	3	0	34	1.14
15792423--15792470	17	2.8	17	87	0	69	60	4	2	33	1.27
15793582--15793611	3	10.0	3	100	0	60	0	33	0	66	0.92
15793763--15793792	15	2.0	15	93	0	51	76	0	0	23	0.78
15793776--15793884	10	11.7	9	72	13	71	64	0	2	32	1.14
15793775--15793894	28	4.2	29	74	15	115	63	0	2	33	1.14
15793767--15793836	35	1.9	35	85	5	95	64	1	0	34	1.03
15795822--15795849	5	5.6	5	100	0	56	17	0	0	82	0.68
15796489--15796591	51	2.0	51	100	0	206	40	15	17	26	1.89
15797863--15797899	12	3.1	12	100	0	74	59	0	8	32	1.27
15798414--15798447	16	2.1	16	88	0	50	41	2	20	35	1.68
15814444--15814494	20	2.7	19	73	8	59	66	0	11	21	1.23
15828324--15828362	14	2.8	14	88	7	53	38	10	17	33	1.84
15828480--15828509	15	2.0	15	100	0	60	40	6	20	33	1.78
15828661--15828717	26	2.2	26	81	12	64	45	1	1	50	1.22
15828805--15828844	14	2.8	15	81	11	57	50	0	0	50	1.00
15828876--15828932	15	3.5	15	71	17	51	49	1	1	47	1.22
15833533--15833678	40	3.6	40	83	8	188	34	26	15	23	1.94
15840811--15841092	129	2.2	132	79	7	299	35	20	19	24	1.96
15841009--15841410	132	3.1	131	81	5	411	34	17	17	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15844519--15845322	132	6.1	132	91	2	1170	27	26	19	27	1.99
15844846--15845178	44	7.5	45	63	14	129	27	27	18	26	1.98
15856977--15857483	132	3.8	132	86	2	608	32	17	19	30	1.95
15868325--15868359	18	1.9	18	88	0	52	28	2	5	62	1.32
15868314--15868372	17	3.2	18	76	7	57	28	1	6	62	1.30
15870139--15870172	18	1.9	18	88	5	52	32	0	11	55	1.36
15870190--15870214	12	2.1	12	100	0	50	24	0	0	76	0.80
15875168--15875209	21	2.0	22	90	4	68	61	4	4	28	1.36
15875170--15875217	22	2.2	21	85	3	60	64	4	6	25	1.35
15875222--15875247	4	6.5	4	100	0	52	76	0	0	23	0.78
15878855--15879042	65	2.9	65	98	0	358	23	27	25	23	2.00
15880003--15880061	28	2.1	28	93	0	100	30	30	13	25	1.94
15885706--15885730	4	6.2	4	100	0	50	52	24	0	24	1.48
15895784--15895845	13	4.8	13	92	4	99	40	22	12	24	1.89
15895786--15895845	25	2.4	25	91	2	93	40	23	11	25	1.88
15900298--15900346	13	3.8	13	81	5	64	40	18	14	26	1.89
15901770--15901910	3	47.0	3	98	0	264	65	0	1	33	1.02
15902968--15903001	17	2.0	17	100	0	68	5	0	41	52	1.25
15903667--15903818	72	2.1	72	84	7	193	34	17	16	31	1.93
15903720--15904240	127	4.1	127	96	1	933	34	20	16	28	1.94
15903720--15904315	254	2.4	252	90	5	935	34	20	16	28	1.94
15908656--15908700	3	15.0	3	95	0	72	62	0	4	33	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15914200--15914226	11	2.5	11	100	0	54	7	0	0	92	0.38
15914797--15914830	17	2.0	17	100	0	68	5	0	41	52	1.25
15918418--15918457	20	2.0	20	90	0	62	22	10	10	57	1.61
15918631--15918667	12	3.1	12	88	0	56	27	0	24	48	1.51
15919602--15919633	16	2.0	16	100	0	64	56	18	6	18	1.62
15923535--15923612	40	2.0	40	94	0	138	29	29	19	21	1.98
15931660--15931772	40	2.8	40	95	0	199	28	28	19	23	1.98
15948441--15948473	17	2.0	17	94	5	59	36	15	0	48	1.45
15948755--15949028	46	6.0	46	91	0	424	22	23	13	40	1.89
15950665--15950697	17	1.9	17	93	0	57	0	21	0	78	0.75
15956232--15956279	22	2.2	22	100	0	96	60	16	4	18	1.51
15961904--15962097	96	2.0	96	84	0	253	37	14	31	15	1.89
15972631--15972661	15	2.1	15	93	0	53	54	0	0	45	0.99
15978354--15978425	23	3.1	22	75	11	65	61	1	5	31	1.28
15978413--15978478	24	2.6	25	76	19	66	57	0	7	34	1.27
15979963--15980044	43	1.9	43	97	0	155	26	26	15	30	1.96
15980080--15980448	176	2.1	175	89	1	560	25	20	19	34	1.96
15989215--15989317	46	2.2	46	84	3	127	20	23	13	42	1.87
15991191--15991625	46	9.6	45	87	3	586	22	23	13	40	1.89
15991191--15991627	90	4.8	90	86	3	599	22	23	13	40	1.89
15997175--15997252	34	2.3	34	75	14	79	60	1	6	32	1.30
15997976--15998001	13	2.0	13	100	0	52	53	7	15	23	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15999731--15999783	21	2.5	21	87	0	79	33	35	5	24	1.79
16001977--16002146	87	2.0	87	95	0	304	31	22	4	41	1.74
16002830--16003361	278	1.9	278	99	0	1046	46	13	10	29	1.77
16014382--16014420	8	4.9	8	81	12	53	15	2	0	82	0.79
16016079--16016130	27	2.0	27	88	3	79	59	3	1	34	1.27
16025404--16025439	18	2.0	18	88	0	54	33	0	2	63	1.08
16033417--16033458	20	2.1	20	100	0	84	40	14	30	14	1.85
16034318--16034355	19	2.0	19	100	0	76	36	26	10	26	1.89
16049191--16049367	50	3.5	50	91	0	273	35	15	23	25	1.94
16049343--16049460	31	3.8	31	91	0	191	28	18	26	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153